BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0086.p (579 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IR41.1 D8IR41_HERSS 30s ribosomal subunit S1 protein 1104 0.0 A2RPS8.1 A2RPS8_HERSE 30s ribosomal subunit protein S1 1104 0.0 A6T1G1.1 A6T1G1_JANMA Small subunit ribosomal protein S1 1103 0.0 A4G859.1 A4G859_HERAR 30S ribosomal subunit protein S1 1094 0.0 F1VZC1.1 F1VZC1_9BURK SSU ribosomal protein S1p 1079 0.0 >D8IR41.1 D8IR41_HERSS 30s ribosomal subunit S1 protein Length = 585 Score = 1104 bits (2855), Expect = 0.0, Method: Compositional matrix adjust. Identities = 545/575 (94%), Positives = 561/575 (97%) Query: 5 FLNSMSTTTVLAPGAAGADAFAALFEESLSRQDMRSGEVISAEVVRLDHNFVIVNAGLKS 64 L+ MSTTTV+A G + FAALFEESLSRQDMRSGEVISAEVVRLDHNFVIVNAGLKS Sbjct: 11 LLSFMSTTTVIAAGVDTSSEFAALFEESLSRQDMRSGEVISAEVVRLDHNFVIVNAGLKS 70 Query: 65 EAFIPIEEFKNDNGELEVNVGDFISVAIESLENGFGDTILSRDKAKRLASWLSLEKAMES 124 EAFIP+EEFKNDNGE+EVNVGDFISVAIESLENGFGDTILSRDKAKRLASWLSLEKAMES Sbjct: 71 EAFIPVEEFKNDNGEVEVNVGDFISVAIESLENGFGDTILSRDKAKRLASWLSLEKAMES 130 Query: 125 GEIVVGTVNGKVKGGLTVLTNGIRAFLPGSLVDTRPVKDTTPFEGKTLEFKVIKLDRKRN 184 GEIV GTVNGKVKGGLTVLTNGIRAFLPGSLVDTRPVKDTTPFEGKTLEFKVIKLDRKRN Sbjct: 131 GEIVTGTVNGKVKGGLTVLTNGIRAFLPGSLVDTRPVKDTTPFEGKTLEFKVIKLDRKRN 190 Query: 185 NVVLSRRAVIEASMGEERQKLMETLKEGTVVTGVVKNITDYGAFVDLGGIDGLLHITDLA 244 NVVLSRRAVIEASMGEER KLMETLKEGTVVTG+VKNITDYGAFVDLGGIDGLLHITDLA Sbjct: 191 NVVLSRRAVIEASMGEERAKLMETLKEGTVVTGIVKNITDYGAFVDLGGIDGLLHITDLA 250 Query: 245 WRRVRHPSEVLTVGQEITAKVLKYDQEKNRVSLGVKQLGDDPWTGLSRRYPQGTRLFGKV 304 WRRVRHPSEVL+VGQEITAKVLKYDQEKNRVSLGVKQLGDDPWTGLSRRYPQGTRLFGKV Sbjct: 251 WRRVRHPSEVLSVGQEITAKVLKYDQEKNRVSLGVKQLGDDPWTGLSRRYPQGTRLFGKV 310 Query: 305 TNLTDYGAFVEVEQGIEGLVHVSEMDWTNKNVAPNKVVQLGDEVEVMVLEIDEERRRISL 364 TNLTDYGAFVEVEQGIEGLVHVSEMDWTNKNVAPNKVVQLGDEVEVMVLEIDEERRRISL Sbjct: 311 TNLTDYGAFVEVEQGIEGLVHVSEMDWTNKNVAPNKVVQLGDEVEVMVLEIDEERRRISL 370 Query: 365 GMKQCKANPWDDFAITHKKGDKVKGAIKSITDFGVFIGLTGNIDGLVHLSDLSWTETGEE 424 GMKQCK NPWDDFA++HKKGDKVKG+IKSITDFGVFIGL GNIDGLVHLSDLSWTE GEE Sbjct: 371 GMKQCKPNPWDDFAMSHKKGDKVKGSIKSITDFGVFIGLPGNIDGLVHLSDLSWTEAGEE 430 Query: 425 AVRKFKKGDELEAVVLAIDVERERVSLGVKQLEGDPFNNFAAMNDKGALVNGTVKSVEPK 484 AVRKFKKGDELEAVVLAIDVERERVSLGVKQLEGDPFNNFAA+NDKGA+V GTVKSVEPK Sbjct: 431 AVRKFKKGDELEAVVLAIDVERERVSLGVKQLEGDPFNNFAALNDKGAIVTGTVKSVEPK 490 Query: 485 GAVIQLSEEVEGYLRASEISRDRVEDAGTHLKVGDSVEALVINIDRKARSIQLSIKAKDN 544 GAVIQL++EVEGYLRASEISRDRVEDAGTHLKVGDSVEALVINIDRKARSIQLSIKAKDN Sbjct: 491 GAVIQLTDEVEGYLRASEISRDRVEDAGTHLKVGDSVEALVINIDRKARSIQLSIKAKDN 550 Query: 545 AETQEAMQKMSSDSSAASGTTSLGALLKAKLDNKN 579 AETQEAMQKMS+DS+AASGTTSLGALLKAKLDNKN Sbjct: 551 AETQEAMQKMSADSNAASGTTSLGALLKAKLDNKN 585 >A2RPS8.1 A2RPS8_HERSE 30s ribosomal subunit protein S1 Length = 585 Score = 1104 bits (2855), Expect = 0.0, Method: Compositional matrix adjust. Identities = 545/575 (94%), Positives = 561/575 (97%) Query: 5 FLNSMSTTTVLAPGAAGADAFAALFEESLSRQDMRSGEVISAEVVRLDHNFVIVNAGLKS 64 L+ MSTTTV+A G + FAALFEESLSRQDMRSGEVISAEVVRLDHNFVIVNAGLKS Sbjct: 11 LLSFMSTTTVIAAGVDTSSEFAALFEESLSRQDMRSGEVISAEVVRLDHNFVIVNAGLKS 70 Query: 65 EAFIPIEEFKNDNGELEVNVGDFISVAIESLENGFGDTILSRDKAKRLASWLSLEKAMES 124 EAFIP+EEFKNDNGE+EVNVGDFISVAIESLENGFGDTILSRDKAKRLASWLSLEKAMES Sbjct: 71 EAFIPVEEFKNDNGEVEVNVGDFISVAIESLENGFGDTILSRDKAKRLASWLSLEKAMES 130 Query: 125 GEIVVGTVNGKVKGGLTVLTNGIRAFLPGSLVDTRPVKDTTPFEGKTLEFKVIKLDRKRN 184 GEIV GTVNGKVKGGLTVLTNGIRAFLPGSLVDTRPVKDTTPFEGKTLEFKVIKLDRKRN Sbjct: 131 GEIVTGTVNGKVKGGLTVLTNGIRAFLPGSLVDTRPVKDTTPFEGKTLEFKVIKLDRKRN 190 Query: 185 NVVLSRRAVIEASMGEERQKLMETLKEGTVVTGVVKNITDYGAFVDLGGIDGLLHITDLA 244 NVVLSRRAVIEASMGEER KLMETLKEGTVVTG+VKNITDYGAFVDLGGIDGLLHITDLA Sbjct: 191 NVVLSRRAVIEASMGEERAKLMETLKEGTVVTGIVKNITDYGAFVDLGGIDGLLHITDLA 250 Query: 245 WRRVRHPSEVLTVGQEITAKVLKYDQEKNRVSLGVKQLGDDPWTGLSRRYPQGTRLFGKV 304 WRRVRHPSEVL+VGQEITAKVLKYDQEKNRVSLGVKQLGDDPWTGLSRRYPQGTRLFGKV Sbjct: 251 WRRVRHPSEVLSVGQEITAKVLKYDQEKNRVSLGVKQLGDDPWTGLSRRYPQGTRLFGKV 310 Query: 305 TNLTDYGAFVEVEQGIEGLVHVSEMDWTNKNVAPNKVVQLGDEVEVMVLEIDEERRRISL 364 TNLTDYGAFVEVEQGIEGLVHVSEMDWTNKNVAPNKVVQLGDEVEVMVLEIDEERRRISL Sbjct: 311 TNLTDYGAFVEVEQGIEGLVHVSEMDWTNKNVAPNKVVQLGDEVEVMVLEIDEERRRISL 370 Query: 365 GMKQCKANPWDDFAITHKKGDKVKGAIKSITDFGVFIGLTGNIDGLVHLSDLSWTETGEE 424 GMKQCK NPWDDFA++HKKGDKVKG+IKSITDFGVFIGL GNIDGLVHLSDLSWTE GEE Sbjct: 371 GMKQCKPNPWDDFAMSHKKGDKVKGSIKSITDFGVFIGLPGNIDGLVHLSDLSWTEAGEE 430 Query: 425 AVRKFKKGDELEAVVLAIDVERERVSLGVKQLEGDPFNNFAAMNDKGALVNGTVKSVEPK 484 AVRKFKKGDELEAVVLAIDVERERVSLGVKQLEGDPFNNFAA+NDKGA+V GTVKSVEPK Sbjct: 431 AVRKFKKGDELEAVVLAIDVERERVSLGVKQLEGDPFNNFAALNDKGAIVTGTVKSVEPK 490 Query: 485 GAVIQLSEEVEGYLRASEISRDRVEDAGTHLKVGDSVEALVINIDRKARSIQLSIKAKDN 544 GAVIQL++EVEGYLRASEISRDRVEDAGTHLKVGDSVEALVINIDRKARSIQLSIKAKDN Sbjct: 491 GAVIQLTDEVEGYLRASEISRDRVEDAGTHLKVGDSVEALVINIDRKARSIQLSIKAKDN 550 Query: 545 AETQEAMQKMSSDSSAASGTTSLGALLKAKLDNKN 579 AETQEAMQKMS+DS+AASGTTSLGALLKAKLDNKN Sbjct: 551 AETQEAMQKMSADSNAASGTTSLGALLKAKLDNKN 585 >A6T1G1.1 A6T1G1_JANMA Small subunit ribosomal protein S1 Length = 571 Score = 1103 bits (2852), Expect = 0.0, Method: Compositional matrix adjust. Identities = 543/571 (95%), Positives = 557/571 (97%) Query: 9 MSTTTVLAPGAAGADAFAALFEESLSRQDMRSGEVISAEVVRLDHNFVIVNAGLKSEAFI 68 M+T G ++FAALFEESLSRQDMRSGEVISAEVVRLDHNFVIVNAGLKSEAFI Sbjct: 1 MTTVVTSEATPVGMESFAALFEESLSRQDMRSGEVISAEVVRLDHNFVIVNAGLKSEAFI 60 Query: 69 PIEEFKNDNGELEVNVGDFISVAIESLENGFGDTILSRDKAKRLASWLSLEKAMESGEIV 128 PIEEFKNDNGELEVNVGDFISVAIESLENGFGDTILSRDKAKRLASWLSLEKAMESGEIV Sbjct: 61 PIEEFKNDNGELEVNVGDFISVAIESLENGFGDTILSRDKAKRLASWLSLEKAMESGEIV 120 Query: 129 VGTVNGKVKGGLTVLTNGIRAFLPGSLVDTRPVKDTTPFEGKTLEFKVIKLDRKRNNVVL 188 VGTVNGKVKGGLTVLTNGIRAFLPGSLVDTRPVKDTTPFEGKTLEFKVIKLDRKRNNVVL Sbjct: 121 VGTVNGKVKGGLTVLTNGIRAFLPGSLVDTRPVKDTTPFEGKTLEFKVIKLDRKRNNVVL 180 Query: 189 SRRAVIEASMGEERQKLMETLKEGTVVTGVVKNITDYGAFVDLGGIDGLLHITDLAWRRV 248 SRRAVIEASMGEERQKLMETLKEGT+VTGVVKNITDYGAFVDLGGIDGLLHITDLAWRRV Sbjct: 181 SRRAVIEASMGEERQKLMETLKEGTIVTGVVKNITDYGAFVDLGGIDGLLHITDLAWRRV 240 Query: 249 RHPSEVLTVGQEITAKVLKYDQEKNRVSLGVKQLGDDPWTGLSRRYPQGTRLFGKVTNLT 308 RHPSEVLTVGQEITAKVLKYDQEKNRVSLGVKQLGDDPWTGLSRRYPQGTRLFGKVTNLT Sbjct: 241 RHPSEVLTVGQEITAKVLKYDQEKNRVSLGVKQLGDDPWTGLSRRYPQGTRLFGKVTNLT 300 Query: 309 DYGAFVEVEQGIEGLVHVSEMDWTNKNVAPNKVVQLGDEVEVMVLEIDEERRRISLGMKQ 368 DYG+FVEVEQGIEGLVHVSEMDWTNKNVAPNKVVQLGDEVEVMVLEIDEERRRISLGMKQ Sbjct: 301 DYGSFVEVEQGIEGLVHVSEMDWTNKNVAPNKVVQLGDEVEVMVLEIDEERRRISLGMKQ 360 Query: 369 CKANPWDDFAITHKKGDKVKGAIKSITDFGVFIGLTGNIDGLVHLSDLSWTETGEEAVRK 428 CKANPWDDFA+THKKGDKV+GAIKSITDFGVFIGL GNIDGLVHLSDLSWTETGEEAVR+ Sbjct: 361 CKANPWDDFAVTHKKGDKVRGAIKSITDFGVFIGLAGNIDGLVHLSDLSWTETGEEAVRR 420 Query: 429 FKKGDELEAVVLAIDVERERVSLGVKQLEGDPFNNFAAMNDKGALVNGTVKSVEPKGAVI 488 FKKGDELEA+VLAIDVERERVSLGVKQLEGDPFNNFAAMNDKGALV GTVKSVEPKGAVI Sbjct: 421 FKKGDELEAIVLAIDVERERVSLGVKQLEGDPFNNFAAMNDKGALVTGTVKSVEPKGAVI 480 Query: 489 QLSEEVEGYLRASEISRDRVEDAGTHLKVGDSVEALVINIDRKARSIQLSIKAKDNAETQ 548 QLS+EVEGYLRASEISRDRVEDAGTHLKVGD+VEA+VIN+DRKAR IQLSIKAKDN ETQ Sbjct: 481 QLSDEVEGYLRASEISRDRVEDAGTHLKVGDTVEAMVINVDRKARGIQLSIKAKDNVETQ 540 Query: 549 EAMQKMSSDSSAASGTTSLGALLKAKLDNKN 579 EAMQKMSSDS+AASGTTSLGALLKAKLDNKN Sbjct: 541 EAMQKMSSDSNAASGTTSLGALLKAKLDNKN 571 >A4G859.1 A4G859_HERAR 30S ribosomal subunit protein S1 Length = 559 Score = 1094 bits (2829), Expect = 0.0, Method: Compositional matrix adjust. Identities = 537/555 (96%), Positives = 551/555 (99%) Query: 23 DAFAALFEESLSRQDMRSGEVISAEVVRLDHNFVIVNAGLKSEAFIPIEEFKNDNGELEV 82 ++FAALFEESL+RQDMRSGEVISAEVVRLDHNFVIVNAGLKSEAFIPIEEFKNDNGELEV Sbjct: 2 ESFAALFEESLTRQDMRSGEVISAEVVRLDHNFVIVNAGLKSEAFIPIEEFKNDNGELEV 61 Query: 83 NVGDFISVAIESLENGFGDTILSRDKAKRLASWLSLEKAMESGEIVVGTVNGKVKGGLTV 142 NVGDFISVAIESLENGFGDTILSRDKAKRLASWLSLEKAMESGEIV+GTVNGKVKGGLTV Sbjct: 62 NVGDFISVAIESLENGFGDTILSRDKAKRLASWLSLEKAMESGEIVIGTVNGKVKGGLTV 121 Query: 143 LTNGIRAFLPGSLVDTRPVKDTTPFEGKTLEFKVIKLDRKRNNVVLSRRAVIEASMGEER 202 LTNGIRAFLPGSLVDTRPVKDTTPFEGKTLEFKVIKLDRKRNNVVLSRRAVIEASMGEER Sbjct: 122 LTNGIRAFLPGSLVDTRPVKDTTPFEGKTLEFKVIKLDRKRNNVVLSRRAVIEASMGEER 181 Query: 203 QKLMETLKEGTVVTGVVKNITDYGAFVDLGGIDGLLHITDLAWRRVRHPSEVLTVGQEIT 262 QKLMETLKEGTVVTG+VKNITDYGAFVDLGGIDGLLHITDLAWRRVRHPSEVLTVGQEIT Sbjct: 182 QKLMETLKEGTVVTGIVKNITDYGAFVDLGGIDGLLHITDLAWRRVRHPSEVLTVGQEIT 241 Query: 263 AKVLKYDQEKNRVSLGVKQLGDDPWTGLSRRYPQGTRLFGKVTNLTDYGAFVEVEQGIEG 322 AKVLKYDQEKNRVSLGVKQLGDDPWTGLSRRYPQGTRLFGKVTNLTDYG+FVEVEQGIEG Sbjct: 242 AKVLKYDQEKNRVSLGVKQLGDDPWTGLSRRYPQGTRLFGKVTNLTDYGSFVEVEQGIEG 301 Query: 323 LVHVSEMDWTNKNVAPNKVVQLGDEVEVMVLEIDEERRRISLGMKQCKANPWDDFAITHK 382 LVHVSEMDWTNKNVAPNKVVQLGDEVEVMVLEIDEERRRISLGMKQCKANPWDDFA+THK Sbjct: 302 LVHVSEMDWTNKNVAPNKVVQLGDEVEVMVLEIDEERRRISLGMKQCKANPWDDFAVTHK 361 Query: 383 KGDKVKGAIKSITDFGVFIGLTGNIDGLVHLSDLSWTETGEEAVRKFKKGDELEAVVLAI 442 KGDKV+GAIKSITDFGVFIGL GNIDGLVHLSDLSWTETGEEAVR+FKKGDELEA+VLAI Sbjct: 362 KGDKVRGAIKSITDFGVFIGLAGNIDGLVHLSDLSWTETGEEAVRRFKKGDELEAIVLAI 421 Query: 443 DVERERVSLGVKQLEGDPFNNFAAMNDKGALVNGTVKSVEPKGAVIQLSEEVEGYLRASE 502 DVERERVSLGVKQLEGDPFNNFAAMNDKGALV GTVKSVEPKGAVIQLSEEVEGYLRASE Sbjct: 422 DVERERVSLGVKQLEGDPFNNFAAMNDKGALVTGTVKSVEPKGAVIQLSEEVEGYLRASE 481 Query: 503 ISRDRVEDAGTHLKVGDSVEALVINIDRKARSIQLSIKAKDNAETQEAMQKMSSDSSAAS 562 ISRDRVEDAGTHLKVGD+VEA+VIN+DRKAR IQLSIKAKDN ETQEAMQKMSSDS+AAS Sbjct: 482 ISRDRVEDAGTHLKVGDTVEAMVINVDRKARGIQLSIKAKDNVETQEAMQKMSSDSNAAS 541 Query: 563 GTTSLGALLKAKLDN 577 GTTSLGALLKAKLDN Sbjct: 542 GTTSLGALLKAKLDN 556 >F1VZC1.1 F1VZC1_9BURK SSU ribosomal protein S1p Length = 560 Score = 1079 bits (2790), Expect = 0.0, Method: Compositional matrix adjust. Identities = 533/559 (95%), Positives = 547/559 (97%), Gaps = 2/559 (0%) Query: 23 DAFAALFEESLSRQDMRSGEVISAEVVRLDHNFVIVNAGLKSEAFIPIEEFKNDNGELEV 82 ++FAALFEESL RQDMRSGEVISAEVVRLDHNFVIVNAGLKSEAFIPIEEFKNDNGELEV Sbjct: 2 ESFAALFEESLLRQDMRSGEVISAEVVRLDHNFVIVNAGLKSEAFIPIEEFKNDNGELEV 61 Query: 83 NVGDFISVAIESLENGFGDTILSRDKAKRLASWLSLEKAMESGEIVVGTVNGKVKGGLTV 142 NVGDFISVAIESLENGFGDTILSRDKAKRLASWLSLEKAMESGEIV+GTVNGKVKGGLTV Sbjct: 62 NVGDFISVAIESLENGFGDTILSRDKAKRLASWLSLEKAMESGEIVIGTVNGKVKGGLTV 121 Query: 143 LTNGIRAFLPGSLVDTRPVKDTTPFEGKTLEFKVIKLDRKRNNVVLSRRAVIEASMGEER 202 LTNGIRAFLPGSLVDTRPVKDTTPFEGKTLEFKVIKLDRKRNNVVLSRRAVIEASMGEER Sbjct: 122 LTNGIRAFLPGSLVDTRPVKDTTPFEGKTLEFKVIKLDRKRNNVVLSRRAVIEASMGEER 181 Query: 203 QKLMETLKEGTVVTGVVKNITDYGAFVDLGGIDGLLHITDLAWRRVRHPSEVLTVGQEIT 262 QKLMETLKEGTVVTG+VKNITDYGAFVDLGGIDGLLHITDLAWRRVRHPSEVLTVGQEIT Sbjct: 182 QKLMETLKEGTVVTGIVKNITDYGAFVDLGGIDGLLHITDLAWRRVRHPSEVLTVGQEIT 241 Query: 263 AKVLKYDQEKNRVSLGVKQLGDDPWTGLSRRYPQGTRLFGKVTNLTDYGAFVEVEQGIEG 322 AKVLKYDQEKNRVSLGVKQLGDDPWTGLSRRYPQ TRLFGKVTNLTDYGAFVEVEQGIEG Sbjct: 242 AKVLKYDQEKNRVSLGVKQLGDDPWTGLSRRYPQSTRLFGKVTNLTDYGAFVEVEQGIEG 301 Query: 323 LVHVSEMDWTNKNVAPNKVVQLGDEVEVMVLEIDEERRRISLGMKQCKANPWDDFAITHK 382 LVHVSEMDWTNKNVAPNKVVQLGDEVEVMVLEIDEERRRISLGMKQCKANPWDDFA+THK Sbjct: 302 LVHVSEMDWTNKNVAPNKVVQLGDEVEVMVLEIDEERRRISLGMKQCKANPWDDFAVTHK 361 Query: 383 KGDKVKGAIKSITDFGVFIGLTGNIDGLVHLSDLSWTETGEEAVRKFKKGDELEAVVLAI 442 KGDKV+GAIKSITDFGVFIGL GNIDGLVHLSDLSWTETGEEAVR+FKKGDELEA+VLAI Sbjct: 362 KGDKVRGAIKSITDFGVFIGLAGNIDGLVHLSDLSWTETGEEAVRRFKKGDELEAIVLAI 421 Query: 443 DVERERVSLGVKQLEGDPFNNFAAMNDKGALVNGTVKSVEPKGAVIQLSEEVEGYLRASE 502 DVERERVSLGVKQLEGDPFNNFAAMNDKG+LV G VK VEPKGAVIQLSEEVEGYLRASE Sbjct: 422 DVERERVSLGVKQLEGDPFNNFAAMNDKGSLVTGVVKMVEPKGAVIQLSEEVEGYLRASE 481 Query: 503 ISRDRVEDAGTHLKVGDSVEALVINIDRKARSIQLSIKAKDNAETQEAMQKMS--SDSSA 560 ISRDRVEDAGTHLKVGD+VEA+V+NIDRKAR IQLSIKAKDN ETQE M+KMS SDS+A Sbjct: 482 ISRDRVEDAGTHLKVGDTVEAMVLNIDRKARGIQLSIKAKDNVETQEEMRKMSTASDSNA 541 Query: 561 ASGTTSLGALLKAKLDNKN 579 ASGTTSLGALLKAK DNKN Sbjct: 542 ASGTTSLGALLKAKFDNKN 560