BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0124.p (414 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IWS2.1 D8IWS2_HERSS AraC family xylose operon transcription re... 711 0.0 E2XQC3.1 E2XQC3_PSEFL Xylose operon regluatory protein 579 e-163 F2KH39.1 F2KH39_PSEBR Putative Xylose operon regulatory protein 579 e-163 Q3KDV9.1 Q3KDV9_PSEPF Xylose operon regulatory protein 574 e-162 Q4ZSF6.1 Q4ZSF6_PSEU2 Helix-turn-helix, AraC type:Periplasmic bi... 573 e-161 >D8IWS2.1 D8IWS2_HERSS AraC family xylose operon transcription regulator protein Length = 442 Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/395 (85%), Positives = 362/395 (91%), Gaps = 2/395 (0%) Query: 1 VTKVPTVHRIALLFNGNKIFDRDIIAGIGEYLSSTRASWDLYLEEDFRCRPQGIERWQGH 60 V K PTVHRIALLFNGNKIFDR+IIAGIGEY+SSTRASWDLYLEEDFRCRPQGIERW GH Sbjct: 25 VAKAPTVHRIALLFNGNKIFDREIIAGIGEYISSTRASWDLYLEEDFRCRPQGIERWAGH 84 Query: 61 GIIADFDDPTMQEALSRVQLPVVAVGGSYADESGYPKDLPYVATDNFKLVKLAYDHLIEA 120 GIIADFDDP AL VQLPVVA+GGSYAD S YP + PYVATDN+K+VKLAYDHLIEA Sbjct: 85 GIIADFDDPVTTAALEGVQLPVVAIGGSYADPSQYPANRPYVATDNYKMVKLAYDHLIEA 144 Query: 121 GLQNFACFSLPQADVNRWAQEREKAFESLTQRDGIQGHVYRGVGTSAQSWDTAVEQQIAW 180 GLQ+FA FSLP++D NRWAQERE+ F LT DGI GH+YRGVGTSAQSWDTAVEQQIAW Sbjct: 145 GLQHFALFSLPESDCNRWAQERERIFTDLTGADGIAGHIYRGVGTSAQSWDTAVEQQIAW 204 Query: 181 VRSLPKPIGIIAVTDARARQLLQACLFAGIAVPEQVALIGIDNDPLARILTRVPLSSVIQ 240 VRSLPKP+GIIAVTDARARQLLQACLFAGIAVPEQVALIGIDNDPLAR+LTR+PLSSVIQ Sbjct: 205 VRSLPKPVGIIAVTDARARQLLQACLFAGIAVPEQVALIGIDNDPLARVLTRIPLSSVIQ 264 Query: 241 GTLEMGRTAAHLLHQMLHGHGAQFSDKRILVPPAGINVLASSRHEARNHPHVMQAMHFIR 300 G++EMGRTAAHLLHQML HGA+F D RI+VPP GINVLASSRHE RNHPHVMQA+HFIR Sbjct: 265 GSVEMGRTAAHLLHQML--HGARFPDTRIMVPPVGINVLASSRHEVRNHPHVMQALHFIR 322 Query: 301 QYACQGIKTEQVADYVGVSRSSLDWYFRRELGRSVHDEILRFKLDAARRMLQQAHGNVAE 360 QYACQGIKT+QVADYVG+SRSSL+WYFRRELGRSVHDEILRFKLDAA+R+L+QA + AE Sbjct: 323 QYACQGIKTDQVADYVGISRSSLEWYFRRELGRSVHDEILRFKLDAAKRLLEQAGSHAAE 382 Query: 361 IAVSCGFTSVQYMHAVFKRELGCTPREYQEQLMQG 395 IAVSCGFTSVQYMHAVFKRELGCTPREYQEQ G Sbjct: 383 IAVSCGFTSVQYMHAVFKRELGCTPREYQEQFAAG 417 >E2XQC3.1 E2XQC3_PSEFL Xylose operon regluatory protein Length = 393 Score = 579 bits (1492), Expect = e-163, Method: Compositional matrix adjust. Identities = 289/399 (72%), Positives = 323/399 (80%), Gaps = 6/399 (1%) Query: 1 VTKVPTVHRIALLFNGNKIFDRDIIAGIGEYLSSTRASWDLYLEEDFRCRPQGIERWQGH 60 + +P VHRIALLFNG+KI+DR IIAGIG YLSSTRASWDL+LEEDF CR +GIERWQG Sbjct: 1 MKTLPPVHRIALLFNGSKIYDRGIIAGIGNYLSSTRASWDLFLEEDFLCRLRGIERWQGD 60 Query: 61 GIIADFDDPTMQEALSRVQLPVVAVGGSYADESGYPKDLPYVATDNFKLVKLAYDHLIEA 120 GIIADFDDP + EAL+ QLPVVAVGGSY D YP+ +PYVATDN+ L+KLAY+HLIEA Sbjct: 61 GIIADFDDPLIGEALAGSQLPVVAVGGSYEDARAYPQGIPYVATDNYGLMKLAYEHLIEA 120 Query: 121 GLQNFACFSLPQADVNRWAQEREKAFESLTQRDGIQGHVYRGVGTSAQSWDTAVEQQIAW 180 GL FACFSLP+A NRWAQEREKAF L QRDG+Q +YRG+GTSA WD+AVEQQIAW Sbjct: 121 GLTRFACFSLPEAQANRWAQEREKAFRHLMQRDGLQVQIYRGLGTSAPMWDSAVEQQIAW 180 Query: 181 VRSLPKPIGIIAVTDARARQLLQACLFAGIAVPEQVALIGIDNDPLARILTRVPLSSVIQ 240 + SLPKPIGIIAVTDARARQLLQACL AGIAVPEQVALIGIDNDPL R LTRVPLSSVIQ Sbjct: 181 LESLPKPIGIIAVTDARARQLLQACLTAGIAVPEQVALIGIDNDPLTRTLTRVPLSSVIQ 240 Query: 241 GTLEMGRTAAHLLHQMLHGHGAQFSDKRILVPPAGINVLASSRHEARNHPHVMQAMHFIR 300 GT MGRTAA LLHQMLHG + +ILVPP INV ASS H+ +P+VMQA+ FIR Sbjct: 241 GTETMGRTAAALLHQMLHGKPC--TGAQILVPPEAINVQASSLHQPLGNPYVMQALLFIR 298 Query: 301 QYACQGIKTEQVADYVGVSRSSLDWYFRRELGRSVHDEILRFKLDAARRMLQQAHGNVAE 360 QYACQGIKT+QVA YVGVSRSSL+ +FR+ G SVHDEILRFKL AA LQ +A+ Sbjct: 299 QYACQGIKTDQVAAYVGVSRSSLESHFRKVRGCSVHDEILRFKLAAAANGLQHGDLAIAD 358 Query: 361 IAVSCGFTSVQYMHAVFKRELGCTPREYQEQLMQGAAAN 399 IA CGF S QY+H VF+RE GCTPREYQ QGAA + Sbjct: 359 IAQQCGFKSAQYLHTVFRREFGCTPREYQ----QGAACH 393 >F2KH39.1 F2KH39_PSEBR Putative Xylose operon regulatory protein Length = 395 Score = 579 bits (1492), Expect = e-163, Method: Compositional matrix adjust. Identities = 282/390 (72%), Positives = 321/390 (82%), Gaps = 2/390 (0%) Query: 1 VTKVPTVHRIALLFNGNKIFDRDIIAGIGEYLSSTRASWDLYLEEDFRCRPQGIERWQGH 60 + VP VHRIALLFNG+KI+DR II+GIG YLSSTRASWDL+LEEDF CR +GIERWQG Sbjct: 1 MKTVPPVHRIALLFNGSKIYDRGIISGIGNYLSSTRASWDLFLEEDFLCRLKGIERWQGD 60 Query: 61 GIIADFDDPTMQEALSRVQLPVVAVGGSYADESGYPKDLPYVATDNFKLVKLAYDHLIEA 120 GIIADFDDP + EAL+ ++LPVVAVGGSY DE YPK +PYVATDN L+ LAY+HLIEA Sbjct: 61 GIIADFDDPLIGEALAGIKLPVVAVGGSYQDERAYPKGIPYVATDNDALMTLAYEHLIEA 120 Query: 121 GLQNFACFSLPQADVNRWAQEREKAFESLTQRDGIQGHVYRGVGTSAQSWDTAVEQQIAW 180 GL FACFSLP+A NRWAQEREKAF L QRDG+ VYRG+GTSA WD+AVEQQIAW Sbjct: 121 GLTRFACFSLPEAQANRWAQEREKAFRRLVQRDGLHAEVYRGMGTSAPLWDSAVEQQIAW 180 Query: 181 VRSLPKPIGIIAVTDARARQLLQACLFAGIAVPEQVALIGIDNDPLARILTRVPLSSVIQ 240 ++SLPKPIGIIAV+DARARQLLQACL AGIAVPEQVALIGIDNDPL R LTRVPLSSVIQ Sbjct: 181 LQSLPKPIGIIAVSDARARQLLQACLTAGIAVPEQVALIGIDNDPLTRSLTRVPLSSVIQ 240 Query: 241 GTLEMGRTAAHLLHQMLHGHGAQFSDKRILVPPAGINVLASSRHEARNHPHVMQAMHFIR 300 GT MGRTAA LLHQMLHG + + +IL+PP INV SS H+ +P+VMQA+ FIR Sbjct: 241 GTETMGRTAARLLHQMLHGMPS--TGTQILIPPDAINVQVSSLHQPLGNPYVMQALLFIR 298 Query: 301 QYACQGIKTEQVADYVGVSRSSLDWYFRRELGRSVHDEILRFKLDAARRMLQQAHGNVAE 360 QYACQGIKT QVA YVGVSRSSL+ +FR+E G SVHDEILRFKL AA L+ + +A+ Sbjct: 299 QYACQGIKTAQVAAYVGVSRSSLESHFRKERGCSVHDEILRFKLAAAANGLENTNSPIAD 358 Query: 361 IAVSCGFTSVQYMHAVFKRELGCTPREYQE 390 IA +CGF S QY+H VF+RE GCTPREYQ+ Sbjct: 359 IAQNCGFKSAQYLHTVFRREFGCTPREYQQ 388 >Q3KDV9.1 Q3KDV9_PSEPF Xylose operon regulatory protein Length = 391 Score = 574 bits (1480), Expect = e-162, Method: Compositional matrix adjust. Identities = 283/393 (72%), Positives = 319/393 (81%), Gaps = 8/393 (2%) Query: 1 VTKVPTVHRIALLFNGNKIFDRDIIAGIGEYLSSTRASWDLYLEEDFRCRPQGIERWQGH 60 + VP VHRIALLFNG+KI+DR II+GIG YLSSTRASWDL+LEEDF CR +GIERWQG Sbjct: 1 MKTVPPVHRIALLFNGSKIYDRGIISGIGNYLSSTRASWDLFLEEDFLCRLKGIERWQGD 60 Query: 61 GIIADFDDPTMQEALSRVQLPVVAVGGSYADESGYPKDLPYVATDNFKLVKLAYDHLIEA 120 GIIADFDDP + EAL+ ++LPVVAVGGSY DE YPK +PYVATDN L+ +AY+HLIEA Sbjct: 61 GIIADFDDPLIGEALADIKLPVVAVGGSYQDERAYPKGIPYVATDNNALITMAYEHLIEA 120 Query: 121 GLQNFACFSLPQADVNRWAQEREKAFESLTQRDGIQGHVYRGVGTSAQSWDTAVEQQIAW 180 GLQ FACFSLP+A NRWAQEREKAF L QRDG G VYRG+GTSA WD+AVEQ IAW Sbjct: 121 GLQRFACFSLPEAQANRWAQEREKAFLRLMQRDGSHGEVYRGMGTSAPLWDSAVEQLIAW 180 Query: 181 VRSLPKPIGIIAVTDARARQLLQACLFAGIAVPEQVALIGIDNDPLARILTRVPLSSVIQ 240 ++SLPKPIGIIAV+DARARQLLQACL AGIAVPEQVALIGIDNDPL R LTRVPLSSVIQ Sbjct: 181 LQSLPKPIGIIAVSDARARQLLQACLTAGIAVPEQVALIGIDNDPLTRSLTRVPLSSVIQ 240 Query: 241 GTLEMGRTAAHLLHQMLHGH---GAQFSDKRILVPPAGINVLASSRHEARNHPHVMQAMH 297 GT MGRTAA LLHQMLHG GA F L+PP INV SS H+ +P+VMQA+ Sbjct: 241 GTETMGRTAAQLLHQMLHGKPSTGAHF-----LIPPEAINVQVSSLHQPLGNPYVMQALL 295 Query: 298 FIRQYACQGIKTEQVADYVGVSRSSLDWYFRRELGRSVHDEILRFKLDAARRMLQQAHGN 357 FIRQYACQGIKT QVA YVGVSRSSL+ +FR G SVHDEILRFKL AA R L++ Sbjct: 296 FIRQYACQGIKTAQVAAYVGVSRSSLESHFRAVRGCSVHDEILRFKLAAATRGLEKTDTA 355 Query: 358 VAEIAVSCGFTSVQYMHAVFKRELGCTPREYQE 390 +A++A +CGF S QY+H VF+RE GCTPREYQ+ Sbjct: 356 IADVARTCGFKSAQYLHTVFRREFGCTPREYQQ 388 >Q4ZSF6.1 Q4ZSF6_PSEU2 Helix-turn-helix, AraC type:Periplasmic binding protein/LacI transcriptional regulator Length = 399 Score = 573 bits (1476), Expect = e-161, Method: Compositional matrix adjust. Identities = 281/390 (72%), Positives = 316/390 (81%), Gaps = 2/390 (0%) Query: 1 VTKVPTVHRIALLFNGNKIFDRDIIAGIGEYLSSTRASWDLYLEEDFRCRPQGIERWQGH 60 + VP VHRIALLFNG+KI+DR II+GIG YLSSTR SWDL+LEEDF CR +GIERWQG Sbjct: 1 MKTVPPVHRIALLFNGSKIYDRGIISGIGNYLSSTRVSWDLFLEEDFLCRLKGIERWQGD 60 Query: 61 GIIADFDDPTMQEALSRVQLPVVAVGGSYADESGYPKDLPYVATDNFKLVKLAYDHLIEA 120 GIIADFDDP + EAL+ ++LPVVAVGGSY DE YPK +PYVATDN L+K AY+HLIEA Sbjct: 61 GIIADFDDPLIGEALAGIKLPVVAVGGSYQDERAYPKGIPYVATDNHALIKAAYEHLIEA 120 Query: 121 GLQNFACFSLPQADVNRWAQEREKAFESLTQRDGIQGHVYRGVGTSAQSWDTAVEQQIAW 180 GL FACFSLP+A NRWAQERE+AF L QRDG+ +YRG+GTSA WD+AVEQQIAW Sbjct: 121 GLTRFACFSLPEAQANRWAQEREQAFRRLLQRDGLHAEIYRGLGTSAPLWDSAVEQQIAW 180 Query: 181 VRSLPKPIGIIAVTDARARQLLQACLFAGIAVPEQVALIGIDNDPLARILTRVPLSSVIQ 240 ++SLPKPIGIIAVTDARARQLLQACL AGIAVPEQVALIGIDNDPL R LTRVPLSSV+Q Sbjct: 181 LQSLPKPIGIIAVTDARARQLLQACLTAGIAVPEQVALIGIDNDPLTRTLTRVPLSSVVQ 240 Query: 241 GTLEMGRTAAHLLHQMLHGHGAQFSDKRILVPPAGINVLASSRHEARNHPHVMQAMHFIR 300 GT MGRTAA LLHQMLHG + S IL+PP +NV ASS H+ P+VMQA+ FIR Sbjct: 241 GTDTMGRTAARLLHQMLHGMPS--SGTHILIPPDTVNVQASSLHQPLGDPYVMQALLFIR 298 Query: 301 QYACQGIKTEQVADYVGVSRSSLDWYFRRELGRSVHDEILRFKLDAARRMLQQAHGNVAE 360 QYACQGIKT QVA YVGVSRSSL+ +FRR G SVHDEILRFKL AA L+ +AE Sbjct: 299 QYACQGIKTAQVAAYVGVSRSSLESHFRRVRGCSVHDEILRFKLAAAANGLENTGLAIAE 358 Query: 361 IAVSCGFTSVQYMHAVFKRELGCTPREYQE 390 IA CGF S QY+H VF+RE GCTPREYQ+ Sbjct: 359 IARDCGFRSAQYLHTVFRREFGCTPREYQQ 388