BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0009.p (323 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8J030.1 D8J030_HERSS Site specific integrase/recombinase protein 517 e-145 A6SV67.1 A6SV67_JANMA Integrase/recombinase 516 e-144 A4G2A1.1 A4G2A1_HERAR Tyrosine recombinase XerD 512 e-143 F1VYR7.1 F1VYR7_9BURK Site-specific tyrosine recombinase 487 e-135 C3XBA0.1 C3XBA0_OXAFO Tyrosine recombinase XerD 451 e-125 >D8J030.1 D8J030_HERSS Site specific integrase/recombinase protein Length = 307 Score = 517 bits (1331), Expect = e-145, Method: Compositional matrix adjust. Identities = 250/302 (82%), Positives = 270/302 (89%) Query: 22 PKVQATGASLAAIDEFCDTLWLEDGLAKNSLEAYRRDMTLFAHWLQTERRKDLLATQAED 81 PK++A S AIDEFCD+LWLEDGL+KN+LEAYRRDMT +AHWL ER K L TQAED Sbjct: 6 PKIEAPAVSREAIDEFCDSLWLEDGLSKNTLEAYRRDMTRYAHWLYQERAKALYETQAED 65 Query: 82 LNAYFAARHADTKASSSNRRLAVLKRFFLLALRQNRISEDPCLRLRSAKQPPRFPKVLSE 141 LNAYFAARH TK SSSNRRLAVLKRFF LALRQ+ ++ DPCL+LRSA+QP RFPK LSE Sbjct: 66 LNAYFAARHDQTKPSSSNRRLAVLKRFFQLALRQHHVAADPCLKLRSARQPQRFPKTLSE 125 Query: 142 GQVEALLAAPDVTTPLGLRDRTMLELMYASGLRVSELVLLKSVEVGMNEGVLRITGKGNK 201 GQVEALLAAPDV+TPLGLRDR M+ELMYASGLRVSELVLLKS+EVGMNEGVLR+TGKG+K Sbjct: 126 GQVEALLAAPDVSTPLGLRDRAMIELMYASGLRVSELVLLKSIEVGMNEGVLRVTGKGSK 185 Query: 202 TRLVPFGEEARSWIERYLREARLLILEGQVDDALFVTARGGAMTRQMFWTLIKKYALQGD 261 TRLVPFGEEA SW+ RYL EAR IL+GQVDDALFVTARGG MTRQMFWTLIKKYALQ Sbjct: 186 TRLVPFGEEAGSWLMRYLAEARAQILQGQVDDALFVTARGGPMTRQMFWTLIKKYALQAG 245 Query: 262 IRAPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKKLHAEHHP 321 + A LSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLK+LHA HHP Sbjct: 246 VTARLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHAAHHP 305 Query: 322 RG 323 RG Sbjct: 306 RG 307 >A6SV67.1 A6SV67_JANMA Integrase/recombinase Length = 301 Score = 516 bits (1329), Expect = e-144, Method: Compositional matrix adjust. Identities = 249/294 (84%), Positives = 265/294 (90%) Query: 30 SLAAIDEFCDTLWLEDGLAKNSLEAYRRDMTLFAHWLQTERRKDLLATQAEDLNAYFAAR 89 S + IDEFCDTLWLEDGLAKNSLEAYRRD+ LFA WLQ ER K LLA EDLN YF A+ Sbjct: 8 SQSEIDEFCDTLWLEDGLAKNSLEAYRRDLRLFATWLQQERGKSLLAAHTEDLNGYFFAK 67 Query: 90 HADTKASSSNRRLAVLKRFFLLALRQNRISEDPCLRLRSAKQPPRFPKVLSEGQVEALLA 149 HA TKA+SSNRRLAVLKRF+ LALRQN+I +DPCLRLRSAKQPPR PK LSE QVEALLA Sbjct: 68 HATTKATSSNRRLAVLKRFYQLALRQNKIKDDPCLRLRSAKQPPRMPKTLSEAQVEALLA 127 Query: 150 APDVTTPLGLRDRTMLELMYASGLRVSELVLLKSVEVGMNEGVLRITGKGNKTRLVPFGE 209 APDV TPLGLRDRTMLELMYASGLRV+ELVLLKSVEVGMNEGVLR+TGKG KTRL+PFGE Sbjct: 128 APDVNTPLGLRDRTMLELMYASGLRVTELVLLKSVEVGMNEGVLRVTGKGGKTRLIPFGE 187 Query: 210 EARSWIERYLREARLLILEGQVDDALFVTARGGAMTRQMFWTLIKKYALQGDIRAPLSPH 269 EAR+WIERYL+EAR IL GQ+DDALFVTARGGAMTRQMFWTLIKK+A DI APLSPH Sbjct: 188 EARAWIERYLKEARGAILNGQMDDALFVTARGGAMTRQMFWTLIKKHAAAADINAPLSPH 247 Query: 270 TLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKKLHAEHHPRG 323 TLRHAFATHLLNHGADLRVVQLLLGH+DISTTQIYTHVARERLK+LH HHPRG Sbjct: 248 TLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKRLHQMHHPRG 301 >A4G2A1.1 A4G2A1_HERAR Tyrosine recombinase XerD Length = 309 Score = 512 bits (1318), Expect = e-143, Method: Compositional matrix adjust. Identities = 249/294 (84%), Positives = 266/294 (90%) Query: 30 SLAAIDEFCDTLWLEDGLAKNSLEAYRRDMTLFAHWLQTERRKDLLATQAEDLNAYFAAR 89 S A IDEFCDTLWLEDGLAKNSLEAYRRD+ LFA WLQ ER K LLA A+D+NAYF AR Sbjct: 16 SQAQIDEFCDTLWLEDGLAKNSLEAYRRDLRLFAVWLQAERGKTLLAAHADDVNAYFFAR 75 Query: 90 HADTKASSSNRRLAVLKRFFLLALRQNRISEDPCLRLRSAKQPPRFPKVLSEGQVEALLA 149 H TKA+SSNRRLAVLKRF+ LALRQNRIS+DPCL++RSAKQP R PK LSE QVEALLA Sbjct: 76 HEVTKATSSNRRLAVLKRFYQLALRQNRISDDPCLKMRSAKQPLRIPKTLSEAQVEALLA 135 Query: 150 APDVTTPLGLRDRTMLELMYASGLRVSELVLLKSVEVGMNEGVLRITGKGNKTRLVPFGE 209 APDVTTPLGLRDRTMLELMYASGLRV+ELVLLKS+EVGMNEGVLRITGKG KTRLVPFGE Sbjct: 136 APDVTTPLGLRDRTMLELMYASGLRVTELVLLKSIEVGMNEGVLRITGKGGKTRLVPFGE 195 Query: 210 EARSWIERYLREARLLILEGQVDDALFVTARGGAMTRQMFWTLIKKYALQGDIRAPLSPH 269 EAR WIERYL+EAR LIL+GQ+DDALFVTARG AMTRQMFWTLIKK+A +I APLSPH Sbjct: 196 EARVWIERYLKEARPLILDGQIDDALFVTARGAAMTRQMFWTLIKKHAAAAEINAPLSPH 255 Query: 270 TLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKKLHAEHHPRG 323 TLRHAFATHLLNHGADLRVVQ+LLGH+DISTTQIYTHVARERLK LH HHPRG Sbjct: 256 TLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERLKHLHQIHHPRG 309 >F1VYR7.1 F1VYR7_9BURK Site-specific tyrosine recombinase Length = 304 Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust. Identities = 232/290 (80%), Positives = 257/290 (88%) Query: 34 IDEFCDTLWLEDGLAKNSLEAYRRDMTLFAHWLQTERRKDLLATQAEDLNAYFAARHADT 93 ID FCDTLWLEDGLAKNSLEAYRRD+T FA WL + LLA D+NAYFAARH + Sbjct: 15 IDTFCDTLWLEDGLAKNSLEAYRRDLTAFALWLAQASQTGLLAVTGADINAYFAARHDAS 74 Query: 94 KASSSNRRLAVLKRFFLLALRQNRISEDPCLRLRSAKQPPRFPKVLSEGQVEALLAAPDV 153 KA+++NRRLAVLKRF+ LALR +IS+DPCL+L SAKQPPRFPK LSE VEALLAAPDV Sbjct: 75 KATTANRRLAVLKRFYQLALRNKQISDDPCLKLHSAKQPPRFPKTLSEANVEALLAAPDV 134 Query: 154 TTPLGLRDRTMLELMYASGLRVSELVLLKSVEVGMNEGVLRITGKGNKTRLVPFGEEARS 213 +TPLGLRDRTMLELMYASGLRV+ELVLLKS+E+ +N+GV+R+TGKGNKTRLVPFGEEARS Sbjct: 135 STPLGLRDRTMLELMYASGLRVTELVLLKSIELSLNDGVVRVTGKGNKTRLVPFGEEARS 194 Query: 214 WIERYLREARLLILEGQVDDALFVTARGGAMTRQMFWTLIKKYALQGDIRAPLSPHTLRH 273 WIERYL EAR IL+GQ+DDALFVTARGG MTRQMFW ++KK A++ DI APLSPHTLRH Sbjct: 195 WIERYLLEARAQILDGQMDDALFVTARGGPMTRQMFWVVVKKCAVRADIHAPLSPHTLRH 254 Query: 274 AFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKKLHAEHHPRG 323 AFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLK LHA HHPRG Sbjct: 255 AFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKVLHAAHHPRG 304 >C3XBA0.1 C3XBA0_OXAFO Tyrosine recombinase XerD Length = 312 Score = 451 bits (1161), Expect = e-125, Method: Compositional matrix adjust. Identities = 221/300 (73%), Positives = 251/300 (83%), Gaps = 1/300 (0%) Query: 25 QATGASLAAIDEFCDTLWLEDGLAKNSLEAYRRDMTLFAHWLQTERRK-DLLATQAEDLN 83 QA+ A+ + +DEFCDT+WLEDGL+KN+L+AYRRD+ LFA WL+ DLL LN Sbjct: 8 QASSANHSFVDEFCDTVWLEDGLSKNTLDAYRRDLLLFARWLEKNCPDIDLLKVDQNHLN 67 Query: 84 AYFAARHADTKASSSNRRLAVLKRFFLLALRQNRISEDPCLRLRSAKQPPRFPKVLSEGQ 143 YF ARHA++KA+S+NRRL VLKRF+ L LR RISE+PCL+L++AKQ RFPK LSE Q Sbjct: 68 DYFWARHAESKATSANRRLTVLKRFYRLQLRLGRISENPCLKLKAAKQAARFPKTLSETQ 127 Query: 144 VEALLAAPDVTTPLGLRDRTMLELMYASGLRVSELVLLKSVEVGMNEGVLRITGKGNKTR 203 VEALL APD LGLRDR M+ELMYASGLRVSELV LK VEVGMNEGVLRI GKG KTR Sbjct: 128 VEALLGAPDQEKSLGLRDRAMIELMYASGLRVSELVDLKLVEVGMNEGVLRIIGKGEKTR 187 Query: 204 LVPFGEEARSWIERYLREARLLILEGQVDDALFVTARGGAMTRQMFWTLIKKYALQGDIR 263 LVPFGEEAR W+ERY+++AR LIL G++ D LFVTARG AMTRQMFWTLIKKYAL+ I Sbjct: 188 LVPFGEEARVWLERYMQDARSLILAGKMSDYLFVTARGTAMTRQMFWTLIKKYALKSGIH 247 Query: 264 APLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKKLHAEHHPRG 323 PLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVA++RLK+LHA HHPRG Sbjct: 248 EPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVAQQRLKQLHAMHHPRG 307