BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0013.p (351 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8ITP1.1 D8ITP1_HERSS DNA polymerase III subunit beta protein EC... 681 0.0 A6STW3.1 A6STW3_JANMA DNA polymerase III beta subunit EC=2.7.7.7 671 0.0 A4G155.1 A4G155_HERAR DNA polymerase III, beta subunit EC=2.7.7.7 662 0.0 F1VVH8.1 F1VVH8_9BURK DNA polymerase III beta subunit 644 0.0 C3X5W2.1 C3X5W2_OXAFO DNA polymerase III subunit beta 543 e-152 >D8ITP1.1 D8ITP1_HERSS DNA polymerase III subunit beta protein EC=2.7.7.7 Length = 368 Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/351 (93%), Positives = 345/351 (98%) Query: 1 VSGIVERRHTLPILANILIRKDGEKVSFLSTDIEVQITTHAEVGSGSEVTATTVAARKLL 60 VSGIVERRHTLPILANILIRKDGEKVSFLSTDIEVQITTHA+VGSGSE TATTVAARKLL Sbjct: 18 VSGIVERRHTLPILANILIRKDGEKVSFLSTDIEVQITTHADVGSGSEATATTVAARKLL 77 Query: 61 DILRALPDSGEVTVTLSNKRLTVQSGKSRFALQTLAAEEFPTVAQAEHYNAQVTLPQKTL 120 DILRALPDSGEV+++LSNKRLTVQSGKSRFALQTLAAEEFPTVAQAEHYNAQV LPQKTL Sbjct: 78 DILRALPDSGEVSISLSNKRLTVQSGKSRFALQTLAAEEFPTVAQAEHYNAQVNLPQKTL 137 Query: 121 KHLFNMVHFSMAQQDIRYYLNGLLLVVEGKNVIAVATDGHRLAFCQVATEQEFPRQEVII 180 KHLFNMVHF+MAQQDIRYYLNGLLLVVEGKNVIAVATDGHRLAFCQV TE++FPRQEVII Sbjct: 138 KHLFNMVHFAMAQQDIRYYLNGLLLVVEGKNVIAVATDGHRLAFCQVETEEDFPRQEVII 197 Query: 181 PRKTIIELQRLLEENDDPVQLEIANNQVKLTFADIELISKLVEGKFPDYTRVVPKGYKNN 240 PRKTIIELQRLL+++D+ VQL+IANNQVKLTFADIELISKLVEGKFPDYTRVVPKGYKN+ Sbjct: 198 PRKTIIELQRLLDDSDEEVQLQIANNQVKLTFADIELISKLVEGKFPDYTRVVPKGYKNS 257 Query: 241 FTIGREQLLRSLQRAAIMTSDKFKGVRWVIAPGSLKISSTNADQEEAVEELEIDYGGDSV 300 FTI R+QLLRSLQRAAIMTSDKFKGVRWVIAPGSLKISSTNADQEEAVEELEIDYGGD+V Sbjct: 258 FTISRDQLLRSLQRAAIMTSDKFKGVRWVIAPGSLKISSTNADQEEAVEELEIDYGGDTV 317 Query: 301 DIGFNVTYLLDVLNNLKGDFVNIALGDANSSALITIPDNADFKYVVMPMRI 351 DIGFNV+YLLDVLNNLK D+VNIALGDANSSALITIPDNADFKYVVMPMRI Sbjct: 318 DIGFNVSYLLDVLNNLKNDYVNIALGDANSSALITIPDNADFKYVVMPMRI 368 >A6STW3.1 A6STW3_JANMA DNA polymerase III beta subunit EC=2.7.7.7 Length = 368 Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust. Identities = 322/351 (91%), Positives = 342/351 (97%) Query: 1 VSGIVERRHTLPILANILIRKDGEKVSFLSTDIEVQITTHAEVGSGSEVTATTVAARKLL 60 VSGIVERRHTLPILANILIRKDGE+VSFLSTDIEVQITTHA+VGSG++V +TTVAARKLL Sbjct: 18 VSGIVERRHTLPILANILIRKDGERVSFLSTDIEVQITTHAQVGSGNDVASTTVAARKLL 77 Query: 61 DILRALPDSGEVTVTLSNKRLTVQSGKSRFALQTLAAEEFPTVAQAEHYNAQVTLPQKTL 120 DILRALPDSG+V++TL+NKR+TVQSGKSRFALQTLAAEEFPTVAQAE YNA+VTLPQKTL Sbjct: 78 DILRALPDSGDVSLTLANKRMTVQSGKSRFALQTLAAEEFPTVAQAEQYNAKVTLPQKTL 137 Query: 121 KHLFNMVHFSMAQQDIRYYLNGLLLVVEGKNVIAVATDGHRLAFCQVATEQEFPRQEVII 180 KHLFNMVHFSMAQQDIRYYLNGLLLVV+GKNVIAVATDGHRLAFCQVATEQEFPRQEVII Sbjct: 138 KHLFNMVHFSMAQQDIRYYLNGLLLVVDGKNVIAVATDGHRLAFCQVATEQEFPRQEVII 197 Query: 181 PRKTIIELQRLLEENDDPVQLEIANNQVKLTFADIELISKLVEGKFPDYTRVVPKGYKNN 240 PRKTIIELQRLLEEND PV LEIANNQVKLTF DIELISKLVEGKFPDYTRVVPKGYKNN Sbjct: 198 PRKTIIELQRLLEENDQPVDLEIANNQVKLTFGDIELISKLVEGKFPDYTRVVPKGYKNN 257 Query: 241 FTIGREQLLRSLQRAAIMTSDKFKGVRWVIAPGSLKISSTNADQEEAVEELEIDYGGDSV 300 FTIGR+ LLRSLQRAAIMTSDKFKGVR +++PGS+KISSTNADQEEAVEE+EIDYGGDSV Sbjct: 258 FTIGRDALLRSLQRAAIMTSDKFKGVRCIMSPGSMKISSTNADQEEAVEEIEIDYGGDSV 317 Query: 301 DIGFNVTYLLDVLNNLKGDFVNIALGDANSSALITIPDNADFKYVVMPMRI 351 DIGFNVTYLLDVLNNLKGD +NIALGDANSSALIT+PDN DFKYVVMPMRI Sbjct: 318 DIGFNVTYLLDVLNNLKGDSINIALGDANSSALITVPDNPDFKYVVMPMRI 368 >A4G155.1 A4G155_HERAR DNA polymerase III, beta subunit EC=2.7.7.7 Length = 368 Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust. Identities = 318/351 (90%), Positives = 340/351 (96%) Query: 1 VSGIVERRHTLPILANILIRKDGEKVSFLSTDIEVQITTHAEVGSGSEVTATTVAARKLL 60 VSGIVERRHTLPILANILIRKDGE+VSFLSTDIEVQITTHA+VGSG+E+ +TTVAARKLL Sbjct: 18 VSGIVERRHTLPILANILIRKDGERVSFLSTDIEVQITTHAQVGSGNEIASTTVAARKLL 77 Query: 61 DILRALPDSGEVTVTLSNKRLTVQSGKSRFALQTLAAEEFPTVAQAEHYNAQVTLPQKTL 120 DILRALPDSG+V++TL+NKR+TVQSGKSRFALQTLAAEEFPTVAQAE YNA+VTLPQKTL Sbjct: 78 DILRALPDSGDVSLTLANKRMTVQSGKSRFALQTLAAEEFPTVAQAEQYNAKVTLPQKTL 137 Query: 121 KHLFNMVHFSMAQQDIRYYLNGLLLVVEGKNVIAVATDGHRLAFCQVATEQEFPRQEVII 180 KHLFNMVHFSMAQQDIRYYLNGLLLVV+GKNVIAVATDGHRLAFCQVATEQEF RQEVII Sbjct: 138 KHLFNMVHFSMAQQDIRYYLNGLLLVVDGKNVIAVATDGHRLAFCQVATEQEFARQEVII 197 Query: 181 PRKTIIELQRLLEENDDPVQLEIANNQVKLTFADIELISKLVEGKFPDYTRVVPKGYKNN 240 PRKTIIELQRLLE+ D PV LEIAN+QVKLTF DIELISKLVEGKFPDYTRVVPKGYKNN Sbjct: 198 PRKTIIELQRLLEDTDQPVDLEIANSQVKLTFGDIELISKLVEGKFPDYTRVVPKGYKNN 257 Query: 241 FTIGREQLLRSLQRAAIMTSDKFKGVRWVIAPGSLKISSTNADQEEAVEELEIDYGGDSV 300 FTIGR+ LLRSLQRAAIMTSDKFKGVR +++PGS+KISSTNADQEEAVEE+EIDYGGDSV Sbjct: 258 FTIGRDALLRSLQRAAIMTSDKFKGVRCIMSPGSMKISSTNADQEEAVEEIEIDYGGDSV 317 Query: 301 DIGFNVTYLLDVLNNLKGDFVNIALGDANSSALITIPDNADFKYVVMPMRI 351 DIGFNVTYLLDVLNNLKGD +NIALGDANSSALIT+PDN DFKYVVMPMRI Sbjct: 318 DIGFNVTYLLDVLNNLKGDNINIALGDANSSALITVPDNPDFKYVVMPMRI 368 >F1VVH8.1 F1VVH8_9BURK DNA polymerase III beta subunit Length = 351 Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust. Identities = 310/351 (88%), Positives = 335/351 (95%) Query: 1 VSGIVERRHTLPILANILIRKDGEKVSFLSTDIEVQITTHAEVGSGSEVTATTVAARKLL 60 +SGIVERRHTLPILANILIRKDG+KVSFLSTDIEVQITTH V G E+ ATTVAARKLL Sbjct: 1 MSGIVERRHTLPILANILIRKDGDKVSFLSTDIEVQITTHITVDGGEELAATTVAARKLL 60 Query: 61 DILRALPDSGEVTVTLSNKRLTVQSGKSRFALQTLAAEEFPTVAQAEHYNAQVTLPQKTL 120 DILRALP+SG+V++TL+NKR+TVQSGKSRFALQTLAAEEFPTV QAEHY+AQ++LPQKTL Sbjct: 61 DILRALPESGDVSLTLANKRMTVQSGKSRFALQTLAAEEFPTVTQAEHYSAQLSLPQKTL 120 Query: 121 KHLFNMVHFSMAQQDIRYYLNGLLLVVEGKNVIAVATDGHRLAFCQVATEQEFPRQEVII 180 KHLFNMVHFSMAQQDIRYYLNGLLLVV+GKNVIAVATDGHRLAFCQV TEQEF RQEVII Sbjct: 121 KHLFNMVHFSMAQQDIRYYLNGLLLVVDGKNVIAVATDGHRLAFCQVETEQEFTRQEVII 180 Query: 181 PRKTIIELQRLLEENDDPVQLEIANNQVKLTFADIELISKLVEGKFPDYTRVVPKGYKNN 240 PRKTIIELQRLLE+ D+ VQ++IA NQVKLTFADIELISKLVEGKFPDYTRVVPKGYKNN Sbjct: 181 PRKTIIELQRLLEDTDELVQIDIAPNQVKLTFADIELISKLVEGKFPDYTRVVPKGYKNN 240 Query: 241 FTIGREQLLRSLQRAAIMTSDKFKGVRWVIAPGSLKISSTNADQEEAVEELEIDYGGDSV 300 FT+GR+QLLRSLQRAAIMTSDKFKGVR ++ PGS+K+SSTNADQEE+VEE+EIDYGGDSV Sbjct: 241 FTLGRDQLLRSLQRAAIMTSDKFKGVRCIVTPGSMKVSSTNADQEESVEEIEIDYGGDSV 300 Query: 301 DIGFNVTYLLDVLNNLKGDFVNIALGDANSSALITIPDNADFKYVVMPMRI 351 DIGFNVTYLLDVLNNLK D VNIALGDANSSALITIPDNADFKYVVMPMRI Sbjct: 301 DIGFNVTYLLDVLNNLKCDQVNIALGDANSSALITIPDNADFKYVVMPMRI 351 >C3X5W2.1 C3X5W2_OXAFO DNA polymerase III subunit beta Length = 368 Score = 543 bits (1398), Expect = e-152, Method: Compositional matrix adjust. Identities = 256/351 (72%), Positives = 301/351 (85%) Query: 1 VSGIVERRHTLPILANILIRKDGEKVSFLSTDIEVQITTHAEVGSGSEVTATTVAARKLL 60 VSGIVERRHTLPILANILIRK+G VSFLSTD E+QI THAE+G+ E TTVAARKLL Sbjct: 18 VSGIVERRHTLPILANILIRKEGNAVSFLSTDTEIQIVTHAEIGTAEEDATTTVAARKLL 77 Query: 61 DILRALPDSGEVTVTLSNKRLTVQSGKSRFALQTLAAEEFPTVAQAEHYNAQVTLPQKTL 120 DILRALPDS E+ ++L++KRL V +GKSRF+LQTL A +FPTV+Q Y VTL QK+L Sbjct: 78 DILRALPDSAEIAISLNDKRLVVSAGKSRFSLQTLPAADFPTVSQPLEYQTSVTLSQKSL 137 Query: 121 KHLFNMVHFSMAQQDIRYYLNGLLLVVEGKNVIAVATDGHRLAFCQVATEQEFPRQEVII 180 K+L MV+F+MAQQDIRYYLNGLLL G + AVATDGHRLAFCQ+ TEQEF +VII Sbjct: 138 KNLLGMVYFAMAQQDIRYYLNGLLLQTGGNTIKAVATDGHRLAFCQMETEQEFSNNDVII 197 Query: 181 PRKTIIELQRLLEENDDPVQLEIANNQVKLTFADIELISKLVEGKFPDYTRVVPKGYKNN 240 PRKTI+ELQRLLEE+++PV+++I+ QV+ F D+ELISKLVEGKFPDYTRV+PKGYKN Sbjct: 198 PRKTILELQRLLEESEEPVRIDISGAQVRFVFGDVELISKLVEGKFPDYTRVIPKGYKNK 257 Query: 241 FTIGREQLLRSLQRAAIMTSDKFKGVRWVIAPGSLKISSTNADQEEAVEELEIDYGGDSV 300 FTI RE L R+LQRAAIMTSDKFKG+R ++APGSLKISSTNADQEEA+EE+E+DY GD++ Sbjct: 258 FTISRELLQRALQRAAIMTSDKFKGIRCILAPGSLKISSTNADQEEAIEEIELDYDGDNI 317 Query: 301 DIGFNVTYLLDVLNNLKGDFVNIALGDANSSALITIPDNADFKYVVMPMRI 351 DIGFNVTYLLDVL NLK D ++I LGDANSSAL+++PDN DFKYVVMPMRI Sbjct: 318 DIGFNVTYLLDVLGNLKNDEISIELGDANSSALMSVPDNTDFKYVVMPMRI 368