BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0094.p         (243 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IR47.1 D8IR47_HERSS DNA gyrase subunit A protein EC=5.99.1.3        480   e-134
A6T1G8.1 A6T1G8_JANMA DNA gyrase subunit A EC=5.99.1.3                472   e-131
A4G866.1 A4G866_HERAR DNA gyrase subunit A EC=5.99.1.3                469   e-130
F1VTY9.1 F1VTY9_9BURK DNA gyrase subunit A                            468   e-130
C3XD38.1 C3XD38_OXAFO DNA gyrase subunit A                            452   e-125

>D8IR47.1 D8IR47_HERSS DNA gyrase subunit A protein EC=5.99.1.3
          Length = 881

 Score =  480 bits (1236), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 226/239 (94%), Positives = 232/239 (97%)

Query: 1   MDQFAKETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWN 60
           MDQFAKETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVL+AMHEMNNVWN
Sbjct: 1   MDQFAKETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHEMNNVWN 60

Query: 61  RPFVKCARVVGEVMGKYHPHGDASIYDTLVRMAQDFSLRYMLVDGQGNFGSIDGDGAAAM 120
           RPFVKCARVVGEVMGKYHPHGDASIYDTLVRMAQDFSLRY LVDGQGNFGSIDGDGAAAM
Sbjct: 61  RPFVKCARVVGEVMGKYHPHGDASIYDTLVRMAQDFSLRYTLVDGQGNFGSIDGDGAAAM 120

Query: 121 RYTECRLDKIANELLADIEKETVDFDPNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMAT 180
           RYTECRLDKI+NELLADIEKETVDF PNYDGKEKEPSVLPTRIPNLL+NGSSGIAVGMAT
Sbjct: 121 RYTECRLDKISNELLADIEKETVDFVPNYDGKEKEPSVLPTRIPNLLVNGSSGIAVGMAT 180

Query: 181 NIPPHNITEVINGALHVLSNADCTIDELIELIPAPDFPTGGIIYGVSGVRDGYRIGDAR 239
           NIPPHNITEVINGALH+L+N  CTIDELIEL+PAPDFPTGGIIYGVSGVRDGYR G  R
Sbjct: 181 NIPPHNITEVINGALHLLANEQCTIDELIELVPAPDFPTGGIIYGVSGVRDGYRTGRGR 239


>A6T1G8.1 A6T1G8_JANMA DNA gyrase subunit A EC=5.99.1.3
          Length = 873

 Score =  472 bits (1214), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 224/239 (93%), Positives = 229/239 (95%)

Query: 1   MDQFAKETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWN 60
           MDQFAKETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWN
Sbjct: 1   MDQFAKETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWN 60

Query: 61  RPFVKCARVVGEVMGKYHPHGDASIYDTLVRMAQDFSLRYMLVDGQGNFGSIDGDGAAAM 120
           RPFVKCARVVGE MGKYHPHGDASIYDTLVRMAQ FSLRYMLVDGQGNFGSIDGD AAAM
Sbjct: 61  RPFVKCARVVGETMGKYHPHGDASIYDTLVRMAQPFSLRYMLVDGQGNFGSIDGDNAAAM 120

Query: 121 RYTECRLDKIANELLADIEKETVDFDPNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMAT 180
           RYTECRLDKIA ELLAD++KETVDF PNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMAT
Sbjct: 121 RYTECRLDKIAGELLADLDKETVDFVPNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMAT 180

Query: 181 NIPPHNITEVINGALHVLSNADCTIDELIELIPAPDFPTGGIIYGVSGVRDGYRIGDAR 239
           NIPPHNITEVI+GALHVL NAD T+DELIE+IPAPDFPTGGIIYGVSGVRDGYR G  R
Sbjct: 181 NIPPHNITEVIDGALHVLRNADATVDELIEIIPAPDFPTGGIIYGVSGVRDGYRTGRGR 239


>A4G866.1 A4G866_HERAR DNA gyrase subunit A EC=5.99.1.3
          Length = 871

 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 223/239 (93%), Positives = 229/239 (95%)

Query: 1   MDQFAKETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWN 60
           MDQFAKETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWN
Sbjct: 1   MDQFAKETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWN 60

Query: 61  RPFVKCARVVGEVMGKYHPHGDASIYDTLVRMAQDFSLRYMLVDGQGNFGSIDGDGAAAM 120
           RPFVKCARVVGE MGKYHPHGDASIYDTLVRMAQ FSLRYMLVDGQGNFGSIDGD AAAM
Sbjct: 61  RPFVKCARVVGETMGKYHPHGDASIYDTLVRMAQPFSLRYMLVDGQGNFGSIDGDNAAAM 120

Query: 121 RYTECRLDKIANELLADIEKETVDFDPNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMAT 180
           RYTECRLDKIA ELLAD++KETVDF PNYDGKE+EPSVLPTRIPNLLINGSSGIAVGMAT
Sbjct: 121 RYTECRLDKIAGELLADLDKETVDFVPNYDGKEREPSVLPTRIPNLLINGSSGIAVGMAT 180

Query: 181 NIPPHNITEVINGALHVLSNADCTIDELIELIPAPDFPTGGIIYGVSGVRDGYRIGDAR 239
           NIPPHNITEVI+GALHVL NA+ TIDELIE+IPAPDFPTGGIIYGVSGVRDGYR G  R
Sbjct: 181 NIPPHNITEVIDGALHVLRNAEATIDELIEIIPAPDFPTGGIIYGVSGVRDGYRTGRGR 239


>F1VTY9.1 F1VTY9_9BURK DNA gyrase subunit A
          Length = 884

 Score =  468 bits (1204), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 220/239 (92%), Positives = 230/239 (96%)

Query: 1   MDQFAKETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWN 60
           MDQFAKETIPISLE+EMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWN
Sbjct: 1   MDQFAKETIPISLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWN 60

Query: 61  RPFVKCARVVGEVMGKYHPHGDASIYDTLVRMAQDFSLRYMLVDGQGNFGSIDGDGAAAM 120
           RP+VKCARVVGEVMGKYHPHGD SIYDTLVRMAQDFSLRY LVDGQGNFGS+DGD AAAM
Sbjct: 61  RPYVKCARVVGEVMGKYHPHGDQSIYDTLVRMAQDFSLRYTLVDGQGNFGSVDGDNAAAM 120

Query: 121 RYTECRLDKIANELLADIEKETVDFDPNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMAT 180
           RYTECRLDKIANE+LADI+K+TVDF PNYDGKEKEP+VLPTRIPNLLING+SGIAVGMAT
Sbjct: 121 RYTECRLDKIANEILADIDKDTVDFVPNYDGKEKEPTVLPTRIPNLLINGASGIAVGMAT 180

Query: 181 NIPPHNITEVINGALHVLSNADCTIDELIELIPAPDFPTGGIIYGVSGVRDGYRIGDAR 239
           NIPPHNITEVI+GALHVL NADCTIDELIE+IPAPDFPT GIIYGVSGVRDGYR G  R
Sbjct: 181 NIPPHNITEVIDGALHVLRNADCTIDELIEIIPAPDFPTAGIIYGVSGVRDGYRTGRGR 239


>C3XD38.1 C3XD38_OXAFO DNA gyrase subunit A
          Length = 877

 Score =  452 bits (1164), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 211/239 (88%), Positives = 223/239 (93%)

Query: 1   MDQFAKETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWN 60
           MDQFAKETI ISLE+EMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLF MHEMNN WN
Sbjct: 1   MDQFAKETISISLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFGMHEMNNAWN 60

Query: 61  RPFVKCARVVGEVMGKYHPHGDASIYDTLVRMAQDFSLRYMLVDGQGNFGSIDGDGAAAM 120
           RP+VKCARVVGEVMGKYHPHGD SIYDTLVRMAQDFSLRY LVDGQGNFGSIDGD AAAM
Sbjct: 61  RPYVKCARVVGEVMGKYHPHGDQSIYDTLVRMAQDFSLRYTLVDGQGNFGSIDGDAAAAM 120

Query: 121 RYTECRLDKIANELLADIEKETVDFDPNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMAT 180
           RYTECRLD+I+ E+LADI+KET+DF PNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMAT
Sbjct: 121 RYTECRLDRISEEMLADIDKETIDFVPNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMAT 180

Query: 181 NIPPHNITEVINGALHVLSNADCTIDELIELIPAPDFPTGGIIYGVSGVRDGYRIGDAR 239
           NIPPHN+ EVINGAL +L   DCTIDELI++IPAPDFPTGGIIYGVSGVR+GYR G  R
Sbjct: 181 NIPPHNLVEVINGALQLLHQPDCTIDELIDIIPAPDFPTGGIIYGVSGVREGYRTGRGR 239