BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0039.p         (160 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IS45.1 D8IS45_HERSS Formamidopyrimidine-DNA glycosylase EC=3.2...   290   4e-77
A6T2R7.1 FPG_JANMA Formamidopyrimidine-DNA glycosylase EC=3.2.2....   246   9e-64
A4G916.1 FPG_HERAR Formamidopyrimidine-DNA glycosylase EC=3.2.2....   240   6e-62
F1VW37.1 F1VW37_9BURK Formamidopyrimidine-DNA glycosylase             238   2e-61
F2LD10.1 F2LD10_BURGA Formamidopyrimidine-DNA glycosylase             224   2e-57

>D8IS45.1 D8IS45_HERSS Formamidopyrimidine-DNA glycosylase EC=3.2.2.23
          Length = 273

 Score =  290 bits (742), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 139/160 (86%), Positives = 149/160 (93%)

Query: 1   VLWHDNADGDIEEHTLLRGLGLEPLEDKFSARELHRQTRNRSAPIKQVLLAGDIVVGVGN 60
           +LWHD ADG +EEH LLR LGLEPLE+KF+AREL RQTR RSAPIKQVLLAGDIVVGVGN
Sbjct: 114 ILWHDLADGAVEEHLLLRSLGLEPLEEKFTARELFRQTRGRSAPIKQVLLAGDIVVGVGN 173

Query: 61  IYASESLFKAGINPKTAAGKISLPRYEKLVTAIRETLAAAIEQGGSSLRDFIAVNGQSGY 120
           IYASESLFKA I+PKTAAGKISLPRYE+L  AIRETLAAAIEQGGSSLRDFIAVNGQSGY
Sbjct: 174 IYASESLFKARIHPKTAAGKISLPRYERLAQAIRETLAAAIEQGGSSLRDFIAVNGQSGY 233

Query: 121 FQQSYFVYSRTGQACRICTTPIRQIKQGQRSTFYCVVCQR 160
           FQQ+YFVY+RTG+ACRIC TPIRQIKQGQRSTFYCV CQ+
Sbjct: 234 FQQNYFVYNRTGEACRICATPIRQIKQGQRSTFYCVSCQK 273


>A6T2R7.1 FPG_JANMA Formamidopyrimidine-DNA glycosylase EC=3.2.2.23
           EC=4.2.99.18
          Length = 273

 Score =  246 bits (627), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 119/160 (74%), Positives = 134/160 (83%)

Query: 1   VLWHDNADGDIEEHTLLRGLGLEPLEDKFSARELHRQTRNRSAPIKQVLLAGDIVVGVGN 60
           VLWH   DG IE H LLR LG+EPLE  FSA+ L++QTRNRS+ IKQVLLAGDIVVGVGN
Sbjct: 114 VLWHAAEDGSIENHLLLRTLGVEPLEAAFSAQWLYQQTRNRSSAIKQVLLAGDIVVGVGN 173

Query: 61  IYASESLFKAGINPKTAAGKISLPRYEKLVTAIRETLAAAIEQGGSSLRDFIAVNGQSGY 120
           IYASESLF+A INPKT A +I L RYE+L  AIR+ LAAAIEQGGS+L+DFI VNGQSGY
Sbjct: 174 IYASESLFQARINPKTPAHRIGLARYERLAEAIRQILAAAIEQGGSTLKDFIGVNGQSGY 233

Query: 121 FQQSYFVYSRTGQACRICTTPIRQIKQGQRSTFYCVVCQR 160
           FQQ+YF Y+RTG+ CRIC TPIRQI QGQRSTFYC  CQ+
Sbjct: 234 FQQNYFCYARTGEPCRICKTPIRQIVQGQRSTFYCPNCQK 273


>A4G916.1 FPG_HERAR Formamidopyrimidine-DNA glycosylase EC=3.2.2.23
           EC=4.2.99.18
          Length = 273

 Score =  240 bits (612), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 114/160 (71%), Positives = 134/160 (83%)

Query: 1   VLWHDNADGDIEEHTLLRGLGLEPLEDKFSARELHRQTRNRSAPIKQVLLAGDIVVGVGN 60
           VLWH   +G +++H LLR LG+EPLE  F+A+ L+RQTR+R + IKQVLLAGDIVVGVGN
Sbjct: 114 VLWHAAEEGAVDQHLLLRTLGVEPLEGLFTAQWLYRQTRSRRSAIKQVLLAGDIVVGVGN 173

Query: 61  IYASESLFKAGINPKTAAGKISLPRYEKLVTAIRETLAAAIEQGGSSLRDFIAVNGQSGY 120
           IYASESLF+AGINPKT A +I L RYE+L  AIRE LAAAI QGGS+L+DFI VNGQSGY
Sbjct: 174 IYASESLFQAGINPKTQAHRIGLQRYERLAQAIREILAAAIAQGGSTLKDFIGVNGQSGY 233

Query: 121 FQQSYFVYSRTGQACRICTTPIRQIKQGQRSTFYCVVCQR 160
           FQQ+YFVY+RTG+ CRIC  P+RQI QGQRSTFYC  CQ+
Sbjct: 234 FQQNYFVYARTGEPCRICNAPVRQIVQGQRSTFYCPNCQK 273


>F1VW37.1 F1VW37_9BURK Formamidopyrimidine-DNA glycosylase
          Length = 316

 Score =  238 bits (608), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 112/160 (70%), Positives = 130/160 (81%)

Query: 1   VLWHDNADGDIEEHTLLRGLGLEPLEDKFSARELHRQTRNRSAPIKQVLLAGDIVVGVGN 60
           VLWH   DG +E H LLRGLG+EPL     A+ L  QTR RSA IKQVLLAGD+VVGVGN
Sbjct: 157 VLWHAQEDGPLEHHVLLRGLGIEPLGATLLAQTLFHQTRGRSAAIKQVLLAGDVVVGVGN 216

Query: 61  IYASESLFKAGINPKTAAGKISLPRYEKLVTAIRETLAAAIEQGGSSLRDFIAVNGQSGY 120
           IYASESLF+A INPKT AG+I+L RYE+L + I++TL+AAI QGGS+LRDF+  NGQSGY
Sbjct: 217 IYASESLFRARINPKTPAGRIALARYERLASEIQDTLSAAIAQGGSTLRDFVGANGQSGY 276

Query: 121 FQQSYFVYSRTGQACRICTTPIRQIKQGQRSTFYCVVCQR 160
           FQQSYFVY RTG+ CR+C   +RQIKQGQRSTFYCV CQ+
Sbjct: 277 FQQSYFVYDRTGEPCRVCGLAVRQIKQGQRSTFYCVHCQK 316


>F2LD10.1 F2LD10_BURGA Formamidopyrimidine-DNA glycosylase
          Length = 275

 Score =  224 bits (572), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 105/160 (65%), Positives = 124/160 (77%)

Query: 1   VLWHDNADGDIEEHTLLRGLGLEPLEDKFSARELHRQTRNRSAPIKQVLLAGDIVVGVGN 60
           VLWH    GDI EH LL  LG+EP    F+A  L+R+TR R+  +KQ LLAGDIVVGVGN
Sbjct: 116 VLWHPREQGDIHEHHLLTSLGVEPFSPAFTAALLYRRTRGRTVSVKQALLAGDIVVGVGN 175

Query: 61  IYASESLFKAGINPKTAAGKISLPRYEKLVTAIRETLAAAIEQGGSSLRDFIAVNGQSGY 120
           IYASESLF+AGI P TAAG++SLPRYE+L  A+R TLA AIE+GGS+LRDF+  NG+SGY
Sbjct: 176 IYASESLFRAGIRPTTAAGRVSLPRYERLAEAVRATLADAIERGGSTLRDFVGSNGESGY 235

Query: 121 FQQSYFVYSRTGQACRICTTPIRQIKQGQRSTFYCVVCQR 160
           FQ   FVY R G+ CR+C TPIRQI QGQRST++C  CQR
Sbjct: 236 FQLDCFVYDRAGEPCRVCGTPIRQIVQGQRSTYFCPNCQR 275