BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0064.p (421 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IXH6.1 D8IXH6_HERSS ATP-dependent Clp protease ATP-binding sub... 814 0.0 A4G5X0.1 CLPX_HERAR ATP-dependent Clp protease ATP-binding subun... 795 0.0 A6SY75.1 CLPX_JANMA ATP-dependent Clp protease ATP-binding subun... 789 0.0 F1W0G4.1 F1W0G4_9BURK ATP-dependent Clp protease ATP-binding sub... 783 0.0 D8NIT8.1 D8NIT8_RALSO ATP-dependent Clp protease ATP-binding sub... 714 0.0 >D8IXH6.1 D8IXH6_HERSS ATP-dependent Clp protease ATP-binding subunit ClpX Length = 421 Score = 814 bits (2103), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/421 (94%), Positives = 414/421 (98%) Query: 1 MSEKKSSSGEKLLYCSFCGKSQHEVKKLIAGPSVFICDECIDLCNDIIRDEASSVESVAG 60 MSEKKSSSGEKLLYCSFCGKSQHEVKKLIAGPSVFICDECIDLCNDIIRDEA+SVE+VAG Sbjct: 1 MSEKKSSSGEKLLYCSFCGKSQHEVKKLIAGPSVFICDECIDLCNDIIRDEAASVENVAG 60 Query: 61 AKSDLPTPQEISELLDQYVIGQQTAKRILSVAVYNHYKRLKHLGKKDDVELAKSNILLVG 120 AKSDLPTPQEI+ELLDQYVIGQ TAKRILSVAVYNHYKRLKHLGKKDDVELAKSNILLVG Sbjct: 61 AKSDLPTPQEITELLDQYVIGQATAKRILSVAVYNHYKRLKHLGKKDDVELAKSNILLVG 120 Query: 121 PTGSGKTLLAQTLARMLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQRG 180 PTGSGKTLLAQTLARMLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQ+G Sbjct: 121 PTGSGKTLLAQTLARMLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQKG 180 Query: 181 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFVQID 240 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFVQID Sbjct: 181 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFVQID 240 Query: 241 TTNIMFICGGAFDGLTKIISERSEKSGIGFGANVKSQTQKTASEVLLHAEPDDLVKFGLI 300 TTNIMFICGGAFDGL +IIS+RSEKSGIGF A+VKSQTQK+ SEVLL+AEP+DLVKFGLI Sbjct: 241 TTNIMFICGGAFDGLARIISDRSEKSGIGFSASVKSQTQKSNSEVLLNAEPEDLVKFGLI 300 Query: 301 PELVGRLPVIAALNELNEEALIQILLEPKNALIKQYSKLLQMEGAELEIRPAALQAIAKK 360 PELVGRLPVIA LNEL+E+ALIQIL+EPKNALIKQY+KLLQMEGAELEIRPAA+ AIAKK Sbjct: 301 PELVGRLPVIATLNELDEDALIQILIEPKNALIKQYAKLLQMEGAELEIRPAAMHAIAKK 360 Query: 361 ALARKTGARGLRSILEHALLDVMYELPSQQNVAKVVIDENTITNGAKPLLIYHEQPKVSG 420 ALARKTGARGLRSILEHALLDVMYELPS+QNVAKVV+DENTITNGAKPLLIYH+QPKVSG Sbjct: 361 ALARKTGARGLRSILEHALLDVMYELPSEQNVAKVVVDENTITNGAKPLLIYHDQPKVSG 420 Query: 421 A 421 Sbjct: 421 G 421 >A4G5X0.1 CLPX_HERAR ATP-dependent Clp protease ATP-binding subunit ClpX Length = 422 Score = 795 bits (2053), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/421 (91%), Positives = 407/421 (96%) Query: 1 MSEKKSSSGEKLLYCSFCGKSQHEVKKLIAGPSVFICDECIDLCNDIIRDEASSVESVAG 60 MSEKKSSSGEKLLYCSFCGKSQHEVKKLIAGPSVFICDECIDLCNDIIRDEASSVE++ G Sbjct: 1 MSEKKSSSGEKLLYCSFCGKSQHEVKKLIAGPSVFICDECIDLCNDIIRDEASSVETLTG 60 Query: 61 AKSDLPTPQEISELLDQYVIGQQTAKRILSVAVYNHYKRLKHLGKKDDVELAKSNILLVG 120 ++DLPTPQE+ ELLDQYVIGQ +AKRILSVAVYNHYKRLKHLGKKDDVELAKSNILLVG Sbjct: 61 PRTDLPTPQELCELLDQYVIGQNSAKRILSVAVYNHYKRLKHLGKKDDVELAKSNILLVG 120 Query: 121 PTGSGKTLLAQTLARMLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQRG 180 PTGSGKTLLAQTLAR L+VPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVE+AQ+G Sbjct: 121 PTGSGKTLLAQTLARTLDVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVERAQKG 180 Query: 181 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFVQID 240 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFVQID Sbjct: 181 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFVQID 240 Query: 241 TTNIMFICGGAFDGLTKIISERSEKSGIGFGANVKSQTQKTASEVLLHAEPDDLVKFGLI 300 TTNIMFICGGAFDGL KIISERSEKSGIGF A VKS+ +++AS+V+L EP+DL+KFGLI Sbjct: 241 TTNIMFICGGAFDGLAKIISERSEKSGIGFSATVKSREERSASQVMLDTEPEDLIKFGLI 300 Query: 301 PELVGRLPVIAALNELNEEALIQILLEPKNALIKQYSKLLQMEGAELEIRPAALQAIAKK 360 PELVGRLPV+A L EL+EEALIQILLEPKNALIKQYSKLLQMEGAELEIRPAALQAIAKK Sbjct: 301 PELVGRLPVVATLRELDEEALIQILLEPKNALIKQYSKLLQMEGAELEIRPAALQAIAKK 360 Query: 361 ALARKTGARGLRSILEHALLDVMYELPSQQNVAKVVIDENTITNGAKPLLIYHEQPKVSG 420 A+ARKTGARGLRSILEHALLDVMYELP++QNV+KVVIDE TITNGAKPLLIYHEQPKVSG Sbjct: 361 AIARKTGARGLRSILEHALLDVMYELPNEQNVSKVVIDEGTITNGAKPLLIYHEQPKVSG 420 Query: 421 A 421 A Sbjct: 421 A 421 >A6SY75.1 CLPX_JANMA ATP-dependent Clp protease ATP-binding subunit ClpX Length = 422 Score = 789 bits (2038), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/421 (90%), Positives = 406/421 (96%) Query: 1 MSEKKSSSGEKLLYCSFCGKSQHEVKKLIAGPSVFICDECIDLCNDIIRDEASSVESVAG 60 MSEKKSSSGEKLLYCSFCGKSQHEVKKLIAGPSVFICDECIDLCNDIIRDEASSVE+VAG Sbjct: 1 MSEKKSSSGEKLLYCSFCGKSQHEVKKLIAGPSVFICDECIDLCNDIIRDEASSVETVAG 60 Query: 61 AKSDLPTPQEISELLDQYVIGQQTAKRILSVAVYNHYKRLKHLGKKDDVELAKSNILLVG 120 ++DLPTPQE+ ELLDQYVIGQ AKRILSVAVYNHYKRLKHLGKKDDVELAKSNILLVG Sbjct: 61 PRTDLPTPQELCELLDQYVIGQNPAKRILSVAVYNHYKRLKHLGKKDDVELAKSNILLVG 120 Query: 121 PTGSGKTLLAQTLARMLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQRG 180 PTGSGKTLLAQTLAR L+VPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVE+AQ+G Sbjct: 121 PTGSGKTLLAQTLARTLDVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVERAQKG 180 Query: 181 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFVQID 240 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFVQID Sbjct: 181 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFVQID 240 Query: 241 TTNIMFICGGAFDGLTKIISERSEKSGIGFGANVKSQTQKTASEVLLHAEPDDLVKFGLI 300 TTNIMFICGGAFDGL KIISERSEKSGIGF A+VKS+ ++TAS+V++ EP+DL+KFGLI Sbjct: 241 TTNIMFICGGAFDGLAKIISERSEKSGIGFSASVKSREERTASQVMMDTEPEDLIKFGLI 300 Query: 301 PELVGRLPVIAALNELNEEALIQILLEPKNALIKQYSKLLQMEGAELEIRPAALQAIAKK 360 PELVGRLPV+A L EL+EEALIQILLEPKNALIKQYSKLLQMEGAELEIRPAALQAIAKK Sbjct: 301 PELVGRLPVVATLRELDEEALIQILLEPKNALIKQYSKLLQMEGAELEIRPAALQAIAKK 360 Query: 361 ALARKTGARGLRSILEHALLDVMYELPSQQNVAKVVIDENTITNGAKPLLIYHEQPKVSG 420 A+ARKTGARGLRSILEHALLDVM+ELP++QNVAKVVIDE TI +GAKPLLIYHEQ KVSG Sbjct: 361 AIARKTGARGLRSILEHALLDVMFELPNEQNVAKVVIDEGTINHGAKPLLIYHEQAKVSG 420 Query: 421 A 421 A Sbjct: 421 A 421 >F1W0G4.1 F1W0G4_9BURK ATP-dependent Clp protease ATP-binding subunit ClpX Length = 422 Score = 783 bits (2023), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/421 (88%), Positives = 408/421 (96%) Query: 1 MSEKKSSSGEKLLYCSFCGKSQHEVKKLIAGPSVFICDECIDLCNDIIRDEASSVESVAG 60 M++KKS++GEKLLYCSFCGKSQHEVKKLIAGPSVFICDECIDLCNDIIRDEAS+VE+VAG Sbjct: 1 MTDKKSTTGEKLLYCSFCGKSQHEVKKLIAGPSVFICDECIDLCNDIIRDEASTVETVAG 60 Query: 61 AKSDLPTPQEISELLDQYVIGQQTAKRILSVAVYNHYKRLKHLGKKDDVELAKSNILLVG 120 KS+LPTPQEI ELL QYVIGQ AKRILSVAVYNHYKRL+HLGKKDDVELAKSNILLVG Sbjct: 61 PKSELPTPQEICELLGQYVIGQDGAKRILSVAVYNHYKRLRHLGKKDDVELAKSNILLVG 120 Query: 121 PTGSGKTLLAQTLARMLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQRG 180 PTGSGKTLLAQTLARMLNVPFVIADATTLTEAGYVGEDVENIIQKLLQ CNY+VEKAQ+G Sbjct: 121 PTGSGKTLLAQTLARMLNVPFVIADATTLTEAGYVGEDVENIIQKLLQACNYDVEKAQKG 180 Query: 181 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFVQID 240 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFVQID Sbjct: 181 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFVQID 240 Query: 241 TTNIMFICGGAFDGLTKIISERSEKSGIGFGANVKSQTQKTASEVLLHAEPDDLVKFGLI 300 TTNIMFICGGAFDGL KI+S RSEKSGIGF A+VKSQ++++ASE+LL AEP+DL+KFGLI Sbjct: 241 TTNIMFICGGAFDGLAKIVSNRSEKSGIGFSASVKSQSERSASEMLLEAEPEDLIKFGLI 300 Query: 301 PELVGRLPVIAALNELNEEALIQILLEPKNALIKQYSKLLQMEGAELEIRPAALQAIAKK 360 PELVGRLPV+A L+EL E+A+IQILLEPKNALIKQY++LLQMEGAELE+RPAALQAIA+K Sbjct: 301 PELVGRLPVVATLSELTEDAMIQILLEPKNALIKQYARLLQMEGAELEVRPAALQAIARK 360 Query: 361 ALARKTGARGLRSILEHALLDVMYELPSQQNVAKVVIDENTITNGAKPLLIYHEQPKVSG 420 AL RKTGARGLRSILEHALLDVM+ELP+QQNV+KVVIDENTITNGAKPL+IYH+QPKV+G Sbjct: 361 ALQRKTGARGLRSILEHALLDVMFELPNQQNVSKVVIDENTITNGAKPLMIYHDQPKVAG 420 Query: 421 A 421 + Sbjct: 421 S 421 >D8NIT8.1 D8NIT8_RALSO ATP-dependent Clp protease ATP-binding subunit ClpX 3 Length = 424 Score = 714 bits (1844), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/423 (80%), Positives = 386/423 (91%), Gaps = 2/423 (0%) Query: 1 MSEKKSSSGEKLLYCSFCGKSQHEVKKLIAGPSVFICDECIDLCNDIIRDEASSVESVAG 60 M++KK S+GEKLLYCSFCGKSQHEVKKLIAGPSVFICDECIDLCN+IIRDEAS E G Sbjct: 1 MADKKGSTGEKLLYCSFCGKSQHEVKKLIAGPSVFICDECIDLCNEIIRDEASISEKEGG 60 Query: 61 --AKSDLPTPQEISELLDQYVIGQQTAKRILSVAVYNHYKRLKHLGKKDDVELAKSNILL 118 KSDLPTP EI + LDQYVIGQ+ AK+IL+VAVYNHYKRLKHLGKKDDVEL+KSNILL Sbjct: 61 LAVKSDLPTPHEIRQSLDQYVIGQEQAKKILAVAVYNHYKRLKHLGKKDDVELSKSNILL 120 Query: 119 VGPTGSGKTLLAQTLARMLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQ 178 +GPTGSGKTLLAQTLAR+LNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEV+KAQ Sbjct: 121 IGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVDKAQ 180 Query: 179 RGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFVQ 238 RGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDF+Q Sbjct: 181 RGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFLQ 240 Query: 239 IDTTNIMFICGGAFDGLTKIISERSEKSGIGFGANVKSQTQKTASEVLLHAEPDDLVKFG 298 +DTTNI+FICGGAFDGL KII +RS+KSGIGFGA VKS+ ++ +EVL EP+DL+KFG Sbjct: 241 VDTTNILFICGGAFDGLEKIIMQRSDKSGIGFGAEVKSREERDVNEVLPQVEPEDLIKFG 300 Query: 299 LIPELVGRLPVIAALNELNEEALIQILLEPKNALIKQYSKLLQMEGAELEIRPAALQAIA 358 LIPEL+GRLPV+A L +L+E AL++IL+EPKNA++KQY KLL MEG ELEIRP+AL AIA Sbjct: 301 LIPELIGRLPVVATLAKLDEAALMEILVEPKNAIVKQYQKLLAMEGVELEIRPSALTAIA 360 Query: 359 KKALARKTGARGLRSILEHALLDVMYELPSQQNVAKVVIDENTITNGAKPLLIYHEQPKV 418 +KA+ RKTGARGLRSI+EHAL+DVMY+LP+ + V KVVIDE+TIT KPLL+Y EQPKV Sbjct: 361 RKAIKRKTGARGLRSIVEHALMDVMYDLPNHKGVQKVVIDESTITGDGKPLLMYEEQPKV 420 Query: 419 SGA 421 +G+ Sbjct: 421 AGS 423