BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0025.p (243 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IQB3.1 D8IQB3_HERSS Periplasmic amino acid-binding protein 336 2e-90 C9Y9Z9.1 C9Y9Z9_9BURK Putative uncharacterized protein 192 3e-47 B9QSV1.1 B9QSV1_9RHOB Putative uncharacterized protein 142 6e-32 E1VFS8.1 E1VFS8_9GAMM Predicted extracellular solute-binding pro... 140 1e-31 Q2SJJ0.1 Q2SJJ0_HAHCH ABC-type amino acid transport/signal trans... 138 6e-31 >D8IQB3.1 D8IQB3_HERSS Periplasmic amino acid-binding protein Length = 265 Score = 336 bits (862), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 146/233 (62%), Positives = 192/233 (82%) Query: 1 LAALSQEKECRKVVISADSDYAPLQWYDGKHLTGASIEIATSALTTLGIPYEVRYVGPFH 60 +A + EC ++V+SADSDYAPL WYDGKHLTGASIEIAT AL L IP+EVRYVGPFH Sbjct: 16 IAPAAGAAECTRLVVSADSDYAPLHWYDGKHLTGASIEIATRALEALNIPFEVRYVGPFH 75 Query: 61 RVLKSAQTGEIDMISSLKDTPERREYLIYTNVALFANPIAIFVARERSFSYSGWNDLMGK 120 RVLK+A++GE+ MI+SLK TPER++YL +T+V LF NPIA+FVAR+R F+Y GW DL+GK Sbjct: 76 RVLKAAESGEVAMIASLKITPERQQYLAFTSVPLFVNPIAVFVARDRRFAYGGWKDLVGK 135 Query: 121 KGGVTLGNQFGNGFDEFLKGNLQVEAEQKAYMNFKKLELHRIDYLITGYYSGIAYLTASG 180 +G +TLGNQFG GFDEF++ NL +E QK YMNF KL+ RIDYL+TGYYSG+ YL + Sbjct: 136 RGAITLGNQFGGGFDEFMRDNLIIETAQKTYMNFTKLDSGRIDYLLTGYYSGMIYLNQTQ 195 Query: 181 QNDKFVALKPYVSESDNFIAIAKSSPCIRHLKALNLQLDTMRREGKLKLILDK 233 Q D+F+ L+P+VSE+DN++A++K+SPCI+HL +N QL+TM++ G+L+ +L K Sbjct: 196 QQDRFMPLRPFVSETDNYLALSKASPCIKHLARINAQLETMQKRGELRAVLQK 248 >C9Y9Z9.1 C9Y9Z9_9BURK Putative uncharacterized protein Length = 286 Score = 192 bits (489), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 88/225 (39%), Positives = 138/225 (61%) Query: 7 EKECRKVVISADSDYAPLQWYDGKHLTGASIEIATSALTTLGIPYEVRYVGPFHRVLKSA 66 + +C ++V+++D Y PL WYDG+ L GASIEIA L L I +E+R VGPF RV+ A Sbjct: 46 QSQCTRMVVTSDPAYPPLHWYDGETLQGASIEIAKRVLGDLKIDFEIRSVGPFPRVMALA 105 Query: 67 QTGEIDMISSLKDTPERREYLIYTNVALFANPIAIFVARERSFSYSGWNDLMGKKGGVTL 126 + GE+DM+ +LK TPER +L+Y NP+A F +++ Y DL+G +G + Sbjct: 106 ERGEVDMVVTLKKTPERETFLLYPKTIALQNPVAAFTSKDLPLVYRDKADLIGMRGAMAR 165 Query: 127 GNQFGNGFDEFLKGNLQVEAEQKAYMNFKKLELHRIDYLITGYYSGIAYLTASGQNDKFV 186 GN FGNG DE++K L V+ + +F + L R DY ITGYY+G+A + G FV Sbjct: 166 GNVFGNGLDEYIKEKLNVQEVNRPDASFSLMLLGRADYFITGYYTGMALILKRGDEANFV 225 Query: 187 ALKPYVSESDNFIAIAKSSPCIRHLKALNLQLDTMRREGKLKLIL 231 A +P++ ++ N++A+ ++ C L+ ++ +L +++ G L IL Sbjct: 226 AKEPFLVDTPNYLALTRNGKCADKLEQIDARLAILKKTGVLDEIL 270 >B9QSV1.1 B9QSV1_9RHOB Putative uncharacterized protein Length = 270 Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 72/212 (33%), Positives = 109/212 (51%), Gaps = 1/212 (0%) Query: 2 AALSQEKECRKVVISADSDYAPLQWYDGKHLTGASIEIATSALTTLGIPYEVRYVGPFHR 61 AL+ + C +V SA DY P W +G + GAS+++ +G+ ++ + GP+ R Sbjct: 17 GALASDPNCTRVTASAHPDYPPYHWREGGRIVGASVDLNKMIFQEIGVSFDAVFTGPWKR 76 Query: 62 VLKSAQTGEIDMISSLKDTPERREYLIYTNVALFANPIAIFVARERSFSYSGWNDLMGKK 121 VLK+A+ G+ID + SLK T ER +L +T+ F NP +F R F GWNDL G+ Sbjct: 77 VLKTAENGDIDFLMSLKKTDERSAFLDFTDTPAFENPFTVFTLENRRFPLGGWNDLKGRY 136 Query: 122 GGVTLGNQFGNGFDEFLKGNLQVEAEQKAYMNFKKLELHRIDYLITGYYSGIAYLTASGQ 181 G G+++G FD ++ L++ N +L + RIDY+I G Y G A A Sbjct: 137 GAKNAGDRYGEPFDAYVANVLKLSDNFSFQDNVNQLLVGRIDYIIHGRYVGQAQFGAIQG 196 Query: 182 NDKFVALKPYVSESDNFIAIAKSSPCIRHLKA 213 + V + V + +SPC RHLK Sbjct: 197 GEDIVPVDWNVMNGFVHSGFSLNSPC-RHLKG 227 >E1VFS8.1 E1VFS8_9GAMM Predicted extracellular solute-binding protein Length = 292 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 74/202 (36%), Positives = 109/202 (53%), Gaps = 2/202 (0%) Query: 10 CRK--VVISADSDYAPLQWYDGKHLTGASIEIATSALTTLGIPYEVRYVGPFHRVLKSAQ 67 CR VVIS Y PL W G HL GAS+++ T L GI + GP+ RVL A+ Sbjct: 54 CRAGGVVISGGDTYPPLSWRRGDHLVGASVDMVTEILAGFGIHAKADEGGPWKRVLLRAR 113 Query: 68 TGEIDMISSLKDTPERREYLIYTNVALFANPIAIFVARERSFSYSGWNDLMGKKGGVTLG 127 GE+D++ ++ E +L+Y + + +F+ + FSY W+DL GK G +TLG Sbjct: 114 DGEVDILLGVRKAREYEHFLVYLEPPITPSVQGVFMLKGHEFSYKDWSDLEGKSGSITLG 173 Query: 128 NQFGNGFDEFLKGNLQVEAEQKAYMNFKKLELHRIDYLITGYYSGIAYLTASGQNDKFVA 187 F FD F K +L+++ ++ NF KLE R+DY++ YL G DK VA Sbjct: 174 TTFDKKFDAFAKSHLELQPVRRIEQNFFKLEKRRVDYMLAPSQPTQLYLKRFGYQDKIVA 233 Query: 188 LKPYVSESDNFIAIAKSSPCIR 209 + + + +IAI+K SPCI+ Sbjct: 234 AQEPLMILEEYIAISKKSPCIQ 255 >Q2SJJ0.1 Q2SJJ0_HAHCH ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Length = 285 Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 83/248 (33%), Positives = 127/248 (51%), Gaps = 9/248 (3%) Query: 1 LAALSQE----KECRKVVISADSDYAPLQWYDGKH---LTGASIEIATSALTTLGIPYEV 53 L AL QE K C + +++D +Y P+ W D ++ + G +IEI A+ G+ E Sbjct: 9 LTALLQEPVWAKNCVSLTVTSDPNYPPISWQDKQNPHRIIGVAIEIVELAMADKGVKVES 68 Query: 54 RYVGPFHRVLKSAQTGEIDMISSLKDTPERREYLIYTNVALFANPIAIFVARERSFSYSG 113 +Y GP+ RVL A T +DMIS L + ERR L + ++P IFV F + Sbjct: 69 KYKGPWKRVL--ASTDSVDMISGLYISEERRALLHFVQPPFMSDPNVIFVKEGHGFPFKS 126 Query: 114 WNDLMGKKGGVTLGNQFGNGFDEFLKGNLQVEAEQKAYMNFKKLELHRIDYLITGYYSGI 173 W DL GKKGG LG+ FG FDEF K +L +E + + R+DY + G Y GI Sbjct: 127 WEDLKGKKGGARLGDSFGVEFDEFAKQHLNLERVGQFEQLYGMTMAGRLDYFLYGLYPGI 186 Query: 174 AYLTASGQNDKFVALKPYVSESDNFIAIAKSSPCIRHLKALNLQLDTMRREGKLKLILDK 233 + N + L ++E +IA +K+S CI + L+ ++ +EG L ++ K Sbjct: 187 SLAEELNLNRQLEFLPTPITEEGIYIAFSKTSNCIGYADYLSEKIKQYSKEGLLGELIQK 246 Query: 234 HIALLPKR 241 ++A K+ Sbjct: 247 YMATWEKQ 254