BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0089.p (461 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C6BEQ5.1 C6BEQ5_RALP1 AsmA family protein 233 5e-59 E2SYQ8.1 E2SYQ8_9RALS AsmA family protein 232 1e-58 Q8Y1B7.1 Q8Y1B7_RALSO Putative involved in outer membrane biogen... 228 2e-57 C5CYR3.1 C5CYR3_VARPS AsmA family protein 228 2e-57 A3RYB0.1 A3RYB0_RALSO Probable transmembrane 226 4e-57 >C6BEQ5.1 C6BEQ5_RALP1 AsmA family protein Length = 765 Score = 233 bits (594), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 134/368 (36%), Positives = 202/368 (54%), Gaps = 44/368 (11%) Query: 6 RIALWALAALLLLIAALLIAVATVDWNVARPWVSRKVVELTGRTFAIGGNLKVGYTLGLP 65 ++AL + ++++AA +I V T DWN A+P+++ ++ + GR FAI G+L + T P Sbjct: 6 KLALGLVITPVVIVAAAVIFVLTFDWNRAKPYLNDRISQAIGRPFAINGDLIL--TWKKP 63 Query: 66 T-EPGWQRYVPRLRITGDNVRFANPAWASTGPDLLTARRVSVALHPLPLLKHRVVLSELI 124 E GW+ YVP R+ +++ NP WA P++ T +++ L LPLL HR+V+ + Sbjct: 64 QGESGWRAYVPWPRLIANDITVGNPEWAKQ-PNVATIHQLTFVLEALPLLAHRIVIPSVT 122 Query: 125 MDTPMLALERDAQGRRSWRLH------DPDRPSPWRLEVLHSSFSNGDLVYVNRLLDLDL 178 +DTP +ALERD Q R +W + D +PS W+L++ +FS G L + + + L Sbjct: 123 LDTPAIALERDKQHRNNWTFNLAGSEGDDKKPSDWKLDLREIAFSKGSLALDDDIKRIHL 182 Query: 179 RAKVTSLD----------------DLNAKGPAGG------------------QRFGLQFT 204 A + ++D D AK PA Q +G+ +T Sbjct: 183 TATIDTVDNQALYTAANGTVVKSADQPAKVPAASGAAASDTAAQTPVAPDPQQPYGIAWT 242 Query: 205 ATGTYRKASVNGSGKAGGLLAFTAEHAAFPIQAQALIGKNKAGIDGIINDPRAPAGLDLQ 264 GTY A++ G+GKAGG+L +P+QA +GK + + G + +P + LDL+ Sbjct: 243 VKGTYNNATITGTGKAGGVLRLQDAQRPYPLQADVTVGKTRIDLAGTLTNPASLTALDLR 302 Query: 265 LTLGGNSMSDLYPVTGVLLPQTPAYETRGRLIGTKNDGIWLWTYEKFTGRVGDSDLSGTA 324 L L G SM+ LYP+TGV+LP TP ++TRGRLIG W YEKFTGRVG SDL GT Sbjct: 303 LHLSGASMAQLYPLTGVVLPDTPPFDTRGRLIGELRKQGSTWRYEKFTGRVGGSDLGGTL 362 Query: 325 EYLPRQPK 332 Y R+P+ Sbjct: 363 TYAMREPR 370 >E2SYQ8.1 E2SYQ8_9RALS AsmA family protein Length = 761 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 138/386 (35%), Positives = 204/386 (52%), Gaps = 44/386 (11%) Query: 6 RIALWALAALLLLIAALLIAVATVDWNVARPWVSRKVVELTGRTFAIGGNLKVGYTLGLP 65 ++AL + ++++AA +I V T DWN ARP+++ +V + GR FAI G+L + T P Sbjct: 6 KLALGLVITPVVIVAAAVIFVLTFDWNRARPYLNDRVSQAIGRPFAINGDLVL--TWKKP 63 Query: 66 T-EPGWQRYVPRLRITGDNVRFANPAWASTGPDLLTARRVSVALHPLPLLKHRVVLSELI 124 E GW+ YVP R +++ NP WA P++ T R+++ L LPLL HR+V+ + Sbjct: 64 EGESGWRAYVPWPRFIANDITVGNPDWAKQ-PNVATIRQLTFVLEALPLLAHRIVIPSVT 122 Query: 125 MDTPMLALERDAQGRRSWRLH------DPDRPSPWRLEVLHSSFSNGDLVYVNRLLDLDL 178 +DTP +ALERD Q R +W + +PS W+L++ +FS G L + + + L Sbjct: 123 LDTPAIALERDKQNRNNWTFDLTRGEGNNKKPSDWKLDLREIAFSRGSLALDDDIKRIHL 182 Query: 179 RAKVTSLDDLNAKGPAGG----------------------------------QRFGLQFT 204 A V ++D+ A G Q +G+ +T Sbjct: 183 TATVDTIDNQTLYTAANGTAIKSADQPAKEPAASGAAASATAAQTPAAPDPQQPYGIAWT 242 Query: 205 ATGTYRKASVNGSGKAGGLLAFTAEHAAFPIQAQALIGKNKAGIDGIINDPRAPAGLDLQ 264 GTY A++ GSGKAGG+L +P+QA +GK + + G + +P + +DL+ Sbjct: 243 VKGTYNNAAITGSGKAGGVLRLQDAQRPYPLQADVTVGKTRIDLAGTLTNPASLTAIDLR 302 Query: 265 LTLGGNSMSDLYPVTGVLLPQTPAYETRGRLIGTKNDGIWLWTYEKFTGRVGDSDLSGTA 324 L L G SM+ LYP+TGV+LP TP ++TRGRLIG W YEKFTGRVG SDL GT Sbjct: 303 LHLSGASMAQLYPLTGVVLPDTPPFDTRGRLIGELRKRGSTWRYEKFTGRVGGSDLGGTL 362 Query: 325 EYLPRQPKLPRPKXVARHDHLAATAA 350 Y R+P+ + H L A A Sbjct: 363 AYTMREPRPQLTGELVSHQLLFADLA 388 >Q8Y1B7.1 Q8Y1B7_RALSO Putative involved in outer membrane biogenesis transmembrane protein Length = 740 Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 129/353 (36%), Positives = 193/353 (54%), Gaps = 33/353 (9%) Query: 16 LLLIAALLIAVATVDWNVARPWVSRKVVELTGRTFAIGGNLKVGYTLGLPTEPGWQRYVP 75 ++++AA ++ V T DWN A+P+++ V + GR FAI G+L + + E GW+ YVP Sbjct: 16 IVIVAAAIVFVLTFDWNRAKPYLNDHVSQAVGRPFAINGDLALTWK-KPEGESGWRAYVP 74 Query: 76 RLRITGDNVRFANPAWASTGPDLLTARRVSVALHPLPLLKHRVVLSELIMDTPMLALERD 135 R+ ++ NP WA P + T +R++ L LPLL HR+V+ + +DTPM+ALERD Sbjct: 75 WPRLIASDIAIGNPDWARQ-PHVATVQRLTFVLEALPLLAHRIVIPSVTLDTPMIALERD 133 Query: 136 AQGRRSWRLH---DPDRPSPWRLEVLHSSFSNGDLVYVNRLLDLDLRAKVTSLDDLNAKG 192 +Q R +W H +PS W+LE+ +FS G + + + + L A + ++D+ Sbjct: 134 SQNRNNWTFHFGAQDSQPSDWKLELREIAFSKGSVQLDDEVKRIHLAATLDTVDNQALYT 193 Query: 193 PAGG----------------------------QRFGLQFTATGTYRKASVNGSGKAGGLL 224 A G Q +G+ +T GTY A++ GSGKAGG+L Sbjct: 194 AASGTAIRGSEPAAPSASGAAASTAPAAPDPQQPYGIAWTVKGTYNNAAIRGSGKAGGVL 253 Query: 225 AFTAEHAAFPIQAQALIGKNKAGIDGIINDPRAPAGLDLQLTLGGNSMSDLYPVTGVLLP 284 +P+QA +GK + + G + +P + LDL+L L G SM+ LYP+TGV+LP Sbjct: 254 RLQDARRPYPLQADVTVGKTRIDLAGTLTNPSSLTALDLRLHLSGASMAHLYPLTGVVLP 313 Query: 285 QTPAYETRGRLIGTKNDGIWLWTYEKFTGRVGDSDLSGTAEYLPRQPKLPRPK 337 TP ++TRGRLIG W YE+FTGRVG SDL GT + R RP+ Sbjct: 314 DTPPFDTRGRLIGELRRQGSSWRYEQFTGRVGGSDLGGTLTFAMRPEPGQRPQ 366 >C5CYR3.1 C5CYR3_VARPS AsmA family protein Length = 669 Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 123/316 (38%), Positives = 185/316 (58%), Gaps = 13/316 (4%) Query: 19 IAALLIAVATVDWNVARPWVSRKVVELTGRTFAIGGNLKVGYTLGLPTEPGWQRYVPRLR 78 IA LL + DWN ARPW++++V E TGR FAI G+L + ++ E GW+R+VP R Sbjct: 25 IAVLL----SFDWNRARPWINQRVSEATGRPFAIRGDLALQWS-SPEAETGWRRWVPWPR 79 Query: 79 ITGDNVRFANPAWASTGPDLLTARRVSVALHPLPLLKHRVVLSELIMDTPMLALERDAQG 138 ++ ++ N W TGP L R+++ +L+PLPLL H + + L + P+L+LER A+G Sbjct: 80 LSAQDITLGNADWGKTGPHLAEIRQLTFSLNPLPLLNHTIRIPTLELAGPVLSLERTAEG 139 Query: 139 RRSWRLHDPD--RPSPWRLEVLHSSFSNGDLVYVNRLLDLDLRAKVTSLDDLNAKGPAGG 196 + +W L PS W+L++ S G + + LDL+ + SL +A+G Sbjct: 140 KNNWTLAAGGGAEPSSWKLDLQRLVLSQGTVKLADATARLDLKVDIDSLPAESAEG---- 195 Query: 197 QRFGLQFTATGTYRKASVNGSGKAGGLLAFTAEHAAFPIQAQALIGKNKAGIDGIINDPR 256 +G+ + GT+R+ V GSGKAG +L+ + +P+QA +G + I G + P Sbjct: 196 --YGIGWKLGGTFRQTPVQGSGKAGAVLSLQQDTKPYPLQAGVQVGATRIDIAGTLTKPD 253 Query: 257 APAGLDLQLTLGGNSMSDLYPVTGVLLPQTPAYETRGRLIGTKNDGIWLWTYEKFTGRVG 316 A A LDL+L L G SM+ LYP+TG+ LP TP + T G L+G + W YE F GRVG Sbjct: 254 ALAALDLRLKLSGASMAHLYPITGITLPNTPPFSTEGHLVGKLDKAGGRWLYENFKGRVG 313 Query: 317 DSDLSGTAEYLPRQPK 332 SD++GT EY+ +QP+ Sbjct: 314 ASDIAGTLEYVSQQPR 329 >A3RYB0.1 A3RYB0_RALSO Probable transmembrane Length = 749 Score = 226 bits (577), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 135/370 (36%), Positives = 199/370 (53%), Gaps = 41/370 (11%) Query: 6 RIALWALAALLLLIAALLIAVATVDWNVARPWVSRKVVELTGRTFAIGGNLKVGYTLGLP 65 R+ L + ++++AA ++ V T DW+ A+P+++ V + GR FAI G+L + T P Sbjct: 6 RVILGLVITPVVIMAAAVVFVLTFDWSRAKPYLNDHVSQAIGRPFAINGDLSL--TWKKP 63 Query: 66 T-EPGWQRYVPRLRITGDNVRFANPAWASTGPDLLTARRVSVALHPLPLLKHRVVLSELI 124 E GW+ YVP R+ +++ NP W + P T +R++ L LPLL HR+V+ + Sbjct: 64 EGESGWRAYVPWPRLIANDITIGNPDW-TRRPHAATVQRLTFVLEALPLLAHRIVIPSVT 122 Query: 125 MDTPMLALERDAQGRRSWRLH---DPDRPSPWRLEVLHSSFSNGDLVYVNRLLDLDLRAK 181 +DTP++ALERD Q R +W H +PS W+LE+ +FS G + + + + L A Sbjct: 123 LDTPVVALERDNQNRNNWTFHLGTQDSKPSDWKLELREIAFSKGSVQLDDDIKRIHLAAT 182 Query: 182 VTSLDDLNAKGPAGG----------------------------------QRFGLQFTATG 207 V ++D+ A G Q +GL +T G Sbjct: 183 VDTVDNQTLYTAANGTAIGGSEQPPMVPTASGAAASGAAAKAPVAADPQQPYGLAWTVKG 242 Query: 208 TYRKASVNGSGKAGGLLAFTAEHAAFPIQAQALIGKNKAGIDGIINDPRAPAGLDLQLTL 267 TY A+++G GKAGG+L H +P+QA IGK + + G + +P + LDL+L L Sbjct: 243 TYNNAAIHGGGKAGGVLRLQDAHRPYPLQADVTIGKTRIDLAGTLTNPASLTALDLRLHL 302 Query: 268 GGNSMSDLYPVTGVLLPQTPAYETRGRLIGTKNDGIWLWTYEKFTGRVGDSDLSGTAEYL 327 G SM+ LYP+TGV+LP TP ++TRGRLIG W YEKFTGRVG SDLSGT + Sbjct: 303 SGASMAHLYPLTGVVLPDTPPFDTRGRLIGELRRQGSSWRYEKFTGRVGGSDLSGTLTFA 362 Query: 328 PRQPKLPRPK 337 R RP+ Sbjct: 363 MRPTPGQRPQ 372