BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0071.p         (194 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1G6U5.1 B1G6U5_9BURK Transcriptional regulator, TetR family          292   2e-77
E8Y188.1 E8Y188_RAHSY Regulatory protein TetR                         283   7e-75
F0C1X6.1 F0C1X6_9XANT Transcriptional regulator, TetR family          283   7e-75
C6CL51.1 C6CL51_DICZE Transcriptional regulator, TetR family          280   5e-74
D1RT28.1 D1RT28_SEROD Transcriptional regulatory protein              277   5e-73

>B1G6U5.1 B1G6U5_9BURK Transcriptional regulator, TetR family
          Length = 198

 Score =  292 bits (747), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 142/189 (75%), Positives = 160/189 (84%), Gaps = 1/189 (0%)

Query: 1   VDSPKRSDAVQNRERILTVALAELIRSAEVPLSAIAKKAGVGQGTFYRHFPTREALVMEV 60
            D P R+DA+QNRERIL VALAEL  SA+VPLS IA+KAGVGQGTFYRHFPTRE LVMEV
Sbjct: 7   TDRPARADALQNRERILAVALAELTVSADVPLSTIARKAGVGQGTFYRHFPTRETLVMEV 66

Query: 61  YRHEMSQVVEFAKYLLETRAPDQALREWMNRLAEYAITKAGLAEAIRLASVSKECAPGTG 120
           YR+EM QV  FA++LLETR+PDQALREWM RLAEYA+TKAGLA AIR  S+ ++C PG  
Sbjct: 67  YRYEMWQVANFAEHLLETRSPDQALREWMKRLAEYAMTKAGLANAIREVSLMRDC-PGKA 125

Query: 121 GYASVIAAAQMLLDANEKAGTIRAGITADDFFLAIAGIWQIDANADWRPRLAWLMDLVME 180
           GYA V+AAAQ+LLDANEKAGTIRAG+T DDFFLA AGIWQID N +W+PRLAWL+D VM 
Sbjct: 126 GYAPVVAAAQLLLDANEKAGTIRAGVTTDDFFLASAGIWQIDFNDEWQPRLAWLIDFVMA 185

Query: 181 GLRAGAPVR 189
           GLR  AP R
Sbjct: 186 GLRTVAPPR 194


>E8Y188.1 E8Y188_RAHSY Regulatory protein TetR
          Length = 198

 Score =  283 bits (725), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 140/189 (74%), Positives = 160/189 (84%), Gaps = 1/189 (0%)

Query: 1   VDSPKRSDAVQNRERILTVALAELIRSAEVPLSAIAKKAGVGQGTFYRHFPTREALVMEV 60
            D P R+DA++NRERILTVALAEL  S++VPLSAIAKKAGVGQGTFYRHFPTREALVMEV
Sbjct: 7   TDRPVRADALRNRERILTVALAELTCSSDVPLSAIAKKAGVGQGTFYRHFPTREALVMEV 66

Query: 61  YRHEMSQVVEFAKYLLETRAPDQALREWMNRLAEYAITKAGLAEAIRLASVSKECAPGTG 120
           YR+EM QV +FA++LL+TR PDQALREWM RLAEY +TKAGLA+AIR  S  ++C     
Sbjct: 67  YRYEMLQVAKFAEHLLQTRPPDQALREWMKRLAEYGMTKAGLAKAIREVSFMRDCQAKV- 125

Query: 121 GYASVIAAAQMLLDANEKAGTIRAGITADDFFLAIAGIWQIDANADWRPRLAWLMDLVME 180
           GYA VIAAAQ+LLDANEKAGTIRAG+T DDFFLA AGIWQID   + +PRLAWL+D VM 
Sbjct: 126 GYAPVIAAAQLLLDANEKAGTIRAGVTTDDFFLATAGIWQIDFKGEGQPRLAWLIDFVMA 185

Query: 181 GLRAGAPVR 189
           GL AGAP+R
Sbjct: 186 GLCAGAPLR 194


>F0C1X6.1 F0C1X6_9XANT Transcriptional regulator, TetR family
          Length = 183

 Score =  283 bits (725), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 140/180 (77%), Positives = 157/180 (87%), Gaps = 1/180 (0%)

Query: 10  VQNRERILTVALAELIRSAEVPLSAIAKKAGVGQGTFYRHFPTREALVMEVYRHEMSQVV 69
           +QNRER+L+VALAEL+RSA+VPLSAIAKKAGVGQGTFYRHFPTREALV+EVYRHEM QV 
Sbjct: 1   MQNRERLLSVALAELVRSADVPLSAIAKKAGVGQGTFYRHFPTREALVIEVYRHEMLQVT 60

Query: 70  EFAKYLLETRAPDQALREWMNRLAEYAITKAGLAEAIRLASVSKECAPGTGGYASVIAAA 129
             A+ LL+T  P+QALREWMNRLAEYAITKAGLA+A+R  + +KECA G  GYA VIAAA
Sbjct: 61  GLAEQLLKTLPPEQALREWMNRLAEYAITKAGLADALRTVANAKECA-GNAGYAPVIAAA 119

Query: 130 QMLLDANEKAGTIRAGITADDFFLAIAGIWQIDANADWRPRLAWLMDLVMEGLRAGAPVR 189
           Q+LLDANEKAGTIR GIT D FFLAIAGIWQIDA  +W+PRL WLM+ VMEGL AGAP R
Sbjct: 120 QLLLDANEKAGTIRPGITTDKFFLAIAGIWQIDATENWQPRLTWLMETVMEGLCAGAPGR 179


>C6CL51.1 C6CL51_DICZE Transcriptional regulator, TetR family
          Length = 198

 Score =  280 bits (717), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 136/189 (71%), Positives = 160/189 (84%), Gaps = 1/189 (0%)

Query: 1   VDSPKRSDAVQNRERILTVALAELIRSAEVPLSAIAKKAGVGQGTFYRHFPTREALVMEV 60
           ++ P R+DA QNRERIL++AL EL  SA+VPL+ IAKKAGVGQ TFYRHFP+RE LVMEV
Sbjct: 7   MERPARADAQQNRERILSIALQELTVSADVPLTTIAKKAGVGQATFYRHFPSREILVMEV 66

Query: 61  YRHEMSQVVEFAKYLLETRAPDQALREWMNRLAEYAITKAGLAEAIRLASVSKECAPGTG 120
           YR+EM QV ++A++LL+TR PDQALREW+ RLAEYA+TKAGLA AIR  S++ +  PG  
Sbjct: 67  YRYEMLQVTKYAEHLLQTRTPDQALREWIIRLAEYAMTKAGLANAIREVSLAGDY-PGKA 125

Query: 121 GYASVIAAAQMLLDANEKAGTIRAGITADDFFLAIAGIWQIDANADWRPRLAWLMDLVME 180
           GYA VI AAQMLLDANEKAGTI AG+T DDFFLAIAGIWQID N +WRPRL WL+D+VM 
Sbjct: 126 GYAPVIDAAQMLLDANEKAGTIHAGVTTDDFFLAIAGIWQIDFNDEWRPRLIWLIDIVMA 185

Query: 181 GLRAGAPVR 189
           GLRAGAP+R
Sbjct: 186 GLRAGAPLR 194


>D1RT28.1 D1RT28_SEROD Transcriptional regulatory protein
          Length = 198

 Score =  277 bits (709), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 132/190 (69%), Positives = 160/190 (84%), Gaps = 1/190 (0%)

Query: 1   VDSPKRSDAVQNRERILTVALAELIRSAEVPLSAIAKKAGVGQGTFYRHFPTREALVMEV 60
           ++ P R+DA QNRERIL+VAL EL  SA+VPLS+IAKKAGVGQ TFYRHFP+RE LVMEV
Sbjct: 7   MERPARADAQQNRERILSVALQELTLSADVPLSSIAKKAGVGQATFYRHFPSREILVMEV 66

Query: 61  YRHEMSQVVEFAKYLLETRAPDQALREWMNRLAEYAITKAGLAEAIRLASVSKECAPGTG 120
           YR+EM QV +FA++LL+T  PDQALREW+NRLAEYAITKAGLA AIR  S++++C     
Sbjct: 67  YRYEMLQVTKFAEHLLQTLPPDQALREWINRLAEYAITKAGLANAIREVSLTRDCQE-KA 125

Query: 121 GYASVIAAAQMLLDANEKAGTIRAGITADDFFLAIAGIWQIDANADWRPRLAWLMDLVME 180
           GYA VIAAAQ+LLDAN++AGT+  G+T DDFFLAIAGIWQ+D N +W+P+L WL+D+VM 
Sbjct: 126 GYAPVIAAAQLLLDANKEAGTLHTGVTTDDFFLAIAGIWQLDFNDEWQPQLTWLIDIVMA 185

Query: 181 GLRAGAPVRV 190
           GLRAGAP R 
Sbjct: 186 GLRAGAPRRT 195