BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0055.p (301 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8J1J9.1 D8J1J9_HERSS Transcription regulator, LysR family protein 469 e-130 A4G340.1 A4G340_HERAR HTH-type transcriptional regulator ilvR (I... 468 e-130 A6SVP4.1 A6SVP4_JANMA Transcriptional regulators, LysR family 459 e-127 F1VWJ4.1 F1VWJ4_9BURK Putative transcriptional regulator (LysR f... 424 e-117 B1JWU7.1 B1JWU7_BURCC Transcriptional regulator, LysR family 358 7e-97 >D8J1J9.1 D8J1J9_HERSS Transcription regulator, LysR family protein Length = 300 Score = 469 bits (1207), Expect = e-130, Method: Compositional matrix adjust. Identities = 246/299 (82%), Positives = 267/299 (89%) Query: 1 MNTESRLELRQLRYFVAVAEEKHFGRAAIRLHMTQPPLSQTIQALEEMLGTPLFARTKRS 60 M+ RLELRQLRYF AVAEE HFGRAA RLHMTQPPLSQTI ALEE+LGTPLF RTKRS Sbjct: 1 MSDLPRLELRQLRYFAAVAEEMHFGRAAARLHMTQPPLSQTIAALEELLGTPLFQRTKRS 60 Query: 61 VALTPAGLALLPEAQRLLQQASALPDLARRAASGASGLLSLSFISTADYSILPPLLQRFR 120 VALT AG ALLPEAQRLLQQA+ALPDL RRAASGASGLLSLSFIS+ADYSILPPLLQRFR Sbjct: 61 VALTAAGAALLPEAQRLLQQAAALPDLVRRAASGASGLLSLSFISSADYSILPPLLQRFR 120 Query: 121 ARYPQVQIDLREATTDIQLEDLMQGKIDAGLLLPPLPDKSKAALDYLPLLSEPLVAAVPS 180 A YPQVQI+LREATTD+QLEDL+QGKIDAGLLLPPLP+K+ A L+ P+LSEPL+AA+P Sbjct: 121 AHYPQVQIELREATTDVQLEDLLQGKIDAGLLLPPLPEKAAALLEVRPVLSEPLIAALPE 180 Query: 181 GVVRGKNAVALKSLRELPLIIFPRRISPAFHDTILSCFRDAGVTPHIGQEAIQMQTIVGL 240 G VR + V+LKSLRELPLIIFPRRI+PAFHDTILSCFRDAGVTPHIGQEAIQMQTIVGL Sbjct: 181 GAVRKRGPVSLKSLRELPLIIFPRRIAPAFHDTILSCFRDAGVTPHIGQEAIQMQTIVGL 240 Query: 241 VSAGMGMALVPQSVSNLQRPGVDYRPLSGKTPLIETGLAWRRDSASPVLRAFLDMVASP 299 VSAGMGMALVPQSVSNL+RPGVDYR LS P I+T LAWRRDS S VLRA L+++ P Sbjct: 241 VSAGMGMALVPQSVSNLKRPGVDYRRLSDPAPAIQTSLAWRRDSPSSVLRALLELLDEP 299 >A4G340.1 A4G340_HERAR HTH-type transcriptional regulator ilvR (Isoleucine biosynthesis transcriptional activator) Length = 297 Score = 468 bits (1205), Expect = e-130, Method: Compositional matrix adjust. Identities = 226/293 (77%), Positives = 261/293 (89%), Gaps = 2/293 (0%) Query: 6 RLELRQLRYFVAVAEEKHFGRAAIRLHMTQPPLSQTIQALEEMLGTPLFARTKRSVALTP 65 +ELRQLRYFV VAEE HFGRAAIRLHMTQPPLSQ IQ+LE MLG LF RT RSVALTP Sbjct: 2 NIELRQLRYFVTVAEEMHFGRAAIRLHMTQPPLSQAIQSLEAMLGVQLFRRTSRSVALTP 61 Query: 66 AGLALLPEAQRLLQQASALPDLARRAASGASGLLSLSFISTADYSILPPLLQRFRARYPQ 125 AG ALLPEAQR+LQQ +ALPDL RR SGASG LSL+F+STADYS+LPP L+ FR YP Sbjct: 62 AGSALLPEAQRILQQTAALPDLMRRVTSGASGRLSLAFVSTADYSVLPPFLREFRESYPG 121 Query: 126 VQIDLREATTDIQLEDLMQGKIDAGLLLPPLPDKSKAALDYLPLLSEPLVAAVPSGV--V 183 V+IDLREATTD+QL+DLMQG+ID GLL+PPLPDK+K LDYLP+LSEPL+ A P G+ + Sbjct: 122 VEIDLREATTDVQLDDLMQGRIDVGLLIPPLPDKAKLQLDYLPVLSEPLILAAPKGLKAL 181 Query: 184 RGKNAVALKSLRELPLIIFPRRISPAFHDTILSCFRDAGVTPHIGQEAIQMQTIVGLVSA 243 +GK +VAL+SL ELPLIIFPRRI+PAFHD ILSC+RDAG+TPHIGQEAIQMQTI+GLVSA Sbjct: 182 KGKQSVALQSLAELPLIIFPRRIAPAFHDAILSCYRDAGLTPHIGQEAIQMQTIIGLVSA 241 Query: 244 GMGMALVPQSVSNLQRPGVDYRPLSGKTPLIETGLAWRRDSASPVLRAFLDMV 296 GMG+ALVPQSVSNL+RPGVDY+PL+ KTPL+ETGLAWRRD+ASPVL+AFL+++ Sbjct: 242 GMGIALVPQSVSNLKRPGVDYKPLANKTPLVETGLAWRRDNASPVLKAFLELL 294 >A6SVP4.1 A6SVP4_JANMA Transcriptional regulators, LysR family Length = 297 Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust. Identities = 221/292 (75%), Positives = 261/292 (89%), Gaps = 2/292 (0%) Query: 7 LELRQLRYFVAVAEEKHFGRAAIRLHMTQPPLSQTIQALEEMLGTPLFARTKRSVALTPA 66 +ELRQLR+FV VAEE HFGRAA+RLHMTQPPLSQ+IQALE +LG LF RT RSVALTPA Sbjct: 3 IELRQLRHFVTVAEEMHFGRAALRLHMTQPPLSQSIQALEALLGVQLFRRTSRSVALTPA 62 Query: 67 GLALLPEAQRLLQQASALPDLARRAASGASGLLSLSFISTADYSILPPLLQRFRARYPQV 126 G+ALLPEAQR+LQQ +ALPDL RRAASGASG LSL+F+STADYS+LP L+ FR YPQV Sbjct: 63 GIALLPEAQRILQQTAALPDLMRRAASGASGRLSLAFVSTADYSVLPHFLREFREAYPQV 122 Query: 127 QIDLREATTDIQLEDLMQGKIDAGLLLPPLPDKSKAALDYLPLLSEPLVAAVPSGV--VR 184 +IDLREATTD+QL++L QG+ID GLL+PPLPDK+K LDYLP+LSEPL+ AVP G+ VR Sbjct: 123 EIDLREATTDVQLDELAQGRIDVGLLIPPLPDKAKLQLDYLPVLSEPLILAVPKGLKAVR 182 Query: 185 GKNAVALKSLRELPLIIFPRRISPAFHDTILSCFRDAGVTPHIGQEAIQMQTIVGLVSAG 244 GK VAL+++ ELPLIIFPRRI+PAFHD IL+C+RDAG+TPHIGQEAIQMQTI+GLVSAG Sbjct: 183 GKQTVALQAVAELPLIIFPRRIAPAFHDAILACYRDAGLTPHIGQEAIQMQTIIGLVSAG 242 Query: 245 MGMALVPQSVSNLQRPGVDYRPLSGKTPLIETGLAWRRDSASPVLRAFLDMV 296 MG+ALVPQSVSNL+RPGVDY+ L+ KTPL+ETG+AWRRD+ SPVL AFL+++ Sbjct: 243 MGIALVPQSVSNLKRPGVDYKALADKTPLVETGMAWRRDNTSPVLNAFLELL 294 >F1VWJ4.1 F1VWJ4_9BURK Putative transcriptional regulator (LysR family) Length = 298 Score = 424 bits (1090), Expect = e-117, Method: Compositional matrix adjust. Identities = 213/292 (72%), Positives = 244/292 (83%), Gaps = 2/292 (0%) Query: 7 LELRQLRYFVAVAEEKHFGRAAIRLHMTQPPLSQTIQALEEMLGTPLFARTKRSVALTPA 66 +ELRQLRYFV VAEE HFGRAA RLHMTQPPLSQTIQALE LG LFART RSVALTPA Sbjct: 3 IELRQLRYFVTVAEELHFGRAAARLHMTQPPLSQTIQALEAGLGHRLFARTNRSVALTPA 62 Query: 67 GLALLPEAQRLLQQASALPDLARRAASGASGLLSLSFISTADYSILPPLLQRFRARYPQV 126 G ALL EA+RLL QA ALP+L R AASG SG L L+F+STADYS+LPP L+ FR YPQV Sbjct: 63 GSALLTEARRLLAQAHALPELVRLAASGESGRLVLAFVSTADYSVLPPFLREFREHYPQV 122 Query: 127 QIDLREATTDIQLEDLMQGKIDAGLLLPPLPDKSKAALDYLPLLSEPLVAAVPSGV--VR 184 I+LREATTDIQL+DL Q +ID GLL+ PLP+KS L YL +LSEPL+ A P G+ + Sbjct: 123 HIELREATTDIQLDDLAQNRIDVGLLIAPLPEKSATELAYLRVLSEPLILAAPKGIKALA 182 Query: 185 GKNAVALKSLRELPLIIFPRRISPAFHDTILSCFRDAGVTPHIGQEAIQMQTIVGLVSAG 244 G AV+LK++ LPLIIFPRRI+PAFHD IL+ FR AG+TPHIGQEAIQMQTIVGLVSAG Sbjct: 183 GSTAVSLKAVAGLPLIIFPRRIAPAFHDAILATFRAAGLTPHIGQEAIQMQTIVGLVSAG 242 Query: 245 MGMALVPQSVSNLQRPGVDYRPLSGKTPLIETGLAWRRDSASPVLRAFLDMV 296 MG+ALVPQSVSNL+RPGV+Y+ L GKTPL++TGLAWRRD+ SPVL AFLD++ Sbjct: 243 MGIALVPQSVSNLKRPGVEYKTLRGKTPLVDTGLAWRRDNHSPVLHAFLDLL 294 >B1JWU7.1 B1JWU7_BURCC Transcriptional regulator, LysR family Length = 304 Score = 358 bits (918), Expect = 7e-97, Method: Compositional matrix adjust. Identities = 180/291 (61%), Positives = 223/291 (76%), Gaps = 2/291 (0%) Query: 8 ELRQLRYFVAVAEEKHFGRAAIRLHMTQPPLSQTIQALEEMLGTPLFARTKRSVALTPAG 67 +LRQ RYFV VA+E+HFGRAA RL MTQPPLSQ I+ALE+ LG LF RTKRSVALT G Sbjct: 7 DLRQWRYFVTVADERHFGRAAERLSMTQPPLSQAIRALEDTLGVALFVRTKRSVALTAVG 66 Query: 68 LALLPEAQRLLQQASALPDLARRAASGASGLLSLSFISTADYSILPPLLQRFRARYPQVQ 127 ALLP+ +RLL A ALP LARR A G +G LSL+F+STADY +LP LL+ F ARYPQV+ Sbjct: 67 AALLPDVRRLLASADALPPLARRLARGEAGSLSLAFVSTADYGLLPSLLRAFGARYPQVR 126 Query: 128 IDLREATTDIQLEDLMQGKIDAGLLLPPLPDKSKAALDYLPLLSEPLVAAVPSGVVRGKN 187 + L EAT+D+Q+++L+ G+IDAGL++PP+P + A L YLP++ EPLV A+P+GV Sbjct: 127 LQLAEATSDVQIDELVAGRIDAGLVIPPVPPRHAAGLSYLPVVREPLVVAMPAGVSDAPE 186 Query: 188 A--VALKSLRELPLIIFPRRISPAFHDTILSCFRDAGVTPHIGQEAIQMQTIVGLVSAGM 245 V L + LPL+IFPRR++P F+D I C+ AG TPHIGQEAIQMQTIV LVSAGM Sbjct: 187 DVPVQLAEVAALPLVIFPRRLAPGFYDIITGCYGAAGETPHIGQEAIQMQTIVSLVSAGM 246 Query: 246 GMALVPQSVSNLQRPGVDYRPLSGKTPLIETGLAWRRDSASPVLRAFLDMV 296 G+ALVPQS+ NL+R GV YRPL+G P++ETGL WR SPVL F+D+V Sbjct: 247 GVALVPQSLRNLRRTGVVYRPLAGPAPVVETGLVWRTGDVSPVLAGFIDVV 297