BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0043.p         (157 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IS41.1 D8IS41_HERSS Nitrogen regulatory IIA (Enzyme IIA-NTR) (...   287   3e-76
A6T2R1.1 A6T2R1_JANMA PTS system, nitrogen regulatory IIA component   259   1e-67
F1W0X6.1 F1W0X6_9BURK PTS system nitrogen-specific IIA component...   258   2e-67
A4G910.1 A4G910_HERAR Putative PTS IIA-like nitrogen-regulatory ...   256   6e-67
E5ALV3.1 E5ALV3_BURRH Nitrogen regulatory IIA protein (EC 2.7.1....   220   5e-56

>D8IS41.1 D8IS41_HERSS Nitrogen regulatory IIA (Enzyme IIA-NTR)
           (Phosphotransferase enzyme II, A component)
           transcription regulator protein EC=2.7.1.69
          Length = 157

 Score =  287 bits (735), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 139/155 (89%), Positives = 149/155 (96%)

Query: 1   MTNLAKILSPENVILDLEVSSKKRAFEQAGLTFENNSGIARSTVSENLFARERLGSTGLG 60
           MTNLAKILSPENV+LDLEVSSKKRAFEQAGLTFENNSGIARSTVSENLFARERLGSTGLG
Sbjct: 1   MTNLAKILSPENVVLDLEVSSKKRAFEQAGLTFENNSGIARSTVSENLFARERLGSTGLG 60

Query: 61  HGVAVPHGRIKGLKAPLALFMRLAEPIPFESPDGEPVKLLIFLLIPDNVTQQHLEILSEI 120
           HGVAVPHGRIKGLKAPLALFMRLA PIPFESPDG+PVKLL+FLLIPD+VTQQHLEILSEI
Sbjct: 61  HGVAVPHGRIKGLKAPLALFMRLAAPIPFESPDGQPVKLLVFLLIPDHVTQQHLEILSEI 120

Query: 121 AEMFSDNAFRNELISDPDQASVYSRLVTWQPSLEK 155
           AEMFSD+AFRNEL  +PD A V++R+VTWQ S+EK
Sbjct: 121 AEMFSDDAFRNELTHEPDPAVVHARIVTWQTSMEK 155


>A6T2R1.1 A6T2R1_JANMA PTS system, nitrogen regulatory IIA component
          Length = 157

 Score =  259 bits (662), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 124/157 (78%), Positives = 140/157 (89%)

Query: 1   MTNLAKILSPENVILDLEVSSKKRAFEQAGLTFENNSGIARSTVSENLFARERLGSTGLG 60
           M +L++IL P NV+LDL+VSSKKR FEQ GL FENN GIARS VS+NLFARERLGSTGLG
Sbjct: 1   MNHLSQILPPANVVLDLDVSSKKRTFEQVGLIFENNCGIARSVVSDNLFARERLGSTGLG 60

Query: 61  HGVAVPHGRIKGLKAPLALFMRLAEPIPFESPDGEPVKLLIFLLIPDNVTQQHLEILSEI 120
           HGVAVPHGRIKGLKAPLA F+RLA+PIPFESPDG+PV LLIFLLIPD+VTQQHLEILSE+
Sbjct: 61  HGVAVPHGRIKGLKAPLAAFVRLAQPIPFESPDGQPVNLLIFLLIPDHVTQQHLEILSEL 120

Query: 121 AEMFSDNAFRNELISDPDQASVYSRLVTWQPSLEKTN 157
           AEMFSD AFRN L S  D A+V++RL+TWQPSL+ TN
Sbjct: 121 AEMFSDEAFRNLLASTEDPAAVHARLITWQPSLQSTN 157


>F1W0X6.1 F1W0X6_9BURK PTS system nitrogen-specific IIA component, PtsN
          Length = 157

 Score =  258 bits (660), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 125/154 (81%), Positives = 139/154 (90%)

Query: 1   MTNLAKILSPENVILDLEVSSKKRAFEQAGLTFENNSGIARSTVSENLFARERLGSTGLG 60
           MTNLAKIL+P+NV+L LEVSSKKRAFEQAGL FENN GIARS+VSENLFARERLGSTGLG
Sbjct: 1   MTNLAKILTPDNVVLGLEVSSKKRAFEQAGLIFENNCGIARSSVSENLFARERLGSTGLG 60

Query: 61  HGVAVPHGRIKGLKAPLALFMRLAEPIPFESPDGEPVKLLIFLLIPDNVTQQHLEILSEI 120
           HGVAVPHGRIKGLKAPLA F+RL+E IPFESPDG PV LL+FLLIPD+VTQQHLEILSEI
Sbjct: 61  HGVAVPHGRIKGLKAPLAAFVRLSEAIPFESPDGLPVSLLVFLLIPDHVTQQHLEILSEI 120

Query: 121 AEMFSDNAFRNELISDPDQASVYSRLVTWQPSLE 154
           AEMFSD+ FR+ L +DPD  SV++RL+ WQ SL 
Sbjct: 121 AEMFSDDVFRSMLATDPDPISVHTRLIAWQGSLH 154


>A4G910.1 A4G910_HERAR Putative PTS IIA-like nitrogen-regulatory protein PtsN
          Length = 157

 Score =  256 bits (655), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 122/157 (77%), Positives = 139/157 (88%)

Query: 1   MTNLAKILSPENVILDLEVSSKKRAFEQAGLTFENNSGIARSTVSENLFARERLGSTGLG 60
           M +L++IL P NV+LDL+VSSKKR FEQ GL FENN GIARS VSENLFARERLGSTGLG
Sbjct: 1   MNHLSQILPPANVVLDLDVSSKKRTFEQVGLIFENNCGIARSVVSENLFARERLGSTGLG 60

Query: 61  HGVAVPHGRIKGLKAPLALFMRLAEPIPFESPDGEPVKLLIFLLIPDNVTQQHLEILSEI 120
           HGVAVPHGRIKGLKAPLA F+RLA+PIPFESPDG+PV LLIFLLIPDNVTQQHLEILSE+
Sbjct: 61  HGVAVPHGRIKGLKAPLAAFVRLAQPIPFESPDGQPVSLLIFLLIPDNVTQQHLEILSEL 120

Query: 121 AEMFSDNAFRNELISDPDQASVYSRLVTWQPSLEKTN 157
           AEMFSD AFR  L +  D A+V++RL+TWQPSL+ ++
Sbjct: 121 AEMFSDEAFRTLLSTTEDAAAVHARLITWQPSLQSSS 157


>E5ALV3.1 E5ALV3_BURRH Nitrogen regulatory IIA protein (EC 2.7.1.69)
           EC=2.7.1.69
          Length = 151

 Score =  220 bits (561), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 105/151 (69%), Positives = 124/151 (82%)

Query: 1   MTNLAKILSPENVILDLEVSSKKRAFEQAGLTFENNSGIARSTVSENLFARERLGSTGLG 60
           M  LAKIL  ENV+L L V+SKKR FEQAGL FEN +GIARS V++NLFARERLGSTGLG
Sbjct: 1   MNRLAKILPIENVVLGLSVTSKKRVFEQAGLIFENQNGIARSVVTDNLFARERLGSTGLG 60

Query: 61  HGVAVPHGRIKGLKAPLALFMRLAEPIPFESPDGEPVKLLIFLLIPDNVTQQHLEILSEI 120
            GVA+PHGRIKGLK PLA F+RLAEPIPFESPDG+PV+LLIFLL+P+  TQQHLEILSEI
Sbjct: 61  EGVAIPHGRIKGLKQPLAAFVRLAEPIPFESPDGQPVQLLIFLLVPEQATQQHLEILSEI 120

Query: 121 AEMFSDNAFRNELISDPDQASVYSRLVTWQP 151
           A++ SD   R  L ++PD+ +++  L  WQP
Sbjct: 121 AQLLSDRHARESLSTEPDRDALHQLLTQWQP 151