BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0089.p (270 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IY78.1 D8IY78_HERSS Two component transcription regulator protein 442 e-122 Q21UQ5.1 Q21UQ5_RHOFD Two component, sigma54 specific, transcrip... 397 e-109 Q12EH3.1 Q12EH3_POLSJ Two component, sigma54 specific, transcrip... 395 e-108 A1VSP5.1 A1VSP5_POLNA Two component, sigma54 specific, transcrip... 394 e-108 C5T390.1 C5T390_ACIDE Putative two component, sigma54 specific, ... 388 e-106 >D8IY78.1 D8IY78_HERSS Two component transcription regulator protein Length = 466 Score = 442 bits (1136), Expect = e-122, Method: Compositional matrix adjust. Identities = 217/259 (83%), Positives = 235/259 (90%) Query: 12 PEQLLESELFGHVKGAFTGAVEHRKGLFQAADGGTLFLDEIGDMPLPLQVKLLRVLQERT 71 PEQLLESELFGHVKGAFTGAVEHR+GLFQAA GGTLFLDEIGDMPLPLQVKLLRVLQE+T Sbjct: 205 PEQLLESELFGHVKGAFTGAVEHREGLFQAAHGGTLFLDEIGDMPLPLQVKLLRVLQEKT 264 Query: 72 VRPVGANDSTPVDVRILSATHRNLDAAMADGSFREDLYYRLNVVTLSLPLLVERREDIAL 131 VR VGAN + VDVRI+SATHR+L+AAM +G FREDLYYRLNVVTL LP L ERREDIAL Sbjct: 265 VRQVGANQAGEVDVRIISATHRDLEAAMREGQFREDLYYRLNVVTLHLPALEERREDIAL 324 Query: 132 LANHFLQAIAERYQKKLNGFAPDALEILMMASWPGNVRQLYNVVEQVCALSTAPLIPAAL 191 LANHFL+ IA +Y K+L GFAPDALEIL +A WPGNVRQLYNVVEQVCALSTAPLIPA+L Sbjct: 325 LANHFLKTIAAKYPKRLTGFAPDALEILSLAHWPGNVRQLYNVVEQVCALSTAPLIPASL 384 Query: 192 VQRALRVPALEVLRYADAKQRFERDYLIQLLKLTDGNVADAARLADRNRTEFYRLLQKNG 251 VQRALR P L++LRYA+AKQ+FERDYLI+LLKLTDGNV+DAARLADRNRTEFYRLLQKNG Sbjct: 385 VQRALRTPTLDLLRYAEAKQKFERDYLIRLLKLTDGNVSDAARLADRNRTEFYRLLQKNG 444 Query: 252 LDPRLFRGDEEDVAIERQE 270 LDPR FRG EE V RQE Sbjct: 445 LDPRRFRGGEEAVVAGRQE 463 >Q21UQ5.1 Q21UQ5_RHOFD Two component, sigma54 specific, transcriptional regulator, Fis family Length = 477 Score = 397 bits (1020), Expect = e-109, Method: Compositional matrix adjust. Identities = 195/254 (76%), Positives = 221/254 (87%) Query: 12 PEQLLESELFGHVKGAFTGAVEHRKGLFQAADGGTLFLDEIGDMPLPLQVKLLRVLQERT 71 PE LLESELFGHVKGAFTGAV + GLFQAADGGTL LDEIGDMP LQVKLLRVLQER Sbjct: 218 PEPLLESELFGHVKGAFTGAVANHIGLFQAADGGTLLLDEIGDMPPALQVKLLRVLQERM 277 Query: 72 VRPVGANDSTPVDVRILSATHRNLDAAMADGSFREDLYYRLNVVTLSLPLLVERREDIAL 131 VRP+G++ S PVDVRI+SATHR+LD AMA+G FR DLYYRLNVVTLSLP L ERREDIAL Sbjct: 278 VRPLGSSQSIPVDVRIISATHRDLDLAMAEGQFRADLYYRLNVVTLSLPPLSERREDIAL 337 Query: 132 LANHFLQAIAERYQKKLNGFAPDALEILMMASWPGNVRQLYNVVEQVCALSTAPLIPAAL 191 LAN+FL +A++Y+K+L+GFAP+AL L A+WPGNVRQLYNVVEQVCALST+PL+P AL Sbjct: 338 LANYFLVKLADKYKKRLSGFAPEALIALTTAAWPGNVRQLYNVVEQVCALSTSPLVPLAL 397 Query: 192 VQRALRVPALEVLRYADAKQRFERDYLIQLLKLTDGNVADAARLADRNRTEFYRLLQKNG 251 VQRALR P++EVL A+A+QRFERDYL+ LLKLTDGNVADAARLADRNRTEFYRL+QK+G Sbjct: 398 VQRALRSPSVEVLTLAEARQRFERDYLVGLLKLTDGNVADAARLADRNRTEFYRLMQKHG 457 Query: 252 LDPRLFRGDEEDVA 265 L P LF+ D A Sbjct: 458 LTPGLFKADSNGPA 471 >Q12EH3.1 Q12EH3_POLSJ Two component, sigma54 specific, transcriptional regulator, Fis family Length = 466 Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust. Identities = 192/254 (75%), Positives = 218/254 (85%) Query: 12 PEQLLESELFGHVKGAFTGAVEHRKGLFQAADGGTLFLDEIGDMPLPLQVKLLRVLQERT 71 PE LLESELFGHVKGAFT AV KGLFQAADGGTL LDEIGDMP LQVKLLRVLQER Sbjct: 213 PEALLESELFGHVKGAFTDAVASHKGLFQAADGGTLLLDEIGDMPPALQVKLLRVLQERV 272 Query: 72 VRPVGANDSTPVDVRILSATHRNLDAAMADGSFREDLYYRLNVVTLSLPLLVERREDIAL 131 VRP+G++ S PVDVRI+SATHR+LDAAMA+G FR DLYYRLNVVTL+LP L ERREDI L Sbjct: 273 VRPLGSSQSIPVDVRIISATHRDLDAAMAEGQFRADLYYRLNVVTLTLPPLSERREDIPL 332 Query: 132 LANHFLQAIAERYQKKLNGFAPDALEILMMASWPGNVRQLYNVVEQVCALSTAPLIPAAL 191 LANHFL +A +Y K+L+GFAP+A++ L A+WPGNVRQLYNVVEQVCALST PL+P AL Sbjct: 333 LANHFLIKLANKYDKRLSGFAPEAIKALTTAAWPGNVRQLYNVVEQVCALSTTPLVPLAL 392 Query: 192 VQRALRVPALEVLRYADAKQRFERDYLIQLLKLTDGNVADAARLADRNRTEFYRLLQKNG 251 VQRALR P+++VL +A+A+QRFERDYL+ LLKLTDGNVADAARLADRNRTEFYRL+QK+G Sbjct: 393 VQRALRSPSVQVLTFAEARQRFERDYLVGLLKLTDGNVADAARLADRNRTEFYRLMQKHG 452 Query: 252 LDPRLFRGDEEDVA 265 L P F+ D A Sbjct: 453 LTPGHFKADNATAA 466 >A1VSP5.1 A1VSP5_POLNA Two component, sigma54 specific, transcriptional regulator, Fis family Length = 462 Score = 394 bits (1013), Expect = e-108, Method: Compositional matrix adjust. Identities = 193/250 (77%), Positives = 215/250 (86%) Query: 12 PEQLLESELFGHVKGAFTGAVEHRKGLFQAADGGTLFLDEIGDMPLPLQVKLLRVLQERT 71 PE LLESELFGHVKGAFT AV + KGLFQAADGGTL LDEIGDMP LQVKLLRVLQE Sbjct: 207 PEALLESELFGHVKGAFTDAVSNHKGLFQAADGGTLLLDEIGDMPPALQVKLLRVLQEHE 266 Query: 72 VRPVGANDSTPVDVRILSATHRNLDAAMADGSFREDLYYRLNVVTLSLPLLVERREDIAL 131 VRPVGA+ S VDVRI+SATHR+LDAAMA G FR DLYYRLNVVTL+LP L ERREDIAL Sbjct: 267 VRPVGASQSIAVDVRIISATHRDLDAAMAAGDFRADLYYRLNVVTLTLPPLSERREDIAL 326 Query: 132 LANHFLQAIAERYQKKLNGFAPDALEILMMASWPGNVRQLYNVVEQVCALSTAPLIPAAL 191 LANHFL +A +Y K+L+ FAP+AL+ L A+WPGNVRQLYNVVEQVCALST PL+P AL Sbjct: 327 LANHFLVTLAAKYDKRLSSFAPEALKALTTAAWPGNVRQLYNVVEQVCALSTTPLVPLAL 386 Query: 192 VQRALRVPALEVLRYADAKQRFERDYLIQLLKLTDGNVADAARLADRNRTEFYRLLQKNG 251 VQRALR P+++VL +A+AKQRFERDYL+ LLKLTDGNVADAARLADRNRTEFYRL+QK+G Sbjct: 387 VQRALRSPSIQVLTFAEAKQRFERDYLVGLLKLTDGNVADAARLADRNRTEFYRLMQKHG 446 Query: 252 LDPRLFRGDE 261 L P F+ D Sbjct: 447 LTPGHFKADS 456 >C5T390.1 C5T390_ACIDE Putative two component, sigma54 specific, transcriptional regulator, Fis family Length = 470 Score = 388 bits (996), Expect = e-106, Method: Compositional matrix adjust. Identities = 189/262 (72%), Positives = 221/262 (84%), Gaps = 3/262 (1%) Query: 12 PEQLLESELFGHVKGAFTGAVEHRKGLFQAADGGTLFLDEIGDMPLPLQVKLLRVLQERT 71 PE LLESELFGH+KGAFT AV + KGLFQAA+GGTL LDEIGDMP LQVKLLRVLQER+ Sbjct: 209 PEALLESELFGHMKGAFTDAVSNHKGLFQAAEGGTLLLDEIGDMPPALQVKLLRVLQERS 268 Query: 72 VRPVGANDSTPVDVRILSATHRNLDAAMADGSFREDLYYRLNVVTLSLPLLVERREDIAL 131 VRPVGA+ STP+DVRI+SATHR+L+AAMA FREDLYYRLNVVTL+LP L +RREDIAL Sbjct: 269 VRPVGASQSTPIDVRIISATHRDLEAAMAAAQFREDLYYRLNVVTLTLPALADRREDIAL 328 Query: 132 LANHFLQAIAERYQKKLNGFAPDALEILMMASWPGNVRQLYNVVEQVCALSTAPLIPAAL 191 LANHFL +A +Y K+++GFAP+AL+ L A+WPGNVRQL+NVVEQVCALST PL+P L Sbjct: 329 LANHFLDKLARKYDKRVSGFAPEALKALTTAAWPGNVRQLFNVVEQVCALSTTPLVPLTL 388 Query: 192 VQRALRVPALEVLRYADAKQRFERDYLIQLLKLTDGNVADAARLADRNRTEFYRLLQKNG 251 VQRALR P+ +VL ++A+QRFER YL+ LLK+TDGNVADAARLA RNRTEFYRLLQK+ Sbjct: 389 VQRALRTPSTQVLSLSEARQRFERAYLVDLLKMTDGNVADAARLAQRNRTEFYRLLQKHA 448 Query: 252 LDPRLFRGDE---EDVAIERQE 270 L P F+ D +DVA ER + Sbjct: 449 LTPGHFKSDTADIDDVAPERHD 470