BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0026.p (401 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IPM9.1 D8IPM9_HERSS Outer membrane efflux protein 582 e-164 A6T3S1.1 A6T3S1_JANMA Outer membrane efflux protein 321 1e-85 D6V6D1.1 D6V6D1_9BRAD RND efflux system, outer membrane lipoprot... 317 2e-84 B6JI36.1 B6JI36_OLICO RND efflux system, outer membrane lipoprot... 317 3e-84 E4QIG6.1 E4QIG6_METS6 RND efflux system, outer membrane lipoprot... 313 2e-83 >D8IPM9.1 D8IPM9_HERSS Outer membrane efflux protein Length = 492 Score = 582 bits (1499), Expect = e-164, Method: Compositional matrix adjust. Identities = 312/389 (80%), Positives = 346/389 (88%) Query: 2 SRVRQAEANARIAGAPLLPDADFAGSANRALPLSGGTPTTTASGMLEINYEVDFWGKNRA 61 SRV+QAEA ARIAGAPLLP A A R +P+SGGTPT TA+ L+++YE+DFWGKNRA Sbjct: 102 SRVKQAEAQARIAGAPLLPSAGINAGAAREIPISGGTPTNTANASLQVSYEIDFWGKNRA 161 Query: 62 GLAAAEASLRANMYDRETVALTVTSGIVSTFLQVLSLRDRLEIARQNVGNAQRVLKLVEA 121 G+ AAEA+LRAN YDRETVALTVTSGIVST+LQVLSLRDRL IARQNV NA+RVL+LVEA Sbjct: 162 GVEAAEATLRANRYDRETVALTVTSGIVSTYLQVLSLRDRLAIARQNVQNAERVLRLVEA 221 Query: 122 QSRAGAASPLDLARQRSALANQQAALPDLMQQERDAQTALAILLGRPPQNFSVGEKGLAT 181 QSRAG+ASPLDLARQRSALANQ+ +PDL QQE+DAQTALAILLGRPPQNF V EKGLA Sbjct: 222 QSRAGSASPLDLARQRSALANQRQLIPDLQQQEQDAQTALAILLGRPPQNFKVEEKGLAR 281 Query: 182 IQMPKIAPGLPSELLTRRPDIRRAEARLAEANANVAVARAALFPSIRLTGSTGAQSNALL 241 IQMP+I+ GLPSELLTRRPDIRRAEA LA ANANVAVARAALFPSI LTGSTGAQS+ALL Sbjct: 282 IQMPRISAGLPSELLTRRPDIRRAEASLAAANANVAVARAALFPSITLTGSTGAQSSALL 341 Query: 242 SLFDGPNLLANLGASLTAPIFDAGRLNSRRDLAVAQKQELVQVYRSAVVSALSEVEKSLG 301 SLFDGPNL ANLGA L APIFD G+L +RDLA+AQK+ELVQVYR V+++LSEVEK+LG Sbjct: 342 SLFDGPNLFANLGAGLIAPIFDGGKLRGQRDLAIAQKEELVQVYRQRVITSLSEVEKALG 401 Query: 302 AIRTLEERYRLKNQEVDQARFAFELSEIRYRSGAEDLMVVLDTQRILSEAQNQLGQIKLQ 361 AIR+LEERYRLK EVDQARFAFEL+EIRYR+GAEDL+VVLDTQR LSEAQNQLGQIKLQ Sbjct: 402 AIRSLEERYRLKVGEVDQARFAFELAEIRYRAGAEDLLVVLDTQRTLSEAQNQLGQIKLQ 461 Query: 362 RLQATVSLYKALGGGWRDDVRYGNPGTDS 390 RLQATVSLYKALGGGW+D G+ GT S Sbjct: 462 RLQATVSLYKALGGGWQDSQAPGDSGTSS 490 >A6T3S1.1 A6T3S1_JANMA Outer membrane efflux protein Length = 473 Score = 321 bits (823), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 185/385 (48%), Positives = 258/385 (67%), Gaps = 12/385 (3%) Query: 1 MSRVRQAEANARIAGAPLLPD--ADFAGSANRALPLSGGTPTTTASGM-----LEINYEV 53 ++RV QA+A A IAGA LLP+ +F + N L GG TA+G L YE+ Sbjct: 80 VARVTQAQATATIAGAALLPELNGNFGATRNGRL---GGDGNGTATGTVYQAGLSATYEL 136 Query: 54 DFWGKNRAGLAAAEASLRANMYDRETVALTVTSGIVSTFLQVLSLRDRLEIARQNVGNAQ 113 DFWG+NRA +A A LRA +DR+TV LTVT+G+ S++LQ + LR+R+ IA +V +AQ Sbjct: 137 DFWGRNRAVRDSARAGLRAAEFDRDTVHLTVTAGVASSWLQTVGLRERVAIADLSVASAQ 196 Query: 114 RVLKLVEAQSRAGAASPLDLARQRSALANQQAALPDLMQQERDAQTALAILLGRPPQNFS 173 R+L ++E+++RAGAA+PL+LA+QR LA Q A + QQ D+ T LA+LLGR P Sbjct: 197 RLLDVIESRARAGAANPLELAQQRGVLAAQMRARAAIRQQAEDSLTTLAVLLGRNPSLLV 256 Query: 174 VGEKGLATIQMPKIAPGLPSELLTRRPDIRRAEARLAEANANVAVARAALFPSIRLTGST 233 + L +Q P + GLP++LL RRPDI RAEA+L+ A+AN+ ARAA+ P I L G Sbjct: 257 LAGTELNKLQAPAVVAGLPADLLVRRPDIARAEAQLSGADANIIAARAAMLPRISLGGDI 316 Query: 234 GAQSNALLSLFDGPNLLANLGASLTAPIFDAGRLNSRRDLAVAQKQELVQVYRSAVVSAL 293 A SN + S+FD P + +L A L APIF+AGRL + RDLA+AQ++EL+ YR A+V+A Sbjct: 317 TAGSNRVSSVFDNP--VYSLAAGLAAPIFNAGRLAAGRDLALAQREELLANYRRAIVAAF 374 Query: 294 SEVEKSLGAIRTLEERYRLKNQEVDQARFAFELSEIRYRSGAEDLMVVLDTQRILSEAQN 353 +VE +L A+ ++ + + +E+ QA+ AF L+E RYR+GAE + +LD QR L AQ+ Sbjct: 375 GDVEVALNAVAGIDAQRIAQEEELRQAQRAFNLAESRYRAGAETSLTLLDAQRTLYAAQD 434 Query: 354 QLGQIKLQRLQATVSLYKALGGGWR 378 Q++ RLQA VSLYKALGGGW+ Sbjct: 435 AAAQLRTLRLQAAVSLYKALGGGWQ 459 >D6V6D1.1 D6V6D1_9BRAD RND efflux system, outer membrane lipoprotein, NodT family Length = 498 Score = 317 bits (812), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 183/385 (47%), Positives = 242/385 (62%), Gaps = 9/385 (2%) Query: 2 SRVRQAEANARIAGAPLLPDADFAGSANRALPLSG----GT-----PTTTASGMLEINYE 52 +R+ QA+A AR AGA LLP D SA R+ SG GT T S L +YE Sbjct: 99 ARILQADALARTAGAALLPTLDANASATRSKSSSGFLNNGTAAARGTINTYSTSLSASYE 158 Query: 53 VDFWGKNRAGLAAAEASLRANMYDRETVALTVTSGIVSTFLQVLSLRDRLEIARQNVGNA 112 VD W KNR L AAE + AN +DR+TVALT + + + QVL+ +DR+ A++N+ +A Sbjct: 159 VDLWAKNRDALLAAEKTADANRFDRDTVALTSMVSVANAYFQVLAAQDRIATAQRNIASA 218 Query: 113 QRVLKLVEAQSRAGAASPLDLARQRSALANQQAALPDLMQQERDAQTALAILLGRPPQNF 172 QR+ ++ + AG S LDLA+Q S LANQ+AA+P L Q LA L+ RPP+ Sbjct: 219 QRIYDAIKTRVDAGTGSDLDLAQQESLLANQRAAVPPLRQTLTQNINILATLVARPPERV 278 Query: 173 SVGEKGLATIQMPKIAPGLPSELLTRRPDIRRAEARLAEANANVAVARAALFPSIRLTGS 232 + LA I P++ PGLPSELL +RPDIRR EA+LA A ANV ARA FPSI+LTG Sbjct: 279 HIKGGSLARISAPRVTPGLPSELLIQRPDIRRQEAQLASATANVGSARAQFFPSIQLTGQ 338 Query: 233 TGAQSNALLSLFDGPNLLANLGASLTAPIFDAGRLNSRRDLAVAQKQELVQVYRSAVVSA 292 G QS+AL +LF + +L A LT PIFDAGR+ + DL AQ+ EL+Q YR V+SA Sbjct: 339 GGYQSSALSALFMPQSAFFSLAAGLTQPIFDAGRIQANFDLTKAQQDELLQTYRKTVISA 398 Query: 293 LSEVEKSLGAIRTLEERYRLKNQEVDQARFAFELSEIRYRSGAEDLMVVLDTQRILSEAQ 352 S+V+ +L AI+ R RL+ V +R AFELSE + ++G D++ VL+TQ+ L A+ Sbjct: 399 FSDVDTALDAIKQTTNRLRLQRIVVKSSRRAFELSEKQLQAGTADIVTVLNTQQTLFTAE 458 Query: 353 NQLGQIKLQRLQATVSLYKALGGGW 377 + L Q +L LQA VSL+ ALGGGW Sbjct: 459 DTLQQAQLAWLQAYVSLFSALGGGW 483 >B6JI36.1 B6JI36_OLICO RND efflux system, outer membrane lipoprotein, NodT Length = 512 Score = 317 bits (811), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 182/385 (47%), Positives = 243/385 (63%), Gaps = 9/385 (2%) Query: 2 SRVRQAEANARIAGAPLLPDADFAGSANRALPLSG----GT-----PTTTASGMLEINYE 52 +R+ QA+A R AGA LLP D SA R+ SG GT T S L +YE Sbjct: 109 ARLLQADAMTRTAGAALLPTLDANASATRSKSSSGYLNNGTVAARGTINTYSTSLSASYE 168 Query: 53 VDFWGKNRAGLAAAEASLRANMYDRETVALTVTSGIVSTFLQVLSLRDRLEIARQNVGNA 112 +D WGKNR L AAE S A+ YDR+TVALT + + + + QVL+ +DR+ A +N+ +A Sbjct: 169 IDLWGKNRDALLAAEESANASRYDRDTVALTAMASVANAYFQVLAAQDRIATAERNIASA 228 Query: 113 QRVLKLVEAQSRAGAASPLDLARQRSALANQQAALPDLMQQERDAQTALAILLGRPPQNF 172 +R+ ++A+ AG S LDLA+Q S LANQ+AA+P L Q LA L+ RPP+ Sbjct: 229 KRIYDAIKARVDAGTGSDLDLAQQESLLANQRAAVPPLRQTLTQNLNILATLVARPPERV 288 Query: 173 SVGEKGLATIQMPKIAPGLPSELLTRRPDIRRAEARLAEANANVAVARAALFPSIRLTGS 232 + L + P++ PGLPSELL +RPDIRR EA+LA A ANV ARA FPSI+LTG Sbjct: 289 HIRGGSLGRVSAPRVTPGLPSELLIQRPDIRRQEAQLASATANVGSARAQFFPSIQLTGQ 348 Query: 233 TGAQSNALLSLFDGPNLLANLGASLTAPIFDAGRLNSRRDLAVAQKQELVQVYRSAVVSA 292 G QS AL +LF + NL A LT PIFDAGR+ + DL AQ+ EL+Q YR V+SA Sbjct: 349 GGYQSAALSALFMPQSAFFNLAAGLTQPIFDAGRIQANFDLTKAQQDELLQTYRKTVISA 408 Query: 293 LSEVEKSLGAIRTLEERYRLKNQEVDQARFAFELSEIRYRSGAEDLMVVLDTQRILSEAQ 352 S+V +L AIR +R RL+ V +R AF+LSE + R+G D++ VL+TQ+ L +A+ Sbjct: 409 FSDVNTALDAIRQTAQRLRLQRVVVASSRRAFKLSEDQLRAGTADIITVLNTQQTLFQAE 468 Query: 353 NQLGQIKLQRLQATVSLYKALGGGW 377 + L Q +L LQ+ VSL++ALGGGW Sbjct: 469 DTLLQAQLAWLQSYVSLFQALGGGW 493 >E4QIG6.1 E4QIG6_METS6 RND efflux system, outer membrane lipoprotein, NodT family Length = 495 Score = 313 bits (803), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 186/382 (48%), Positives = 260/382 (68%), Gaps = 10/382 (2%) Query: 2 SRVRQAEANARIAGAPLLPDADFAGSANRALPL-----SGGTPTTTASGMLEINYEVDFW 56 +RV QA A ARIAGAPLLP+ + +A+R L + G+ T A L +YEVDFW Sbjct: 112 ARVEQAVAQARIAGAPLLPELNLGVNASRQDYLDSHRTADGSSHTVA---LAASYEVDFW 168 Query: 57 GKNRAGLAAAEASLRANMYDRETVALTVTSGIVSTFLQVLSLRDRLEIARQNVGNAQRVL 116 G+NRA A L+++ +D +TV LT+TSG+ +LQVL L +RL IA NV NA RVL Sbjct: 169 GRNRALRDRARYQLQSSRHDLDTVQLTLTSGVARLYLQVLGLAERLSIAELNVANASRVL 228 Query: 117 KLVEAQSRAGAASPLDLARQRSALANQQAALPDLMQQERDAQTALAILLGRPPQNFSVGE 176 ++VEA+ RAGAA+ L++A+QR LA+QQ L L QQ D +TALA+L+G PP + Sbjct: 229 EVVEARYRAGAATALEVAQQRGLLASQQRTLETLRQQLADGKTALAVLIGLPPAELVISG 288 Query: 177 KGLATIQMPKIAPGLPSELLTRRPDIRRAEARLAEANANVAVARAALFPSIRLTGSTGAQ 236 +GL +Q P+I PGLP++LL RRPDI RAEA LA A+AN ARAA+ P ++LTGS G Sbjct: 289 QGLQGVQTPQITPGLPAQLLVRRPDIARAEAALAAADANTIAARAAMLPRVQLTGSLGLG 348 Query: 237 SNALLSLFDGPNLLANLGASLTAPIFDAGRLNSRRDLAVAQKQELVQVYRSAVVSALSEV 296 + P + ++ A+LTAP+F+AGRL + RDLA+AQ+ EL+Q YR+A+V+A +V Sbjct: 349 GEQWSDMLAHP--IYSVAAALTAPVFNAGRLAAGRDLALAQRTELLQNYRAAIVAAFGDV 406 Query: 297 EKSLGAIRTLEERYRLKNQEVDQARFAFELSEIRYRSGAEDLMVVLDTQRILSEAQNQLG 356 E +L A++ +E++ R +++E+ QA AF L+E RYR+GA+ L+ +LD QR AQ+Q Sbjct: 407 ETALNAVQAIEQQRRWQSEELAQAERAFRLAETRYRAGADTLLTMLDAQRTWYSAQDQAV 466 Query: 357 QIKLQRLQATVSLYKALGGGWR 378 Q+ L LQ V+L+KALGGGW+ Sbjct: 467 QLTLANLQGRVALFKALGGGWQ 488