BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0011.p (476 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8ITP0.1 D8ITP0_HERSS Chromosomal replication initiator protein ... 820 0.0 A4G154.1 DNAA_HERAR Chromosomal replication initiator protein DnaA 818 0.0 A6STW2.1 DNAA_JANMA Chromosomal replication initiator protein DnaA 812 0.0 F1VVH7.1 F1VVH7_9BURK Chromosomal replication initiator protein ... 811 0.0 C3XC41.1 C3XC41_OXAFO Chromosomal replication initiator protein ... 761 0.0 >D8ITP0.1 D8ITP0_HERSS Chromosomal replication initiator protein DnaA Length = 465 Score = 820 bits (2119), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/476 (87%), Positives = 424/476 (89%), Gaps = 11/476 (2%) Query: 1 MENFWQACSAKLEQELTPQQYSAWIKPLAPLDYEDGRLRIAAPNRFKLDWVKTQFAGRIT 60 MENFWQACS KLEQELTPQQYSAWIKPL PLDYEDG LR+AAPNRFKLDWVKTQFA RIT Sbjct: 1 MENFWQACSQKLEQELTPQQYSAWIKPLVPLDYEDGLLRVAAPNRFKLDWVKTQFANRIT 60 Query: 61 TIASEYWETQIEVQFVLDPRVGEARRAAAAAAPQGAGQGAGPGQPNRVGSMLDGYPTGIQ 120 +A EYW+ EVQFVLDPR + RR AAAAA G G PN LD P Sbjct: 61 ALACEYWDAPTEVQFVLDPRGNQGRRPAAAAAAGNGASGLG--LPNHEQLHLDPEPA--- 115 Query: 121 ESLVQPAPPPHVAPRQELSRINSVLTFDNLVTGKANQLARAAATQVANNPGVSYNPLFLY 180 P VAPRQE SRIN VLTFDNLVTGKANQLARAAATQVANNPG SYNPLFLY Sbjct: 116 ------QPVRAVAPRQEQSRINPVLTFDNLVTGKANQLARAAATQVANNPGTSYNPLFLY 169 Query: 181 GGVGLGKTHVIHAIGNQVLADNPNAKIRYIHAEQYVRDVVTAYQRKGFDDFKRYYHSLDL 240 GGVGLGKTH+IHAIGNQVL DNP AKIRYIHAEQYVRDVVTAYQRKGFDDFKRYYHSLDL Sbjct: 170 GGVGLGKTHIIHAIGNQVLVDNPGAKIRYIHAEQYVRDVVTAYQRKGFDDFKRYYHSLDL 229 Query: 241 LLIDDIQFFGGKSRTQEEFFYAFEALIAAKKQIIITSDTYPKEISGMDDRLISRFDSGLT 300 LLIDDIQFFGGKSRTQEEFFYAFEALIAAKKQIIITSDTYPKEISGMDDRLISRFDSGLT Sbjct: 230 LLIDDIQFFGGKSRTQEEFFYAFEALIAAKKQIIITSDTYPKEISGMDDRLISRFDSGLT 289 Query: 301 VAIEPPELEMRVAILMKKATLEGVVLSDDVAFFVAKHLRSNVRELEGALRKILAYSRFHG 360 VAIEPPELEMRVAILMKKA+ E VVLSDDVAFFVAKHLRSNVRELEGALRKILAYSRFHG Sbjct: 290 VAIEPPELEMRVAILMKKASAEDVVLSDDVAFFVAKHLRSNVRELEGALRKILAYSRFHG 349 Query: 361 KDITIDVVKDALKDLLSVQNRQISVENIQKTVADFFNIKVADMYSKKRPANIARPRQIAM 420 KDITIDVVK+ALKDLLSVQNRQISVENIQKTVADFFNIKVADMYSKKRPANIARPRQIAM Sbjct: 350 KDITIDVVKEALKDLLSVQNRQISVENIQKTVADFFNIKVADMYSKKRPANIARPRQIAM 409 Query: 421 YLAKELTQKSLPEIGDLFGGRDHTTVLHAVRKISADRTKNPECNHELHVLEQTLKG 476 YLAKELTQKSLPEIGDLFGGRDHTTVLHAVRKI+ADR K+PECNHELHVLEQTLKG Sbjct: 410 YLAKELTQKSLPEIGDLFGGRDHTTVLHAVRKIAADRAKSPECNHELHVLEQTLKG 465 >A4G154.1 DNAA_HERAR Chromosomal replication initiator protein DnaA Length = 460 Score = 818 bits (2114), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/476 (84%), Positives = 424/476 (89%), Gaps = 16/476 (3%) Query: 1 MENFWQACSAKLEQELTPQQYSAWIKPLAPLDYEDGRLRIAAPNRFKLDWVKTQFAGRIT 60 MENFWQACSA+LEQELTPQQYSAWIKPL PLDYEDG LRIAAPNRFKLDWVKTQFA RIT Sbjct: 1 MENFWQACSAQLEQELTPQQYSAWIKPLTPLDYEDGTLRIAAPNRFKLDWVKTQFASRIT 60 Query: 61 TIASEYWETQIEVQFVLDPRVGEARRAAAAAAPQGAGQGAGPGQPNRVGSMLDGYPTGIQ 120 +IA+++WE +EVQFVLDPR+ ARR AA Q + V D P+ + Sbjct: 61 SIAAQFWEVPVEVQFVLDPRLVAARRPAA--------------QASVVSDRADDVPSNVL 106 Query: 121 ESLVQPAPPPHVAPRQELSRINSVLTFDNLVTGKANQLARAAATQVANNPGVSYNPLFLY 180 E + P+ PR++ SRIN+ LTFD+ VTGKANQLARAAA QVANNPG SYNPLFLY Sbjct: 107 EPI--PSNATDHTPRRDQSRINTALTFDSFVTGKANQLARAAAIQVANNPGSSYNPLFLY 164 Query: 181 GGVGLGKTHVIHAIGNQVLADNPNAKIRYIHAEQYVRDVVTAYQRKGFDDFKRYYHSLDL 240 GGVGLGKTH+IHAIGNQVLADNPN KIRYIHAEQYVRDVVTAYQRKGFDDFKRYYHSLDL Sbjct: 165 GGVGLGKTHLIHAIGNQVLADNPNVKIRYIHAEQYVRDVVTAYQRKGFDDFKRYYHSLDL 224 Query: 241 LLIDDIQFFGGKSRTQEEFFYAFEALIAAKKQIIITSDTYPKEISGMDDRLISRFDSGLT 300 LLIDDIQFFGGKSRTQEEFFYAFEALIAAKKQIIITSDTYPKEI+GMDDRLISRFDSGLT Sbjct: 225 LLIDDIQFFGGKSRTQEEFFYAFEALIAAKKQIIITSDTYPKEITGMDDRLISRFDSGLT 284 Query: 301 VAIEPPELEMRVAILMKKATLEGVVLSDDVAFFVAKHLRSNVRELEGALRKILAYSRFHG 360 VA+EPPELEMRVAIL+KKA EGV SDDVAFFVAKHLRSNVRELEGALRKILAYSRFHG Sbjct: 285 VAVEPPELEMRVAILLKKAVQEGVTFSDDVAFFVAKHLRSNVRELEGALRKILAYSRFHG 344 Query: 361 KDITIDVVKDALKDLLSVQNRQISVENIQKTVADFFNIKVADMYSKKRPANIARPRQIAM 420 KDITI+VVKDALKDLLSVQNRQISVENIQKTVADFFNIKVADMYSKKRPANIARPRQIAM Sbjct: 345 KDITIEVVKDALKDLLSVQNRQISVENIQKTVADFFNIKVADMYSKKRPANIARPRQIAM 404 Query: 421 YLAKELTQKSLPEIGDLFGGRDHTTVLHAVRKISADRTKNPECNHELHVLEQTLKG 476 YLAKELTQKSLPEIG+LFGGRDHTTVLHAVRKI+ADR K+PECNHELHVLEQTLKG Sbjct: 405 YLAKELTQKSLPEIGELFGGRDHTTVLHAVRKIAADRGKSPECNHELHVLEQTLKG 460 >A6STW2.1 DNAA_JANMA Chromosomal replication initiator protein DnaA Length = 460 Score = 812 bits (2097), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/477 (82%), Positives = 426/477 (89%), Gaps = 18/477 (3%) Query: 1 MENFWQACSAKLEQELTPQQYSAWIKPLAPLDYEDGRLRIAAPNRFKLDWVKTQFAGRIT 60 MENFWQ CSA+LEQELTPQQYSAWIKPLAPLDYEDG LRIAAPNRFKLDWVKTQFAGRIT Sbjct: 1 MENFWQTCSAQLEQELTPQQYSAWIKPLAPLDYEDGTLRIAAPNRFKLDWVKTQFAGRIT 60 Query: 61 TIASEYWETQIEVQFVLDPRVGEARRAAAAAAPQGAGQGAGPGQPNRV-GSMLDGYPTGI 119 +IA+++W+ ++VQFVLDPR+ A++ +A+ P Q + V S+L+ P+ Sbjct: 61 SIAAQFWDMPVDVQFVLDPRLASAKKPTTSAS-------VAPIQSDDVPASVLEPIPSNA 113 Query: 120 QESLVQPAPPPHVAPRQELSRINSVLTFDNLVTGKANQLARAAATQVANNPGVSYNPLFL 179 + PR++ SRIN+ LTFD+ VTGKANQLARAAA QVANNPG SYNPLFL Sbjct: 114 TDH----------TPRRDQSRINTALTFDSFVTGKANQLARAAAIQVANNPGSSYNPLFL 163 Query: 180 YGGVGLGKTHVIHAIGNQVLADNPNAKIRYIHAEQYVRDVVTAYQRKGFDDFKRYYHSLD 239 YGGVGLGKTH+IHAIGNQVLADNP+ KIRYIHAEQYVRDVVTAYQRKGFDDFKRYYHSLD Sbjct: 164 YGGVGLGKTHLIHAIGNQVLADNPDVKIRYIHAEQYVRDVVTAYQRKGFDDFKRYYHSLD 223 Query: 240 LLLIDDIQFFGGKSRTQEEFFYAFEALIAAKKQIIITSDTYPKEISGMDDRLISRFDSGL 299 LLLIDDIQFFGGKSRTQEEFFYAFEALIAAKKQIIITSDTYPKEI+GMDDRLISRFDSGL Sbjct: 224 LLLIDDIQFFGGKSRTQEEFFYAFEALIAAKKQIIITSDTYPKEITGMDDRLISRFDSGL 283 Query: 300 TVAIEPPELEMRVAILMKKATLEGVVLSDDVAFFVAKHLRSNVRELEGALRKILAYSRFH 359 TVA+EPPELEMRVAIL+KKA EGV SDDVAFFVAKHLRSNVRELEGALRKILAYSRFH Sbjct: 284 TVAVEPPELEMRVAILLKKAVQEGVTFSDDVAFFVAKHLRSNVRELEGALRKILAYSRFH 343 Query: 360 GKDITIDVVKDALKDLLSVQNRQISVENIQKTVADFFNIKVADMYSKKRPANIARPRQIA 419 GKDITI+VVKDALKDLLSVQNRQISVENIQKTVADFFNIKVADMYSKKRPANIARPRQIA Sbjct: 344 GKDITIEVVKDALKDLLSVQNRQISVENIQKTVADFFNIKVADMYSKKRPANIARPRQIA 403 Query: 420 MYLAKELTQKSLPEIGDLFGGRDHTTVLHAVRKISADRTKNPECNHELHVLEQTLKG 476 MYLAKELTQKSLPEIG+LFGGRDHTTVLHAVRKI+ADR K+PECNHELHVLEQTLKG Sbjct: 404 MYLAKELTQKSLPEIGELFGGRDHTTVLHAVRKIAADRGKSPECNHELHVLEQTLKG 460 >F1VVH7.1 F1VVH7_9BURK Chromosomal replication initiator protein DnaA Length = 464 Score = 811 bits (2095), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/477 (82%), Positives = 424/477 (88%), Gaps = 14/477 (2%) Query: 1 MENFWQACSAKLEQELTPQQYSAWIKPLAPLDYEDGRLRIAAPNRFKLDWVKTQFAGRIT 60 M+NFWQ CSA+LEQELTPQQ+SAWIKPL PLDYE+GRLRIAAPNRFKLDWVKTQFA RIT Sbjct: 1 MDNFWQTCSAQLEQELTPQQFSAWIKPLVPLDYEEGRLRIAAPNRFKLDWVKTQFANRIT 60 Query: 61 TIASEYWETQIEVQFVLDPRVGEARRAAAAAAPQGAGQGAG-PGQPNRVGSMLDGYPTGI 119 +A +YWE I+VQFVLDPR+ R+ AA +G G G VG ++D Sbjct: 61 VLAGQYWEEPIDVQFVLDPRLNAPRKPTAAMPVAARAEGNGINGMSASVGGLID------ 114 Query: 120 QESLVQPAPPPHVAPRQELSRINSVLTFDNLVTGKANQLARAAATQVANNPGVSYNPLFL 179 PP APR++ SR+N+ LTFD+ VTGKANQLARAAA QVA+NPGVSYNPLFL Sbjct: 115 -------LPPVDSAPRRDQSRVNTALTFDSFVTGKANQLARAAAIQVADNPGVSYNPLFL 167 Query: 180 YGGVGLGKTHVIHAIGNQVLADNPNAKIRYIHAEQYVRDVVTAYQRKGFDDFKRYYHSLD 239 YGGVGLGKTH++HAIGNQV+ADNP+AKIRYIHAEQYVRDVVTAYQRKGFDDFKRYYHSLD Sbjct: 168 YGGVGLGKTHLVHAIGNQVMADNPSAKIRYIHAEQYVRDVVTAYQRKGFDDFKRYYHSLD 227 Query: 240 LLLIDDIQFFGGKSRTQEEFFYAFEALIAAKKQIIITSDTYPKEISGMDDRLISRFDSGL 299 +LLIDDIQFFGGKSRTQEEFFYAFEALIAAKKQIIITSDTYPKEI+GMDDRLISRFDSGL Sbjct: 228 VLLIDDIQFFGGKSRTQEEFFYAFEALIAAKKQIIITSDTYPKEITGMDDRLISRFDSGL 287 Query: 300 TVAIEPPELEMRVAILMKKATLEGVVLSDDVAFFVAKHLRSNVRELEGALRKILAYSRFH 359 TVA+EPPELEMRVAIL+KKA EGV SDDVAFFVAKHLRSNVRELEGALRKILA+SRFH Sbjct: 288 TVAVEPPELEMRVAILLKKAAQEGVNFSDDVAFFVAKHLRSNVRELEGALRKILAFSRFH 347 Query: 360 GKDITIDVVKDALKDLLSVQNRQISVENIQKTVADFFNIKVADMYSKKRPANIARPRQIA 419 GKDITI+VVKDALKDLLSVQNRQISVENIQKTVADFFNIKVADMYSKKRPANIARPRQIA Sbjct: 348 GKDITIEVVKDALKDLLSVQNRQISVENIQKTVADFFNIKVADMYSKKRPANIARPRQIA 407 Query: 420 MYLAKELTQKSLPEIGDLFGGRDHTTVLHAVRKISADRTKNPECNHELHVLEQTLKG 476 MYLAKELTQKSLPEIG+LFGGRDHTTVLHAVRKI ADR+K+PECNHELHVLEQTLKG Sbjct: 408 MYLAKELTQKSLPEIGELFGGRDHTTVLHAVRKIGADRSKSPECNHELHVLEQTLKG 464 >C3XC41.1 C3XC41_OXAFO Chromosomal replication initiator protein DnaA Length = 459 Score = 761 bits (1965), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/476 (77%), Positives = 409/476 (85%), Gaps = 17/476 (3%) Query: 1 MENFWQACSAKLEQELTPQQYSAWIKPLAPLDYEDGRLRIAAPNRFKLDWVKTQFAGRIT 60 ME FWQ+C ++LE ELTPQQYSAWIKPL PLDY+DG LR+AAPNRFKLDWVKTQ+A RIT Sbjct: 1 MEKFWQSCLSQLESELTPQQYSAWIKPLVPLDYKDGILRVAAPNRFKLDWVKTQYADRIT 60 Query: 61 TIASEYWETQIEVQFVLDPRVGEARRAAAAAAPQGAGQGAGPGQPNRVGSMLDGYPTGIQ 120 ++A ++ E+ ++VQF+L+P R+A+ + P P QP M Q Sbjct: 61 SLACQFLESTVDVQFMLNP----GTRSASPSKP-------APSQPKPEPVMPSETAETSQ 109 Query: 121 ESLVQPAPPPHVAPRQELSRINSVLTFDNLVTGKANQLARAAATQVANNPGVSYNPLFLY 180 S V P +E SRIN +TFD+ VTGKANQLARAAA QVANNPGVSYNPL+L+ Sbjct: 110 RSHVSDTPT------REQSRINVEMTFDSFVTGKANQLARAAAIQVANNPGVSYNPLYLF 163 Query: 181 GGVGLGKTHVIHAIGNQVLADNPNAKIRYIHAEQYVRDVVTAYQRKGFDDFKRYYHSLDL 240 GGVGLGKTH+IHAIGNQVLAD P+AKIRYIHAEQYVRDVVTAYQRKGFDDFKRYYHSLD+ Sbjct: 164 GGVGLGKTHLIHAIGNQVLADTPSAKIRYIHAEQYVRDVVTAYQRKGFDDFKRYYHSLDM 223 Query: 241 LLIDDIQFFGGKSRTQEEFFYAFEALIAAKKQIIITSDTYPKEISGMDDRLISRFDSGLT 300 LLIDDIQFF GKSRTQEEFFYAFEALIAA+KQIIITSDTYPKEISGMDDRL SRFDSGLT Sbjct: 224 LLIDDIQFFSGKSRTQEEFFYAFEALIAARKQIIITSDTYPKEISGMDDRLTSRFDSGLT 283 Query: 301 VAIEPPELEMRVAILMKKATLEGVVLSDDVAFFVAKHLRSNVRELEGALRKILAYSRFHG 360 VAIEPPELEMRVAIL+KKA EG+ LSDDVAFFVAKHLRSNVRELEGALRKILA+SRFHG Sbjct: 284 VAIEPPELEMRVAILIKKACQEGIQLSDDVAFFVAKHLRSNVRELEGALRKILAFSRFHG 343 Query: 361 KDITIDVVKDALKDLLSVQNRQISVENIQKTVADFFNIKVADMYSKKRPANIARPRQIAM 420 +DITI++ K+ALKDLL+VQNRQISVENIQKTVADFF IKVADMYSK+RPANIARPRQIAM Sbjct: 344 RDITIELTKEALKDLLNVQNRQISVENIQKTVADFFRIKVADMYSKRRPANIARPRQIAM 403 Query: 421 YLAKELTQKSLPEIGDLFGGRDHTTVLHAVRKISADRTKNPECNHELHVLEQTLKG 476 YL KELTQKSLPEIG+LFGGRDHTTVLHAVRKI+ DR KNPECNHELHVLEQTLKG Sbjct: 404 YLTKELTQKSLPEIGELFGGRDHTTVLHAVRKIAQDRLKNPECNHELHVLEQTLKG 459