BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0017.p (372 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value E1MRZ3.1 E1MRZ3_9GAMM Integrase catalytic region 427 e-117 E1T3X8.1 E1T3X8_BURSG Integrase catalytic region 279 5e-73 A0YQI4.1 A0YQI4_LYNSP Putative transposase 162 8e-38 E1MS14.1 E1MS14_9GAMM Integrase catalytic region 158 2e-36 Q6LTI6.1 Q6LTI6_PHOPR Putative transposase 143 4e-32 >E1MRZ3.1 E1MRZ3_9GAMM Integrase catalytic region Length = 667 Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust. Identities = 210/352 (59%), Positives = 267/352 (75%), Gaps = 3/352 (0%) Query: 1 MPGFILQKNTAFEWAGSLCRIDRLQPNGEVLIEYVNEGHLTIVSKKQLLVEYSEGRIVAK 60 M GF L KN F+W G+ RIDR+QPNGE+L+E +++GHL+IVS++ LLVEY EG+I AK Sbjct: 1 MAGFALHKNMVFDWNGAEYRIDRIQPNGELLLERISDGHLSIVSRELLLVEYREGKISAK 60 Query: 61 NVR--SDEILERHIFSRPLDELPPEILNAATRRLHYVKAILEHGSPVFTREYLQPLIELA 118 S++ L FSRPL+EL I A RR HY+ ILEHG PVFT +YL+PLIELA Sbjct: 61 TAEPYSNKSLV-PTFSRPLNELSEGIRKAVNRRKHYLDIILEHGVPVFTPDYLRPLIELA 119 Query: 119 AKQIDDENLPSVTSIYRWCTKYKNGRDIRALIPRFDRRGSRKLKQADTVLQLALASVEEA 178 A +I+D N P V ++YRW ++K D RA+IPR D RG +KL+Q D +LQL ++EEA Sbjct: 120 AAKIEDINPPGVITVYRWYRRFKLSSDPRAIIPRTDLRGPKKLRQNDYILQLVAEALEEA 179 Query: 179 FAASPKATIPNIYTRLLGKIESENRLLSMSAHLKSPCLRTLYRMFDRLEAYDRVCFRDGK 238 F ASP+AT N+YTRLLGKI+ EN+ + +K P LRTLYR+ R EAY+ V ++GK Sbjct: 180 FKASPQATCRNVYTRLLGKIKIENQRTLGTEPIKPPSLRTLYRLIARAEAYETVVLKEGK 239 Query: 239 LAADKKFRLVKSGVVTTQILERVEIDHTPLDLFLVDERTWLPLGRPTLTVIIDHYSRMLL 298 AAD++FR+ K GV T++ILERVEIDHTPLDLFL+DERTWLPLGRPTLT++IDHYSRMLL Sbjct: 240 AAADRRFRIGKVGVKTSRILERVEIDHTPLDLFLIDERTWLPLGRPTLTIVIDHYSRMLL 299 Query: 299 GFYLSYGSPSAQAVMGALRHAILPKCPAKMVLPHLNVQHAWPCYGRPDVIVV 350 G+YLS+ SPS AVMG+LRHAILPK A V+P+L ++ WPCYGRP+V+VV Sbjct: 300 GYYLSFDSPSTAAVMGSLRHAILPKNSAAAVMPNLKTENTWPCYGRPEVMVV 351 >E1T3X8.1 E1T3X8_BURSG Integrase catalytic region Length = 653 Score = 279 bits (714), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 150/352 (42%), Positives = 216/352 (61%), Gaps = 2/352 (0%) Query: 1 MPGFILQKNTAFEWAGSLCRIDRLQPNGEVLIEYVNEGHLTIVSKKQLLVEYSEGRIVAK 60 M GF L++ AFE+ G +I R+ +G V +E L+ +++QLL Y +GRIV Sbjct: 1 MSGFRLRRGMAFEFDGIAVQIHRIWDDGTVTLEQRGTMKLSQTTERQLLDAYRDGRIVVS 60 Query: 61 N-VRSDEILERHIFS-RPLDELPPEILNAATRRLHYVKAILEHGSPVFTREYLQPLIELA 118 + +R + +R + + RP + E+ A RR Y+ A+ G PVFT L+P I A Sbjct: 61 DPLRHERSSDRLMAAGRPFSDFSHELQQEAIRRKSYLDALSLSGPPVFTPSILRPAIRCA 120 Query: 119 AKQIDDENLPSVTSIYRWCTKYKNGRDIRALIPRFDRRGSRKLKQADTVLQLALASVEEA 178 A DE PS +SIYRW ++ +DIR+L+PR RG R + + +++L + S+ E Sbjct: 121 ALSRGDEKTPSPSSIYRWWKAFERTQDIRSLLPRNSARGPRGPRTSAAIIELYIESLTET 180 Query: 179 FAASPKATIPNIYTRLLGKIESENRLLSMSAHLKSPCLRTLYRMFDRLEAYDRVCFRDGK 238 P+ ++ + RL K+E EN + S + L P +RTL R+F RL YD DG Sbjct: 181 SKLLPRLSLQDAQIRLKQKLERENCMRSSADRLSMPSMRTLQRLFRRLSEYDVAVLCDGV 240 Query: 239 LAADKKFRLVKSGVVTTQILERVEIDHTPLDLFLVDERTWLPLGRPTLTVIIDHYSRMLL 298 AA++ +R+ KSGV T+ILERVE+DHTP DLF++D +T LP GRPTLT++ID YSRM+L Sbjct: 241 DAANRTYRITKSGVPVTRILERVEVDHTPQDLFVIDGKTGLPCGRPTLTILIDVYSRMVL 300 Query: 299 GFYLSYGSPSAQAVMGALRHAILPKCPAKMVLPHLNVQHAWPCYGRPDVIVV 350 G+Y+S+ S +VM ALRHAILPK P V+P + V H+W CYGRP+V+V Sbjct: 301 GYYVSFNDTSTLSVMRALRHAILPKTPTPAVVPGIVVLHSWVCYGRPEVLVT 352 >A0YQI4.1 A0YQI4_LYNSP Putative transposase Length = 791 Score = 162 bits (410), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 96/283 (33%), Positives = 151/283 (53%), Gaps = 7/283 (2%) Query: 77 LDELPPEILNAATRRLHYVKAILEHGSPVFTREYLQPLIELAAKQIDDENLPSVTSIYRW 136 E+ P + A++RL YV+ LE T E L+P+IE +++I D + P S+YRW Sbjct: 78 FSEIDPRLKQEASKRLKYVERFLEKDIQNLTPETLKPIIEEVSQEISDNSPPGWYSLYRW 137 Query: 137 CTKYKNG-RDIRALIPRFDRRGSRKLKQADTVLQLALASVEEAFAASPKATIPNIYTRLL 195 +Y+ G DIR+L+ + +G+RK + D + Q+ +E + + K TI + + + Sbjct: 138 IKRYEEGGYDIRSLVSKTQAKGNRKSRLPDEIYQIINEVKDELYLSKTKPTIADAVSEIR 197 Query: 196 GKIESENRLLSMSAHLKS---PCLRTLYRMFDRLEAYDRVCFRDGKLAADKKFRLV-KSG 251 +I EN S LK P T+YR++ +++ Y+ R GK AD+ + + K Sbjct: 198 YRITQENYRRSQIGTLKPLKIPHESTIYRIYSQIDPYEEAVGRYGKRTADRMYDMSGKEP 257 Query: 252 VVTTQILERVEIDHTPLDLFLVDERTWLPLGRPTLTVIIDHYSRMLLGFYLSYGSPSAQA 311 + + L+ VEIDHTPL ++VD T LP+GRP L +ID Y+++ G+ LS+ S + Sbjct: 258 IRPQRPLQIVEIDHTPLPFYVVDSETRLPIGRPNLVTVIDKYTQIPCGYDLSFDPESGLS 317 Query: 312 VMGALRHAILPKCPAKMVLPHLNVQHAWPCYGRPDVIVVGMXG 354 VM L HAI PK P NV + W YG ++I V G Sbjct: 318 VMRCLNHAIRPKNYVSEQYP--NVSNTWDTYGLMEMIRVDNAG 358 >E1MS14.1 E1MS14_9GAMM Integrase catalytic region Length = 631 Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 110/327 (33%), Positives = 166/327 (50%), Gaps = 8/327 (2%) Query: 20 RIDRLQPNGEVLIEYVNEGHLTIVSKKQLLVEYSEGRIV--AKNVRSDEILERHIFSRPL 77 R+ R+ +G+ +E ++ L+ SK++LL S G ++ + + L Sbjct: 4 RLIRILEDGQCQLERKSDLALSSYSKQELLGFMSTGELILCGQQTVTTTSENNQRLESDL 63 Query: 78 DELPPEILNAATRRLHYVKAILEHGSPVFTREYLQPLIELAAKQIDDENLPSVTSIYRWC 137 P I RL Y+K E T L +I+L A++ ++ + PS ++YRW Sbjct: 64 STYPEAIQQQVYYRLKYLKKADELLGEEITCHRLSRVIKLVAEESNNSDPPSALTVYRWW 123 Query: 138 TKY-KNGRDIRALIPRFDRRGSRKLKQADTVLQLALASVEEAFAASPKATIPNIYTRLLG 196 + K R I ALI ++ + K K + QLA ++E + S +I ++Y L Sbjct: 124 KLWIKADRSITALI-KYKKGPKNKRKIVKELEQLAQQLIDEIYLKSEGGSIQDVYDALKH 182 Query: 197 KIESENRLLSMSAHLKSPCLRTLYRMFDRLEAYDRVCFRDGKLAADKKFRLVKSGVVTTQ 256 KI++ N ++ + L P T YR + + Y + R GK AAD+ FR G Sbjct: 183 KIKALN--INRNTPLPIPGKATFYRYVETYDEYLVMAARKGKQAADRHFRAAGKGPEPKY 240 Query: 257 ILERVEIDHTPLDLFLVDERTWLPLGRPTLTVIIDHYSRMLLGFYLSYGSPSAQAVMGAL 316 ILER E+DHTPLDL ++D+ T L +GRPT+T IID YSR+ LGF + + PS AVM AL Sbjct: 241 ILERAEVDHTPLDLLIIDDVTGLTIGRPTVTFIIDRYSRLPLGFEIGFEPPSELAVMRAL 300 Query: 317 RHAILPKCPAKMVLPHLNVQHAWPCYG 343 RHAI+PK P V++ W YG Sbjct: 301 RHAIMPKTYVSQEYPE--VENEWLAYG 325 >Q6LTI6.1 Q6LTI6_PHOPR Putative transposase Length = 576 Score = 143 bits (361), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 92/278 (33%), Positives = 150/278 (53%), Gaps = 11/278 (3%) Query: 88 ATRRLHYVKAILEHGSPVFTREYLQPLIELAAKQIDDENLPSVTSIYRWCTKYKN-GRDI 146 A RL +K ++ +T++ L+PL+ L A+ +E LP+ + RW + Y++ G I Sbjct: 52 AIFRLKLIKFLVRRIYGGWTQKNLEPLL-LEAQSTFNEKLPNWRTAARWFSCYRSTGYSI 110 Query: 147 RALIPRFDRRGSRKLKQADTVLQLALASVEEAFAASPKATIPNIYTRLLGKIESENRLLS 206 +LIP+ +RGSR +K+ ++ LA ++E + + ++ + Y I++ N Sbjct: 111 ESLIPKHHKRGSRAIKKTNSERFYNLA-LDEKYLTHERPSVADAYQFYCDLIDNYNS--G 167 Query: 207 MSAHLKSPCLRTLYRMFDRLEAYDRVCFRDGKLAADKKFRLVKSGVVTTQILERVEIDHT 266 +K RT Y +RL YD R GK ++K+R + +++LERVEIDHT Sbjct: 168 KERKVKPISKRTFYNRINRLPPYDVDLARYGKEYTERKYRTIGRFPRPSRVLERVEIDHT 227 Query: 267 PLDLFLVDERTWLPLGRPTLTVIIDHYSRMLLGFYLSYGSPSAQAVMGALRHAILPKCPA 326 PLDL LVD+ LP+GRP LT++ID YS+ +LGFY+ + PS +V AL + L K Sbjct: 228 PLDLMLVDDELLLPIGRPYLTLLIDVYSKCVLGFYIGFNEPSYDSVRRALTVSCLSKSWV 287 Query: 327 KMVLPHLNVQHAWPCYGRPDVIVVGMXGGGGTTVWNST 364 P ++++ WPC G+ +VV G W+ + Sbjct: 288 NTKYP--DIKNEWPCEGKIRELVV----DNGAEFWSKS 319