BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0121.p         (101 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q2S9U3.1 Q2S9U3_HAHCH Tfp pilus assembly protein FimT                  65   4e-09

>Q2S9U3.1 Q2S9U3_HAHCH Tfp pilus assembly protein FimT
          Length = 161

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 43/70 (61%)

Query: 14 GFTLPELLIVLAIVGMLLAAGMPSLRTYTQNQQLANAANAFLGALNLARSEAIRRGPAPA 73
          GFTL EL++VL I+ + LA G+P +     + +L ++ N  +GALN ARSEA++RG    
Sbjct: 5  GFTLVELMVVLTIIAIALAFGLPGMGYVIDSNRLTSSTNELVGALNFARSEAVKRGRTTR 64

Query: 74 TAADGRAAGW 83
           AA     GW
Sbjct: 65 IAASSGGTGW 74