BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0060.p         (161 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IQI5.1 D8IQI5_HERSS LytR/AlgR family two component response re...   166   1e-39
A1WK73.1 A1WK73_VEREI Response regulator receiver protein             158   2e-37
E8TXM3.1 E8TXM3_ALIDB LytTr DNA-binding region protein                155   2e-36
D8VMQ1.1 D8VMQ1_9ZZZZ LytTR family transcriptional regulator          145   2e-33
B9PCF8.1 B9PCF8_POPTR Predicted protein                               143   7e-33

>D8IQI5.1 D8IQI5_HERSS LytR/AlgR family two component response regulator
           protein
          Length = 268

 Score =  166 bits (420), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 86/144 (59%), Positives = 108/144 (75%), Gaps = 4/144 (2%)

Query: 10  ALIAEDEALLADTLSAQLQRLWPGLDIAGIVSNGMAAVEQALALQPDVLFLDIRMPGQSG 69
           ALIAEDE LLA  L   LQR WP L+   + +NG+ A+E AL   PDVLFLDIRMPG SG
Sbjct: 5   ALIAEDEPLLARALQNTLQRCWPELETPRLAANGVQALEMALESLPDVLFLDIRMPGHSG 64

Query: 70  LEAARELADEWPHQRPFPLLVFVTAYDDYAIQAFEQAAIDYVLKPANDERLALTVARLQT 129
           LE ARELA++WP ++PFPL+VFVTAYD++A++AFE+AAIDY+LKP N+ERL  TV RL+ 
Sbjct: 65  LEVARELAEQWPQRQPFPLIVFVTAYDEHALEAFERAAIDYLLKPVNEERLGKTVQRLRA 124

Query: 130 ----RLKNTNDQGLEQVLAQLXQV 149
               R  ++ +  LEQ LAQL Q+
Sbjct: 125 LLAQRAASSQELHLEQALAQLRQL 148


>A1WK73.1 A1WK73_VEREI Response regulator receiver protein
          Length = 276

 Score =  158 bits (400), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 88/147 (59%), Positives = 101/147 (68%), Gaps = 6/147 (4%)

Query: 6   PPARALIAEDEALLADTLSAQLQRLWPGLDIAGIVSNGMAAVEQALALQPDVLFLDIRMP 65
           P  RALIAEDE LLA  L  +L R WPGL I   V +G++AV QALALQP++LF DIRMP
Sbjct: 4   PAPRALIAEDEPLLAAALQQELSRAWPGLQIVATVGDGLSAVRQALALQPELLFFDIRMP 63

Query: 66  GQSGLEAARELADEW----PHQRPFPLLVFVTAYDDYAIQAFEQAAIDYVLKPANDERLA 121
           GQSGL+AA ELA++W    P  RPFP LVFVTAYD YA+QAFE  AIDY+LKP    RL 
Sbjct: 64  GQSGLDAAVELAEDWPGTGPSARPFPALVFVTAYDQYAVQAFEAQAIDYLLKPIQPARLQ 123

Query: 122 LTVARLQTRLKNTNDQG--LEQVLAQL 146
            TV +LQ  L N       LE  +AQL
Sbjct: 124 KTVQKLQQALANHAPYAIDLEATMAQL 150


>E8TXM3.1 E8TXM3_ALIDB LytTr DNA-binding region protein
          Length = 268

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 85/141 (60%), Positives = 99/141 (70%), Gaps = 1/141 (0%)

Query: 10  ALIAEDEALLADTLSAQLQRLWPGLDIAGIVSNGMAAVEQALALQPDVLFLDIRMPGQSG 69
           ALIAEDE LLA  L  +L R WPGL IA  V +G++AV +AL L PDVLF DIRMPGQSG
Sbjct: 5   ALIAEDEPLLAAALQQELARAWPGLAIAATVGDGLSAVREALRLMPDVLFFDIRMPGQSG 64

Query: 70  LEAARELADEW-PHQRPFPLLVFVTAYDDYAIQAFEQAAIDYVLKPANDERLALTVARLQ 128
           L+AA ELAD W    RPFP LVFVTAYD YA+QAFE  A+DY+LKP    RL  TV +L+
Sbjct: 65  LDAAVELADAWDTGARPFPALVFVTAYDQYAVQAFEAQAVDYLLKPVQPGRLDRTVHKLR 124

Query: 129 TRLKNTNDQGLEQVLAQLXQV 149
             L+      LEQ LAQL ++
Sbjct: 125 QALQQRASPALEQTLAQLREL 145


>D8VMQ1.1 D8VMQ1_9ZZZZ LytTR family transcriptional regulator
          Length = 272

 Score =  145 bits (367), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 85/145 (58%), Positives = 96/145 (66%), Gaps = 7/145 (4%)

Query: 8   ARALIAEDEALLADTLSAQLQRLWPGLDIAGIVSNGMAAVEQALALQPDVLFLDIRMPGQ 67
           A A+IAEDE LLA  L A+L R WP L I   V +G++AV  AL LQPDVLF DIRMPG 
Sbjct: 4   ATAIIAEDEPLLAQALQAELARAWPDLRILRTVGDGLSAVAAALELQPDVLFFDIRMPGL 63

Query: 68  SGLEAARELADEWPHQR------PFPLLVFVTAYDDYAIQAFEQAAIDYVLKPANDERLA 121
            GLEAA ELAD WP         PFP LV VTAYD YA+QAFE  A+DY+LKP   +RL 
Sbjct: 64  DGLEAAAELADRWPTANDSSDAPPFPALVLVTAYDQYAVQAFEAQALDYLLKPVQAQRLQ 123

Query: 122 LTVARLQTRLKNTNDQGLEQVLAQL 146
            TVA+LQ  L   + Q LE  LAQL
Sbjct: 124 KTVAKLQQTLAQPDPQ-LEATLAQL 147


>B9PCF8.1 B9PCF8_POPTR Predicted protein
          Length = 270

 Score =  143 bits (361), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 82/123 (66%), Positives = 94/123 (76%)

Query: 9   RALIAEDEALLADTLSAQLQRLWPGLDIAGIVSNGMAAVEQALALQPDVLFLDIRMPGQS 68
           RALIAEDE LLA+ L   L R WP L IA +V +G++A  QALALQPDVLF DIRMPGQS
Sbjct: 6   RALIAEDEPLLAEDLRQALARAWPELQIAAMVGDGLSAARQALALQPDVLFFDIRMPGQS 65

Query: 69  GLEAARELADEWPHQRPFPLLVFVTAYDDYAIQAFEQAAIDYVLKPANDERLALTVARLQ 128
           GLEAA ELAD WP  +PFP+LVFVTAYD YA+ AFE  A+DY+LKP   ERLA +V RL+
Sbjct: 66  GLEAAAELADAWPEAQPFPILVFVTAYDQYAMDAFEAQAVDYLLKPVQPERLARSVQRLR 125

Query: 129 TRL 131
             L
Sbjct: 126 ELL 128