BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0061.p         (83 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IQI5.1 D8IQI5_HERSS LytR/AlgR family two component response re...   125   2e-27
B2UAV5.1 B2UAV5_RALPJ Two component transcriptional regulator, L...   114   5e-24
C6BHH2.1 C6BHH2_RALP1 Two component transcriptional regulator, L...   114   6e-24
E2T2C4.1 E2T2C4_9RALS Transcriptional regulator protein               114   6e-24
B3R2J6.1 B3R2J6_CUPTR Putative RESPONSE REGULATOR; LytTr family       113   8e-24

>D8IQI5.1 D8IQI5_HERSS LytR/AlgR family two component response regulator
           protein
          Length = 268

 Score =  125 bits (315), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 59/74 (79%), Positives = 69/74 (93%)

Query: 1   MIRAAVGNQVRLIPVDDVVYFEATDKYVNVVTADGEALIRTSLRELIPQLDPERFWQVHR 60
           +IRAAVGN+ RLIPV++V+YFEATDKYVNVVTADG+ALIRTSLRELIPQLDP +FWQ+HR
Sbjct: 165 VIRAAVGNRTRLIPVEEVIYFEATDKYVNVVTADGQALIRTSLRELIPQLDPGQFWQIHR 224

Query: 61  GTVVQIAEVAAAPR 74
           GTVVQ+ +V AA R
Sbjct: 225 GTVVQVRKVEAAVR 238


>B2UAV5.1 B2UAV5_RALPJ Two component transcriptional regulator, LytTR family
          Length = 277

 Score =  114 bits (285), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 52/72 (72%), Positives = 62/72 (86%)

Query: 1   MIRAAVGNQVRLIPVDDVVYFEATDKYVNVVTADGEALIRTSLRELIPQLDPERFWQVHR 60
            I+A VG +VR IPVDDV+Y EATDKYVNVV+A GE+LIRTSLR+L+ QLDPE FWQVHR
Sbjct: 174 FIKALVGQEVRFIPVDDVIYLEATDKYVNVVSASGESLIRTSLRDLLTQLDPEHFWQVHR 233

Query: 61  GTVVQIAEVAAA 72
           GTVV +A V++A
Sbjct: 234 GTVVNVAHVSSA 245


>C6BHH2.1 C6BHH2_RALP1 Two component transcriptional regulator, LytTR family
          Length = 277

 Score =  114 bits (284), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 52/72 (72%), Positives = 62/72 (86%)

Query: 1   MIRAAVGNQVRLIPVDDVVYFEATDKYVNVVTADGEALIRTSLRELIPQLDPERFWQVHR 60
            I+A VG +VR IPVDDV+Y EATDKYVNVV+A GE+LIRTSLR+L+ QLDPE FWQVHR
Sbjct: 174 FIKALVGQEVRFIPVDDVIYLEATDKYVNVVSASGESLIRTSLRDLLTQLDPEHFWQVHR 233

Query: 61  GTVVQIAEVAAA 72
           GTVV +A V++A
Sbjct: 234 GTVVNVAHVSSA 245


>E2T2C4.1 E2T2C4_9RALS Transcriptional regulator protein
          Length = 277

 Score =  114 bits (284), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 52/72 (72%), Positives = 62/72 (86%)

Query: 1   MIRAAVGNQVRLIPVDDVVYFEATDKYVNVVTADGEALIRTSLRELIPQLDPERFWQVHR 60
            I+A VG +VR IPVDDV+Y EATDKYVNVV+A GE+LIRTSLR+L+ QLDPE FWQVHR
Sbjct: 174 FIKALVGQEVRFIPVDDVIYLEATDKYVNVVSASGESLIRTSLRDLLTQLDPEHFWQVHR 233

Query: 61  GTVVQIAEVAAA 72
           GTVV +A V++A
Sbjct: 234 GTVVNVAHVSSA 245


>B3R2J6.1 B3R2J6_CUPTR Putative RESPONSE REGULATOR; LytTr family
          Length = 274

 Score =  113 bits (283), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 54/72 (75%), Positives = 62/72 (86%)

Query: 1   MIRAAVGNQVRLIPVDDVVYFEATDKYVNVVTADGEALIRTSLRELIPQLDPERFWQVHR 60
            I+A VG +VR+IPVD+V+Y EATDKYVNVV+  GEALIRTSLREL  QLDPERFWQVHR
Sbjct: 171 FIKALVGQEVRIIPVDEVIYLEATDKYVNVVSGAGEALIRTSLRELTQQLDPERFWQVHR 230

Query: 61  GTVVQIAEVAAA 72
           GTVV I+ VA+A
Sbjct: 231 GTVVNISCVASA 242