BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0093.p         (85 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

F1VWG6.1 F1VWG6_9BURK Putative transcription regulator, contains...   154   6e-36
B3R563.1 B3R563_CUPTR Putative uncharacterized protein                102   3e-20
Q472C4.1 Q472C4_CUPPJ Putative uncharacterized protein                101   5e-20
Q1LM76.1 Q1LM76_RALME Putative transcription regulator (MarR fam...   100   8e-20
Q0KBH9.1 Q0KBH9_CUPNH Predicted transcription regulator, contain...    99   2e-19

>F1VWG6.1 F1VWG6_9BURK Putative transcription regulator, contains HTH domain
           (MarR family)
          Length = 190

 Score =  154 bits (388), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 74/85 (87%), Positives = 81/85 (95%)

Query: 1   VVNYSLKKLHSLGLVNTEKRGKEVLYSTNEAGQDVCKRYYDIREQLLVSGLTGDETESFE 60
           VVNYSLKKL +LGLV TEKRGKEVLYSTNEAGQDVC+RY++IREQ+LVSGL+GD TESFE
Sbjct: 106 VVNYSLKKLQALGLVQTEKRGKEVLYSTNEAGQDVCRRYFEIREQVLVSGLSGDGTESFE 165

Query: 61  LEELARFLRILSGLYEQAARSATSM 85
           L ELARFLRILSGLYEQAARSATS+
Sbjct: 166 LSELARFLRILSGLYEQAARSATSL 190


>B3R563.1 B3R563_CUPTR Putative uncharacterized protein
          Length = 196

 Score =  102 bits (253), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 50/85 (58%), Positives = 62/85 (72%)

Query: 1   VVNYSLKKLHSLGLVNTEKRGKEVLYSTNEAGQDVCKRYYDIREQLLVSGLTGDETESFE 60
           +V Y+LKKL  LGLV+ E+ GKE  YST EAG + C RY +IREQ L S  T    E+ E
Sbjct: 112 LVTYALKKLQGLGLVSGERVGKEATYSTTEAGAEACSRYREIREQCLTSNFTAGSEENAE 171

Query: 61  LEELARFLRILSGLYEQAARSATSM 85
           + ELAR +R+L+GLYEQAARSATS+
Sbjct: 172 IGELARLMRVLTGLYEQAARSATSL 196


>Q472C4.1 Q472C4_CUPPJ Putative uncharacterized protein
          Length = 201

 Score =  101 bits (251), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 51/85 (60%), Positives = 60/85 (70%)

Query: 1   VVNYSLKKLHSLGLVNTEKRGKEVLYSTNEAGQDVCKRYYDIREQLLVSGLTGDETESFE 60
           +V YSLKKL  LGLV  E+ GKE  YST  AG + C RY +IREQ L S  T    E+ E
Sbjct: 117 LVTYSLKKLQGLGLVTGERIGKEATYSTTPAGAEACARYREIREQCLTSNFTEGSQENAE 176

Query: 61  LEELARFLRILSGLYEQAARSATSM 85
           + ELAR LR+L+GLYEQAARSATS+
Sbjct: 177 IGELARLLRVLTGLYEQAARSATSL 201


>Q1LM76.1 Q1LM76_RALME Putative transcription regulator (MarR family)
          Length = 195

 Score =  100 bits (248), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 50/85 (58%), Positives = 61/85 (71%)

Query: 1   VVNYSLKKLHSLGLVNTEKRGKEVLYSTNEAGQDVCKRYYDIREQLLVSGLTGDETESFE 60
           +V Y+LKKL  LGLV  E+ GKE  Y+T +AG D C RY +IREQ L S  T    E+ E
Sbjct: 111 LVTYALKKLVGLGLVAGERVGKEATYATTQAGADACARYREIREQCLTSNFTEGSEENLE 170

Query: 61  LEELARFLRILSGLYEQAARSATSM 85
           + ELAR LR+L+GLYEQAARSATS+
Sbjct: 171 IGELARLLRVLTGLYEQAARSATSL 195


>Q0KBH9.1 Q0KBH9_CUPNH Predicted transcription regulator, contains HTH domain
           (MarR family)
          Length = 201

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 49/85 (57%), Positives = 61/85 (71%)

Query: 1   VVNYSLKKLHSLGLVNTEKRGKEVLYSTNEAGQDVCKRYYDIREQLLVSGLTGDETESFE 60
           +V Y+LKKL  LGLV+ E+ GKE  YST  AG + C RY +IREQ L S  T    E+ E
Sbjct: 117 LVTYALKKLQGLGLVSGERVGKEATYSTTPAGAEACARYREIREQCLTSNFTEGSEENAE 176

Query: 61  LEELARFLRILSGLYEQAARSATSM 85
           + ELAR +R+L+GLYEQAARSATS+
Sbjct: 177 IGELARLMRVLTGLYEQAARSATSL 201