BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0007.p (283 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8J219.1 D8J219_HERSS ABC-type transport system, periplasmic com... 290 2e-76 A9IP27.1 A9IP27_BORPD ABC transporter, substrate binding protein 171 9e-41 E3HJ01.1 E3HJ01_ACHXA ABC transporter, substrate binding protein 2 158 9e-37 D4XDW3.1 D4XDW3_9BURK Putative uncharacterized protein 158 1e-36 Q7WI29.1 Q7WI29_BORBR Putative substrate-binding protein 152 5e-35 >D8J219.1 D8J219_HERSS ABC-type transport system, periplasmic component protein Length = 263 Score = 290 bits (742), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 160/271 (59%), Positives = 189/271 (69%), Gaps = 17/271 (6%) Query: 13 LSAFVLAVSAFTGAQAGVLDDARTRGAVRIGQNYVPPAYTAGAKFRTPEGVDVILAEDIA 72 L++ L V A AQAGVLDDAR +RIG ++VPP Y G KFRTPE + +LAED+A Sbjct: 10 LTSVCLLVGA---AQAGVLDDARRSEQLRIGLDHVPPVYKGGMKFRTPENIATVLAEDLA 66 Query: 73 KRLNLRLDSVRNTNNAGTGDDGKAVQALKGARPDIALVTVEEGAARSGTAADGSVLIPTG 132 + L+ D N + ALKG RPD+ L V+ A +AAD + LIPTG Sbjct: 67 AQWKLKADLQPNVADRA---------ALKGVRPDVVLTRVDPAQA---SAADAT-LIPTG 113 Query: 133 YSAGAMAIMRTDTDIRKWEQLKGRTVCLSEGGSYVGQMTARYGAVEKVMRAPADSLLAVR 192 YSAG MAIMR+DT IRKW+ LKGRTVC+S G YVG ++ARYGA+EKVM APADSLLAVR Sbjct: 114 YSAGGMAIMRSDTTIRKWDDLKGRTVCVSSGSPYVGTLSARYGAIEKVMPAPADSLLAVR 173 Query: 193 IGQCDAAVHDDTMLKELLKLPEWKKFSAQLPPQSRSMLMVKVPVADGAAIAYFRQTVAEW 252 IGQCDAAVHDDT+LK LLKLPEWKKFSAQL P SR +L+++V D A +A RQ A W Sbjct: 174 IGQCDAAVHDDTLLKVLLKLPEWKKFSAQLAPVSRQVLVLQVRGNDPADLAAARQAAARW 233 Query: 253 SRGDFWTAQKKKWSNTVAFEVYLDQNVPDCH 283 + FW +KW N VAFEVYLDQNVPDCH Sbjct: 234 NDA-FWLNAIRKWVNNVAFEVYLDQNVPDCH 263 >A9IP27.1 A9IP27_BORPD ABC transporter, substrate binding protein Length = 287 Score = 171 bits (434), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 95/255 (37%), Positives = 138/255 (54%), Gaps = 16/255 (6%) Query: 34 ARTRGAVRIGQNYVPPAYTAGAKFRTPEGVDVILAEDIAKRLNL--RLDSVRNTNNAGTG 91 AR RG + +G Y+ P AGAK RTPE +D +LAE + +RL L ++ V A Sbjct: 43 ARERGVLVVGVPYLAPPAAAGAKVRTPERLDTVLAERLGERLGLPVKVVQVEPQQRAAAL 102 Query: 92 DDGKAVQALKGARPDIALVTVEEGAARSGTAADGSVLIPTGYSAGAMAIMRTDTDIRKWE 151 DG D+ L G + +G L+P GY A A++R+DT +R+W Sbjct: 103 ADGTV---------DLLLADRIAGQSDAGLDDPNVALVPAGYQARPKAVIRSDTALRRWS 153 Query: 152 QLKGRTVCLSEGGSYVGQMTARYGAVEKVMRAPADSLLAVRIGQCDAAVHDDTMLKELLK 211 Q+KGR+VC+S + A +GA + R P+D+L+AVR G CD + DD L++ Sbjct: 154 QVKGRSVCMSSAAFQAQALAAHWGATVRTFRVPSDALVAVREGACDIGLIDDAAWGPLMQ 213 Query: 212 LPEWKKFSAQLP---PQSRSMLMVKVPVADGAAIAYFRQTVAEWSRGDFWTAQKKKWSNT 268 PEWKKFSA LP P + + + + D A++ + + +W + W A +KW+ Sbjct: 214 FPEWKKFSATLPADGPVAERVWLAR--AGDEASVRWLAAAMQQWRQQGAWQAMVRKWARD 271 Query: 269 VAFEVYLDQNVPDCH 283 VAF+VYLDQ VPDCH Sbjct: 272 VAFDVYLDQEVPDCH 286 >E3HJ01.1 E3HJ01_ACHXA ABC transporter, substrate binding protein 2 Length = 268 Score = 158 bits (399), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 95/282 (33%), Positives = 148/282 (52%), Gaps = 22/282 (7%) Query: 9 LLLRLSAFVL----AVSAFTGAQAGVLDDARTRGAVRIGQNYVPPAYTAGAKFRTPEGVD 64 ++ R+ FVL A S AQ AR RG + +G ++ P AGAK RTP+G+D Sbjct: 1 MIGRIRLFVLGACLAASGLAQAQPEAFAAARARGELVVGVPFLAPPPAAGAKIRTPDGLD 60 Query: 65 VILAEDIAKRLNL--RLDSVRNTNNAGTGDDGKAVQALKGARPDIALVTVEEGAARSGTA 122 + + + + L L RL + A G+ + LV + +A+ Sbjct: 61 AAMTDRVGQSLGLPVRLVQLPQEQAAAALAAGQ-----------VDLVLTDGASAQPDAV 109 Query: 123 ADGSVLIPTGYSAGAMAIMRTDTDIRKWEQLKGRTVCLSEGGSYVGQMTARYGAVEKVMR 182 A + TGY+A A++R+DT +R+ ++GR+VC++E + + +GAV + R Sbjct: 110 ATQA----TGYAARPKAVIRSDTSLRRPADVRGRSVCMAEAATASRALAESWGAVVRTYR 165 Query: 183 APADSLLAVRIGQCDAAVHDDTMLKELLKLPEWKKFSAQLPPQ-SRSMLMVKVPVADGAA 241 P+D+L+AVR G CD + DD + + L++ PEWKKFS+ L +R + +P +D A+ Sbjct: 166 VPSDALVAVREGSCDIGLVDDAVWEPLVRFPEWKKFSSTLAADGARRERVWLLPASDSAS 225 Query: 242 IAYFRQTVAEWSRGDFWTAQKKKWSNTVAFEVYLDQNVPDCH 283 + Q + W R W A KW+ VAF+VYLDQ VPDCH Sbjct: 226 RNWLSQEMRAWDRAGAWKAMTAKWARDVAFDVYLDQEVPDCH 267 >D4XDW3.1 D4XDW3_9BURK Putative uncharacterized protein Length = 273 Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 99/254 (38%), Positives = 140/254 (55%), Gaps = 20/254 (7%) Query: 34 ARTRGAVRIGQNYVPPAYTAGAKFRTPEGVDVILAEDIAKRLNL--RLDSVRNTNNAGTG 91 AR RG + +G Y+ P AGAK RTP+G+D +AE + L L RL VR G Sbjct: 35 ARERGELVVGVPYLAPPPVAGAKIRTPDGLDANMAEKLGASLGLPVRLRQVRAEE---AG 91 Query: 92 DDGKAVQALKGARPDIALVTVEEGAARSGTAADGSVLI-PTGYSAGAMAIMRTDTDIRKW 150 D L + D+ L A + T +V + PTGYS A++R+DT +RK Sbjct: 92 D------LLSAGQVDVVL-------ADAATGQPATVAVQPTGYSTRPKAMIRSDTRLRKP 138 Query: 151 EQLKGRTVCLSEGGSYVGQMTARYGAVEKVMRAPADSLLAVRIGQCDAAVHDDTMLKELL 210 ++GR+VC++E + + A +GAV + R P+D+L+AVR G CD + DD++ + L+ Sbjct: 139 ADVQGRSVCMAEADTDARALAAAWGAVVRTYRVPSDALVAVREGACDVGLVDDSVWEPLV 198 Query: 211 KLPEWKKFSAQLPPQSRSMLMV-KVPVADGAAIAYFRQTVAEWSRGDFWTAQKKKWSNTV 269 + PEWKKFSA LP V +P +D A A+ + WS+ W A KW+ V Sbjct: 199 RFPEWKKFSATLPADGAKREQVWLLPASDAAGRAWLAGEMQAWSQSGAWKAMTSKWARDV 258 Query: 270 AFEVYLDQNVPDCH 283 AF+VYLDQ VPDCH Sbjct: 259 AFDVYLDQEVPDCH 272 >Q7WI29.1 Q7WI29_BORBR Putative substrate-binding protein Length = 285 Score = 152 bits (384), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 96/247 (38%), Positives = 134/247 (54%), Gaps = 10/247 (4%) Query: 37 RGAVRIGQNYVPPAYTAGAKFRTPEGVDVILAEDIAKRLNLRLDSVRNTNNAGTGDDGKA 96 RG + +G ++ A AGAK RTPE +D + AE +A++L L L R A Sbjct: 48 RGVLVVGVPFLADAPLAGAKVRTPERLDGVAAERLARQLGLPLQLRRLAAGD------AA 101 Query: 97 VQALKGARPDIALVTVEEGAARSGTAADGSVLIPTGYSAGAMAIMRTDTDIRKWEQLKGR 156 Q GA D+ L +GA + A G ++ TGY+ A++R DT +R+W+ + G Sbjct: 102 AQLASGAV-DLVLADRRDGAPLAAQAP-GMAVVGTGYATAPKAVIRGDTALRRWQDVAGH 159 Query: 157 TVCLSEGGSYVGQMTARYGAVEKVMRAPADSLLAVRIGQCDAAVHDDTMLKELLKLPEWK 216 +VC+++ + R+GA + RAP+D+L+AVR G CD A+ DD + L+K PEWK Sbjct: 160 SVCMADAAQGAQALAQRHGATVRTYRAPSDALVAVREGACDLALIDDAVWAPLMKFPEWK 219 Query: 217 KFSAQLPPQSRSMLMVKVPVADGAAIAYFRQTVAEWSRGDFWTAQKKKWSNTVAFEVYLD 276 KFSA L PQ +V V AA + W R WTA KW+ VAF+VYLD Sbjct: 220 KFSATLAPQGPRAELVWVAAPADAAWLAAQMQA--WRREGAWTAMTAKWARDVAFDVYLD 277 Query: 277 QNVPDCH 283 Q VPDCH Sbjct: 278 QEVPDCH 284