BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0002.p         (93 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8J025.1 D8J025_HERSS TRAP-type C4-dicarboxylate transport syste...   139   2e-31
F1VYR3.1 F1VYR3_9BURK TRAP-type C4-dicarboxylate transport syste...   122   2e-26
D8IYV4.1 D8IYV4_HERSS TRAP-type C4-dicarboxylate-binding peripla...   115   1e-24
Q2W8X6.1 Q2W8X6_MAGSA TRAP-type C4-dicarboxylate transport system     114   6e-24
A4TZC1.1 A4TZC1_9PROT Bacterial extracellular solute-binding pro...   108   2e-22

>D8J025.1 D8J025_HERSS TRAP-type C4-dicarboxylate transport system,
          periplasmic component protein
          Length = 334

 Score =  139 bits (350), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 66/81 (81%), Positives = 73/81 (90%)

Query: 1  MKLKSLVFALAAATIIAGNAFAQAPIIIKFSHVVANDTPKGKGAERFKELAEKATKGRVK 60
          MKLKS++ A+ AA I++ NAFAQ PI+IKFSHVVANDTPKGK AERFKELAEKATKGRVK
Sbjct: 1  MKLKSILLAMTAAAIVSTNAFAQQPIVIKFSHVVANDTPKGKAAERFKELAEKATKGRVK 60

Query: 61 VEVYPNSTLYKDKEELEALXC 81
          +EVYPNSTLYKDKEELEAL  
Sbjct: 61 IEVYPNSTLYKDKEELEALQL 81


>F1VYR3.1 F1VYR3_9BURK TRAP-type C4-dicarboxylate transport system,
          periplasmic component
          Length = 337

 Score =  122 bits (306), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 57/75 (76%), Positives = 64/75 (85%)

Query: 7  VFALAAATIIAGNAFAQAPIIIKFSHVVANDTPKGKGAERFKELAEKATKGRVKVEVYPN 66
            A++AA +++GNA AQ PI+IKFSHVVANDTPKGK AERFKEL EK  KGRVKVE+YPN
Sbjct: 10 TLAMSAALLMSGNAMAQTPIVIKFSHVVANDTPKGKAAERFKELVEKNLKGRVKVELYPN 69

Query: 67 STLYKDKEELEALXC 81
          STLYKDKEELEAL  
Sbjct: 70 STLYKDKEELEALQL 84


>D8IYV4.1 D8IYV4_HERSS TRAP-type C4-dicarboxylate-binding periplasmic
          protein
          Length = 344

 Score =  115 bits (289), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 55/57 (96%), Positives = 56/57 (98%)

Query: 23 QAPIIIKFSHVVANDTPKGKGAERFKELAEKATKGRVKVEVYPNSTLYKDKEELEAL 79
          Q PIIIKFSHVVANDTPKGKGAERFKELAEKAT+GRVKVEVYPNSTLYKDKEELEAL
Sbjct: 31 QQPIIIKFSHVVANDTPKGKGAERFKELAEKATQGRVKVEVYPNSTLYKDKEELEAL 87


>Q2W8X6.1 Q2W8X6_MAGSA TRAP-type C4-dicarboxylate transport system
          Length = 337

 Score =  114 bits (284), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 58/81 (71%), Positives = 67/81 (82%), Gaps = 2/81 (2%)

Query: 1  MKLKSLVFALAAATIIAGNAFAQA--PIIIKFSHVVANDTPKGKGAERFKELAEKATKGR 58
          MKL +L+    AA ++AG+A AQ   PI+IKFSHVVA DTPKGKGAE FK+LAE+ TKGR
Sbjct: 1  MKLGTLIAGAIAACVLAGSAMAQQAQPIVIKFSHVVAPDTPKGKGAEYFKKLAEERTKGR 60

Query: 59 VKVEVYPNSTLYKDKEELEAL 79
          VKVEVYPNS LYKDKEE+EAL
Sbjct: 61 VKVEVYPNSQLYKDKEEMEAL 81


>A4TZC1.1 A4TZC1_9PROT Bacterial extracellular solute-binding protein,
          family 7
          Length = 335

 Score =  108 bits (270), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/79 (67%), Positives = 63/79 (79%)

Query: 1  MKLKSLVFALAAATIIAGNAFAQAPIIIKFSHVVANDTPKGKGAERFKELAEKATKGRVK 60
          MK ++L+  L A  + +G+A A  PI+IKFSHVVA DTPKGK AE FK+LAE+ TKG VK
Sbjct: 1  MKFRTLLGCLVAGVVASGSALAADPIVIKFSHVVAPDTPKGKAAEMFKKLAEERTKGAVK 60

Query: 61 VEVYPNSTLYKDKEELEAL 79
          VEVYPNS LYKDKEE+EAL
Sbjct: 61 VEVYPNSQLYKDKEEMEAL 79