BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0066.p (283 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IR26.1 D8IR26_HERSS ABC-type nitrate/sulfonate/bicarbonate tra... 521 e-146 Q21UU4.1 Q21UU4_RHOFD Binding-protein-dependent transport system... 445 e-123 Q12B93.1 Q12B93_POLSJ Binding-protein-dependent transport system... 432 e-119 C5CYK4.1 C5CYK4_VARPS Binding-protein-dependent transport system... 414 e-114 B2JG64.1 B2JG64_BURP8 Binding-protein-dependent transport system... 407 e-111 >D8IR26.1 D8IR26_HERSS ABC-type nitrate/sulfonate/bicarbonate transport system, permease component protein Length = 283 Score = 521 bits (1341), Expect = e-146, Method: Compositional matrix adjust. Identities = 260/283 (91%), Positives = 271/283 (95%) Query: 1 MWKLLKPSHKNLLFWQLLVLVVVLAVWHIATRNEQTAFFFGEPLKVAVRIWQWFTVGSGS 60 MWKL KP+HKN+ FWQL+VL +VL VWH+ATRN QTAFFFGEPLKVA RIW+WFTVGSGS Sbjct: 1 MWKLFKPNHKNIRFWQLMVLAIVLVVWHVATRNPQTAFFFGEPLKVAQRIWEWFTVGSGS 60 Query: 61 LEVGFGDTTFFTLNFPAEIYSHLLVTLTETVLAFGIGTVLGLGIGLWLALSPLASAILDP 120 LEVG GDTTFFTL+FPAEIYSHLL+TLTETVLAF IGTV GL IGLWLALSP ASAILDP Sbjct: 61 LEVGIGDTTFFTLSFPAEIYSHLLITLTETVLAFVIGTVFGLAIGLWLALSPTASAILDP 120 Query: 121 YVKAANSMPRVILAPIFAMWFGLGIWSKVALAVTLVFFIVFFNVYQGVKEVSPVVLANAR 180 YVKAANSMPRVILAPIFAMWFGLGIWSKVALAVTLVFFIVFFNVYQGVKEVSPVVLANAR Sbjct: 121 YVKAANSMPRVILAPIFAMWFGLGIWSKVALAVTLVFFIVFFNVYQGVKEVSPVVLANAR 180 Query: 181 MLGANARQLLRTVYLPSATSWVFSSLHTSIGLAFVGAVVGEYLGSARGVGYLILQAEGSF 240 MLGANARQLLRTVYLPSATSWVFSSLHTSIGLAFVGAVVGEYLGSARGVGYLILQAEG+F Sbjct: 181 MLGANARQLLRTVYLPSATSWVFSSLHTSIGLAFVGAVVGEYLGSARGVGYLILQAEGTF 240 Query: 241 DINTVFAGIVVLTAFALVLDVAVGVIEKRLMKWQPKSGETEKM 283 DINTVFAGIVVLT FALVLD+AVGVIEKRLMKWQPKSGETEK+ Sbjct: 241 DINTVFAGIVVLTIFALVLDLAVGVIEKRLMKWQPKSGETEKL 283 >Q21UU4.1 Q21UU4_RHOFD Binding-protein-dependent transport systems inner membrane component Length = 283 Score = 445 bits (1144), Expect = e-123, Method: Compositional matrix adjust. Identities = 229/283 (80%), Positives = 260/283 (91%) Query: 1 MWKLLKPSHKNLLFWQLLVLVVVLAVWHIATRNEQTAFFFGEPLKVAVRIWQWFTVGSGS 60 MW+ ++P+ N+ WQ+LVL++ +WH +R+ Q AFFFGEPL V R+W WFT GSG+ Sbjct: 1 MWRRIRPTSGNVRIWQVLVLLLFFLLWHWISRDIQVAFFFGEPLIVLGRVWAWFTSGSGN 60 Query: 61 LEVGFGDTTFFTLNFPAEIYSHLLVTLTETVLAFGIGTVLGLGIGLWLALSPLASAILDP 120 LEVG GD+T+FTL+FP EIYSHLL+TLTET+LAFGIGTV+GLG+GLWLALSPL SAILDP Sbjct: 61 LEVGLGDSTWFTLHFPGEIYSHLLITLTETLLAFGIGTVMGLGVGLWLALSPLTSAILDP 120 Query: 121 YVKAANSMPRVILAPIFAMWFGLGIWSKVALAVTLVFFIVFFNVYQGVKEVSPVVLANAR 180 Y+KAANSMPRVILAPIF MWFGLGIWSKVALA+TLVFFIVFFNVYQGVKEVSPVVLANAR Sbjct: 121 YIKAANSMPRVILAPIFGMWFGLGIWSKVALAITLVFFIVFFNVYQGVKEVSPVVLANAR 180 Query: 181 MLGANARQLLRTVYLPSATSWVFSSLHTSIGLAFVGAVVGEYLGSARGVGYLILQAEGSF 240 MLGANARQLLR+VYLPSATSWVFSSLHTS+GLAFVGA+VGEY+GSARGVGYLILQAEG+F Sbjct: 181 MLGANARQLLRSVYLPSATSWVFSSLHTSVGLAFVGAIVGEYMGSARGVGYLILQAEGTF 240 Query: 241 DINTVFAGIVVLTAFALVLDVAVGVIEKRLMKWQPKSGETEKM 283 DINTVFAGI+VLT FALVLD AVG++EKRLMKWQPKSGETEK+ Sbjct: 241 DINTVFAGILVLTLFALVLDGAVGLVEKRLMKWQPKSGETEKL 283 >Q12B93.1 Q12B93_POLSJ Binding-protein-dependent transport systems inner membrane component Length = 279 Score = 432 bits (1111), Expect = e-119, Method: Compositional matrix adjust. Identities = 222/285 (77%), Positives = 244/285 (85%), Gaps = 8/285 (2%) Query: 1 MWKLLKPSHKNLLFWQLLVLVVVLAVWHIATRNEQTAFFFGEPLKVAVRIWQWFTVGSGS 60 MW+ +KPS KNL WQ +LV +LA WH+A+R++Q AFF GEP+KVA R+W WF Sbjct: 1 MWRHIKPSGKNLRIWQAGLLVFMLAGWHLASRDQQIAFFLGEPIKVAGRVWSWF------ 54 Query: 61 LEVGFGDTTFFTLNFP--AEIYSHLLVTLTETVLAFGIGTVLGLGIGLWLALSPLASAIL 118 + GFG + F P A+IY HL TL ETVLAFGIGTVLGL GLWLAL+P ASAIL Sbjct: 55 MPFGFGGSRLFPDGLPGNADIYLHLGTTLLETVLAFGIGTVLGLVCGLWLALAPTASAIL 114 Query: 119 DPYVKAANSMPRVILAPIFAMWFGLGIWSKVALAVTLVFFIVFFNVYQGVKEVSPVVLAN 178 DPY+KAANSMPRVILAPIFA+WFGLGIWSKVALAVTLVFFIVFFNVYQGVKEVSPVVLAN Sbjct: 115 DPYIKAANSMPRVILAPIFALWFGLGIWSKVALAVTLVFFIVFFNVYQGVKEVSPVVLAN 174 Query: 179 ARMLGANARQLLRTVYLPSATSWVFSSLHTSIGLAFVGAVVGEYLGSARGVGYLILQAEG 238 ARMLGAN RQLLRTVYLPSATSWVFSSLHTS+GLAFVGAVVGEYLGSARGVGYLILQAEG Sbjct: 175 ARMLGANHRQLLRTVYLPSATSWVFSSLHTSVGLAFVGAVVGEYLGSARGVGYLILQAEG 234 Query: 239 SFDINTVFAGIVVLTAFALVLDVAVGVIEKRLMKWQPKSGETEKM 283 +FD+NTVFAGI VLTAFALVLD VG +EKRLMKWQP+SGETEK+ Sbjct: 235 TFDVNTVFAGIAVLTAFALVLDGIVGKLEKRLMKWQPRSGETEKL 279 >C5CYK4.1 C5CYK4_VARPS Binding-protein-dependent transport systems inner membrane component Length = 277 Score = 414 bits (1064), Expect = e-114, Method: Compositional matrix adjust. Identities = 211/276 (76%), Positives = 237/276 (85%), Gaps = 4/276 (1%) Query: 8 SHKNLLFWQLLVLVVVLAVWHIATRNEQTAFFFGEPLKVAVRIWQWFTVGSGSLEVGFGD 67 + +N FWQL++L ++L WH+A+RN+Q AFF GEP++VA RIW WF + F + Sbjct: 6 NERNARFWQLVLLAIILVGWHLASRNQQIAFFLGEPIQVAGRIWSWFLPFEVPPNLLFPE 65 Query: 68 TTFFTLNFPAEIYSHLLVTLTETVLAFGIGTVLGLGIGLWLALSPLASAILDPYVKAANS 127 L A+IY HL TL ETVLAFGIGTVLGL GLWLAL+P AS ILDPY+KAANS Sbjct: 66 G----LKGNADIYRHLGTTLLETVLAFGIGTVLGLACGLWLALAPTASLILDPYIKAANS 121 Query: 128 MPRVILAPIFAMWFGLGIWSKVALAVTLVFFIVFFNVYQGVKEVSPVVLANARMLGANAR 187 MPRVILAPIFA+WFGLGIWSKVALAVTLVFFIVFFNVYQGV+EVSPVVLANA+MLGAN R Sbjct: 122 MPRVILAPIFALWFGLGIWSKVALAVTLVFFIVFFNVYQGVREVSPVVLANAKMLGANQR 181 Query: 188 QLLRTVYLPSATSWVFSSLHTSIGLAFVGAVVGEYLGSARGVGYLILQAEGSFDINTVFA 247 QLLRTVYLPSATSWVFSSLHTS+GLAFVGAVVGEYLGSARGVGYLILQAEG+FD+NTVFA Sbjct: 182 QLLRTVYLPSATSWVFSSLHTSVGLAFVGAVVGEYLGSARGVGYLILQAEGTFDVNTVFA 241 Query: 248 GIVVLTAFALVLDVAVGVIEKRLMKWQPKSGETEKM 283 GIVVLTAFAL+LD VG+IEKRLMKWQP+SGETEK+ Sbjct: 242 GIVVLTAFALLLDGLVGLIEKRLMKWQPRSGETEKL 277 >B2JG64.1 B2JG64_BURP8 Binding-protein-dependent transport systems inner membrane component Length = 274 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 210/294 (71%), Positives = 234/294 (79%), Gaps = 31/294 (10%) Query: 1 MWKLLKPSHKNLLFWQLLVLVVVLAVWHIAT-----------RNEQTAFFFGEPLKVAVR 49 MWK L+P+ NL+ WQ L+LV+ +W++ T + AFFFGEP KV VR Sbjct: 1 MWKALRPNRTNLVMWQWLMLVLCFVLWYVLTSPTLLPAFYFDDPNKAAFFFGEPQKVLVR 60 Query: 50 IWQWFTVGSGSLEVGFGDTTFFTLNFPAEIYSHLLVTLTETVLAFGIGTVLGLGIGLWLA 109 IW+WF G EIY HL +TL ETVLAF +GTVLGLG+GLWLA Sbjct: 61 IWEWFASG--------------------EIYLHLWITLIETVLAFALGTVLGLGVGLWLA 100 Query: 110 LSPLASAILDPYVKAANSMPRVILAPIFAMWFGLGIWSKVALAVTLVFFIVFFNVYQGVK 169 LSPLASA+ DPY+KAANSMPRVILAPIF +WFGLGIWSKVAL VTLVFFIVFFNVYQGVK Sbjct: 101 LSPLASALFDPYIKAANSMPRVILAPIFGVWFGLGIWSKVALGVTLVFFIVFFNVYQGVK 160 Query: 170 EVSPVVLANARMLGANARQLLRTVYLPSATSWVFSSLHTSIGLAFVGAVVGEYLGSARGV 229 EVSPVVLANARMLGAN +QLLR VYLPSA SWVFSSLHTS+GLAFVG+VVGEYLGSARGV Sbjct: 161 EVSPVVLANARMLGANRKQLLRAVYLPSAMSWVFSSLHTSVGLAFVGSVVGEYLGSARGV 220 Query: 230 GYLILQAEGSFDINTVFAGIVVLTAFALVLDVAVGVIEKRLMKWQPKSGETEKM 283 GYLILQAEG+FDINTVFAGI+VLTAFAL+LD VGV+EKRLMKWQPKSGETEK+ Sbjct: 221 GYLILQAEGTFDINTVFAGILVLTAFALILDAIVGVLEKRLMKWQPKSGETEKI 274