BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0024.p (422 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8J040.1 D8J040_HERSS Transcription termination factor Rho EC=3.... 841 0.0 A4G312.1 A4G312_HERAR Transcription termination factor Rho EC=3.... 829 0.0 A6SVL5.1 A6SVL5_JANMA Transcription termination factor Rho EC=3.... 828 0.0 C3X7C7.1 C3X7C7_OXAFO Transcription termination factor Rho EC=3.... 795 0.0 C3X6Y2.1 C3X6Y2_OXAFO Transcription termination factor Rho EC=3.... 792 0.0 >D8J040.1 D8J040_HERSS Transcription termination factor Rho EC=3.6.4.- Length = 420 Score = 841 bits (2172), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/420 (97%), Positives = 418/420 (99%) Query: 1 MHLSELKALHVSALLEMAIGLDIDNAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPD 60 MHLSELKA+HVSALLEMAI LDI+NAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPD Sbjct: 1 MHLSELKAMHVSALLEMAISLDIENAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPD 60 Query: 61 GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN 120 GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN Sbjct: 61 GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN 120 Query: 121 GEAPEASKHRILFENLTPLHPNKIMQLEREMRGEENITGRIIDLIAPIGRGQRGLLVASP 180 GE PEASKHRILFENLTPLHPNK++QLER+MRGEENITGRIIDLIAP+GRGQRGLLVASP Sbjct: 121 GEPPEASKHRILFENLTPLHPNKLLQLERDMRGEENITGRIIDLIAPVGRGQRGLLVASP 180 Query: 181 KSGKSVMLQHIAHAITTNHPDTVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHV 240 KSGKSVMLQHIAHAITTNHPDTVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHV Sbjct: 181 KSGKSVMLQHIAHAITTNHPDTVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHV 240 Query: 241 QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF 300 QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF Sbjct: 241 QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF 300 Query: 301 FGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINL 360 FGAARN+EEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINL Sbjct: 301 FGAARNVEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINL 360 Query: 361 SKSGTRREELLIKPDQLQKIWVLRKLMYDMDEIEAMEFILDKMKSTKNNAEFFDMMRRGS 420 SKSGTRREELLIKPDQLQKIWVLRKLMYDMDEIEAMEFILDKMKSTKNNAEFFDMMRRG+ Sbjct: 361 SKSGTRREELLIKPDQLQKIWVLRKLMYDMDEIEAMEFILDKMKSTKNNAEFFDMMRRGN 420 >A4G312.1 A4G312_HERAR Transcription termination factor Rho EC=3.6.4.- Length = 421 Score = 829 bits (2141), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/420 (96%), Positives = 415/420 (98%) Query: 1 MHLSELKALHVSALLEMAIGLDIDNAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPD 60 MHLSELKALHVSALLEMAI LDIDNAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPD Sbjct: 1 MHLSELKALHVSALLEMAISLDIDNAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPD 60 Query: 61 GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN 120 GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN Sbjct: 61 GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN 120 Query: 121 GEAPEASKHRILFENLTPLHPNKIMQLEREMRGEENITGRIIDLIAPIGRGQRGLLVASP 180 GEAPEASKHRILFENLTPLHPNK + LER+MRGEENITGR+IDLIAPIG+GQRGLLVASP Sbjct: 121 GEAPEASKHRILFENLTPLHPNKPLLLERDMRGEENITGRVIDLIAPIGKGQRGLLVASP 180 Query: 181 KSGKSVMLQHIAHAITTNHPDTVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHV 240 KSGKSV+LQHIAHAITTNHPD VMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHV Sbjct: 181 KSGKSVILQHIAHAITTNHPDVVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHV 240 Query: 241 QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF 300 QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF Sbjct: 241 QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF 300 Query: 301 FGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINL 360 FGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINL Sbjct: 301 FGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINL 360 Query: 361 SKSGTRREELLIKPDQLQKIWVLRKLMYDMDEIEAMEFILDKMKSTKNNAEFFDMMRRGS 420 +KSGTRREELLIKPDQLQKIWVLRKL+Y MDEIEAMEFILDKMK+TKNNAEFFDMMRRG+ Sbjct: 361 NKSGTRREELLIKPDQLQKIWVLRKLLYGMDEIEAMEFILDKMKATKNNAEFFDMMRRGN 420 >A6SVL5.1 A6SVL5_JANMA Transcription termination factor Rho EC=3.6.4.- Length = 421 Score = 828 bits (2140), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/420 (96%), Positives = 415/420 (98%) Query: 1 MHLSELKALHVSALLEMAIGLDIDNAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPD 60 MHLSELKALHVSALLEMAI LDIDNAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPD Sbjct: 1 MHLSELKALHVSALLEMAISLDIDNAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPD 60 Query: 61 GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN 120 GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN Sbjct: 61 GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN 120 Query: 121 GEAPEASKHRILFENLTPLHPNKIMQLEREMRGEENITGRIIDLIAPIGRGQRGLLVASP 180 GE+PEASKHRILFENLTPLHPNK + LER+MRGEENITGRIIDLIAPIG+GQRGLLVASP Sbjct: 121 GESPEASKHRILFENLTPLHPNKPLLLERDMRGEENITGRIIDLIAPIGKGQRGLLVASP 180 Query: 181 KSGKSVMLQHIAHAITTNHPDTVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHV 240 KSGKSVMLQHIAHAITTNHP+ VMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHV Sbjct: 181 KSGKSVMLQHIAHAITTNHPEAVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHV 240 Query: 241 QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF 300 QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF Sbjct: 241 QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF 300 Query: 301 FGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINL 360 FGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINL Sbjct: 301 FGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINL 360 Query: 361 SKSGTRREELLIKPDQLQKIWVLRKLMYDMDEIEAMEFILDKMKSTKNNAEFFDMMRRGS 420 +KSGTRREELLIKPDQLQKIWVLRKL+Y MDEIEAMEFILDKMK+TKNNAEFFDMMRRG+ Sbjct: 361 NKSGTRREELLIKPDQLQKIWVLRKLLYGMDEIEAMEFILDKMKATKNNAEFFDMMRRGN 420 >C3X7C7.1 C3X7C7_OXAFO Transcription termination factor Rho EC=3.6.4.- Length = 420 Score = 795 bits (2053), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/419 (90%), Positives = 409/419 (97%) Query: 1 MHLSELKALHVSALLEMAIGLDIDNAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPD 60 MHLSELK+LHVSALLEMA+GL+IDNAAR+RKQELMFAILKKRAK+GEQ++GDGALE+LPD Sbjct: 1 MHLSELKSLHVSALLEMALGLEIDNAARMRKQELMFAILKKRAKAGEQVYGDGALEILPD 60 Query: 61 GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN 120 GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN Sbjct: 61 GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN 120 Query: 121 GEAPEASKHRILFENLTPLHPNKIMQLEREMRGEENITGRIIDLIAPIGRGQRGLLVASP 180 G PE SKHR+LFENLTPLHP++ ++LERE+ +ENITGRIID+IAPIG+GQRGLLVASP Sbjct: 121 GAPPEQSKHRLLFENLTPLHPDEPLKLEREISSQENITGRIIDMIAPIGKGQRGLLVASP 180 Query: 181 KSGKSVMLQHIAHAITTNHPDTVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHV 240 KSGK+VMLQH+AHAITTNHPD + VLLIDERPEEVTEMQRSVRGEV+ASTFDEPATRHV Sbjct: 181 KSGKTVMLQHMAHAITTNHPDVTLFVLLIDERPEEVTEMQRSVRGEVIASTFDEPATRHV 240 Query: 241 QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF 300 QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF Sbjct: 241 QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF 300 Query: 301 FGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINL 360 FGAARN+EEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYP+INL Sbjct: 301 FGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPSINL 360 Query: 361 SKSGTRREELLIKPDQLQKIWVLRKLMYDMDEIEAMEFILDKMKSTKNNAEFFDMMRRG 419 +KSGTRREELLIKPDQLQKIW+LRKL+Y MDEIEAMEFILDKMK+TKNNA+FFD+MRRG Sbjct: 361 NKSGTRREELLIKPDQLQKIWILRKLLYGMDEIEAMEFILDKMKATKNNADFFDLMRRG 419 >C3X6Y2.1 C3X6Y2_OXAFO Transcription termination factor Rho EC=3.6.4.- Length = 420 Score = 792 bits (2046), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/419 (90%), Positives = 408/419 (97%) Query: 1 MHLSELKALHVSALLEMAIGLDIDNAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPD 60 MHLSELK+LHVSALLEMA+ LDIDNAAR+RKQELMFAILKKRAK+GEQ++GDGALE+LPD Sbjct: 1 MHLSELKSLHVSALLEMALSLDIDNAARMRKQELMFAILKKRAKAGEQVYGDGALEILPD 60 Query: 61 GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN 120 GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN Sbjct: 61 GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN 120 Query: 121 GEAPEASKHRILFENLTPLHPNKIMQLEREMRGEENITGRIIDLIAPIGRGQRGLLVASP 180 G PEASKHR+LFENLTPLHP++ ++LER++ +ENITGRIID+IAPIG+GQRGLLVASP Sbjct: 121 GAPPEASKHRMLFENLTPLHPDEPLKLERDISSQENITGRIIDMIAPIGKGQRGLLVASP 180 Query: 181 KSGKSVMLQHIAHAITTNHPDTVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHV 240 KSGK+V+LQH+AHAIT NHPD + VLLIDERPEEVTEMQRSVRGEV+ASTFDEPATRHV Sbjct: 181 KSGKTVILQHMAHAITANHPDVTLFVLLIDERPEEVTEMQRSVRGEVIASTFDEPATRHV 240 Query: 241 QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF 300 QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF Sbjct: 241 QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF 300 Query: 301 FGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINL 360 FGAARN+EEGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINL Sbjct: 301 FGAARNVEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINL 360 Query: 361 SKSGTRREELLIKPDQLQKIWVLRKLMYDMDEIEAMEFILDKMKSTKNNAEFFDMMRRG 419 +KSGTRREELLIKPDQLQKIW+LRKL+Y MDEIEAMEFILDKMK+TKNNA+FFD+MRRG Sbjct: 361 NKSGTRREELLIKPDQLQKIWILRKLLYGMDEIEAMEFILDKMKATKNNADFFDLMRRG 419