BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0037.p         (181 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A1WS23.1 A1WS23_VEREI Transcriptional regulator, LysR family          292   1e-77
B9TIA2.1 B9TIA2_RICCO HTH-type transcriptional regulator cynR, p...   280   5e-74
D8J197.1 D8J197_HERSS LysR family transcription regulator protein     279   1e-73
D8N0C1.1 D8N0C1_RALSO Putative transcriptional regulator, LysR f...   201   4e-50
B3RCN0.1 B3RCN0_CUPTR Putative transcriptional regulator, LysR f...   200   6e-50

>A1WS23.1 A1WS23_VEREI Transcriptional regulator, LysR family
          Length = 305

 Score =  292 bits (748), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 144/166 (86%), Positives = 154/166 (92%)

Query: 1   MKSQYLQDTALRYFLEVVRCGSIAEASQRLNVASSAISRQIRSLEELLDTVLFERRPRGM 60
           MKS+YLQD ALRYFLEVVR GSIA ASQRLNVASSAISRQI SLE LLDTVLFERRPRGM
Sbjct: 1   MKSEYLQDIALRYFLEVVRSGSIAAASQRLNVASSAISRQISSLEGLLDTVLFERRPRGM 60

Query: 61  VLSAGGEMLAAHAQKVRLEADRVVADLLALKGLRSGRIRVAASEGFGIDFMPRLIRSFQQ 120
           VLS GGEMLAAHAQKV LE+DRVVADLLALKGLR GR+RVAASEG G+DF+PRLIR+FQQ
Sbjct: 61  VLSVGGEMLAAHAQKVMLESDRVVADLLALKGLRRGRVRVAASEGLGVDFVPRLIRAFQQ 120

Query: 121 KYPAIQFQVYVGPPTMVSRQVRDGNADIGVTFNRLPEPDIKIVHQQ 166
           +YPAIQFQVYVGPP +VSR VRDGNADIGVTFNRLPEP IKIV+Q+
Sbjct: 121 QYPAIQFQVYVGPPALVSRHVRDGNADIGVTFNRLPEPFIKIVYQK 166


>B9TIA2.1 B9TIA2_RICCO HTH-type transcriptional regulator cynR, putative
           (Fragment)
          Length = 187

 Score =  280 bits (717), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 135/166 (81%), Positives = 154/166 (92%)

Query: 1   MKSQYLQDTALRYFLEVVRCGSIAEASQRLNVASSAISRQIRSLEELLDTVLFERRPRGM 60
           MKSQ LQDTALRYFLEVVRCGSI+EASQRLNVASSAISRQI SLE++LDTVLFERRPRGM
Sbjct: 1   MKSQQLQDTALRYFLEVVRCGSISEASQRLNVASSAISRQISSLEQILDTVLFERRPRGM 60

Query: 61  VLSAGGEMLAAHAQKVRLEADRVVADLLALKGLRSGRIRVAASEGFGIDFMPRLIRSFQQ 120
           VLSAGGEMLAAHA+K+ LEADRVVADL ALKGLRSGR+R++ASEGF IDF+PRLI +FQ+
Sbjct: 61  VLSAGGEMLAAHARKMALEADRVVADLQALKGLRSGRVRLSASEGFAIDFLPRLINAFQK 120

Query: 121 KYPAIQFQVYVGPPTMVSRQVRDGNADIGVTFNRLPEPDIKIVHQQ 166
           KYP   FQ++VG P +VSRQVR+GNADIG+TF RLPEP+IK+VH+Q
Sbjct: 121 KYPGFVFQLFVGAPALVSRQVREGNADIGLTFARLPEPEIKVVHRQ 166


>D8J197.1 D8J197_HERSS LysR family transcription regulator protein
          Length = 303

 Score =  279 bits (714), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 135/166 (81%), Positives = 154/166 (92%)

Query: 1   MKSQYLQDTALRYFLEVVRCGSIAEASQRLNVASSAISRQIRSLEELLDTVLFERRPRGM 60
           MKSQ LQDTALRYFLEVVRCGSI+EASQRLNVASSAISRQI SLE++LDTVLFERRPRGM
Sbjct: 1   MKSQQLQDTALRYFLEVVRCGSISEASQRLNVASSAISRQISSLEQILDTVLFERRPRGM 60

Query: 61  VLSAGGEMLAAHAQKVRLEADRVVADLLALKGLRSGRIRVAASEGFGIDFMPRLIRSFQQ 120
           VLSAGGEMLAAHA+K+ LEADRVVADL ALKGLRSGR+R++ASEGF IDF+PRLI +FQ+
Sbjct: 61  VLSAGGEMLAAHARKMALEADRVVADLQALKGLRSGRVRLSASEGFAIDFLPRLINAFQK 120

Query: 121 KYPAIQFQVYVGPPTMVSRQVRDGNADIGVTFNRLPEPDIKIVHQQ 166
           KYP   FQ++VG P +VSRQVR+GNADIG+TF RLPEP+IK+VH+Q
Sbjct: 121 KYPGFVFQLFVGAPALVSRQVREGNADIGLTFARLPEPEIKVVHRQ 166


>D8N0C1.1 D8N0C1_RALSO Putative transcriptional regulator, LysR family
          Length = 312

 Score =  201 bits (511), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 100/167 (59%), Positives = 128/167 (76%), Gaps = 2/167 (1%)

Query: 2   KSQYLQDTALRYFLEVVRCGSIAEASQRLNVASSAISRQIRSLEELLDTVLFERRPRGMV 61
           +S  LQ TALRYFLEVVRCGSI+EA+ RLNVA SA+SRQI  LEE L+ VLFER PRGM 
Sbjct: 3   QSHRLQSTALRYFLEVVRCGSISEAALRLNVAGSAVSRQIAGLEEALNVVLFERHPRGMT 62

Query: 62  LSAGGEMLAAHAQKVRLEADRVVADLLALKGLRSGRIRVAASEGFGIDFMPRLIRSFQQK 121
           LSA GE+LAAHA++   EA+RVVAD+LAL+GL +G++R+ ASEGF I F+P  I +F+ K
Sbjct: 63  LSAAGELLAAHARRSSSEAERVVADVLALQGLGTGQVRLGASEGFAIQFLPSTIDAFRAK 122

Query: 122 YPAIQFQVYVGPPTMVSRQVRDGNADIGVTFN--RLPEPDIKIVHQQ 166
           YP I+F + V  P  ++R+VR G  DIG+ FN  R+ + DIK+ H+Q
Sbjct: 123 YPGIRFHLVVDAPAEITRRVRQGECDIGLVFNYSRVGQKDIKVEHRQ 169


>B3RCN0.1 B3RCN0_CUPTR Putative transcriptional regulator, LysR family
          Length = 305

 Score =  200 bits (509), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 99/166 (59%), Positives = 127/166 (76%)

Query: 1   MKSQYLQDTALRYFLEVVRCGSIAEASQRLNVASSAISRQIRSLEELLDTVLFERRPRGM 60
           M S  LQDT+LRYFLEVVR GS+ EA+QRLNV  SA+SRQ+ +LE LL   LF+RRPRGM
Sbjct: 1   MLSHRLQDTSLRYFLEVVRSGSLTEAAQRLNVTVSAVSRQVAALEALLGVPLFDRRPRGM 60

Query: 61  VLSAGGEMLAAHAQKVRLEADRVVADLLALKGLRSGRIRVAASEGFGIDFMPRLIRSFQQ 120
           V SA GE+LAA A +  LEADRVV+++ AL+GLR GR+RVA+S GF I+F+PR I  F+Q
Sbjct: 61  VASAAGELLAAFALRGALEADRVVSEIAALQGLRRGRVRVASSAGFAIEFLPRSIAEFRQ 120

Query: 121 KYPAIQFQVYVGPPTMVSRQVRDGNADIGVTFNRLPEPDIKIVHQQ 166
           +YP +QF + V PP  V+  V  G+ADIG+T++R PE  I+I H+Q
Sbjct: 121 RYPGLQFHLRVAPPAEVTGIVLHGDADIGITYSRAPEQGIRIAHRQ 166