BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0033.p         (103 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8J1U4.1 D8J1U4_HERSS Periplasmic or secreted lipoprotein             127   5e-28
Q0AIQ3.1 Q0AIQ3_NITEC Transport-associated protein                    119   2e-25
C0QGL6.1 C0QGL6_DESAH Putative periplasmatic protein                  119   2e-25
F1VUA2.1 F1VUA2_9BURK Transport-associated protein                    118   3e-25
E1MI39.1 E1MI39_9GAMM Transport-associated protein                    114   3e-24

>D8J1U4.1 D8J1U4_HERSS Periplasmic or secreted lipoprotein
          Length = 109

 Score =  127 bits (319), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 60/103 (58%), Positives = 80/103 (77%)

Query: 1   MIMTKRFAAFFFALFVLALAGCGSTPQQASTGQYIDDSVITTKVKAAIFEEPNLKTLEIG 60
           M +TKRF  FF ALF+++L GC S P +  TG+Y+DD+VITTKVKAAIF E +LK+ EI 
Sbjct: 6   MSLTKRFIGFFLALFMVSLVGCASGPNKEGTGEYVDDAVITTKVKAAIFNEKDLKSTEIN 65

Query: 61  VETFKGIVQLSGFVNNSAASLKAAEVTRKVEGVKGVKNSLVVK 103
           VET+KG+VQLSGFV++S A+ +A E+ R V+GV  V+N L +K
Sbjct: 66  VETYKGVVQLSGFVSSSTAAARATELARGVKGVVSVRNDLRLK 108


>Q0AIQ3.1 Q0AIQ3_NITEC Transport-associated protein
          Length = 104

 Score =  119 bits (297), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 56/101 (55%), Positives = 74/101 (73%)

Query: 3   MTKRFAAFFFALFVLALAGCGSTPQQASTGQYIDDSVITTKVKAAIFEEPNLKTLEIGVE 62
           +   F  FF  L +++L GC ST +Q+ TG+Y+DD+VITTKVKAAIF EP LK+ EI VE
Sbjct: 4   LNNHFFTFFLTLLMVSLLGCASTAKQSGTGEYLDDTVITTKVKAAIFNEPILKSAEINVE 63

Query: 63  TFKGIVQLSGFVNNSAASLKAAEVTRKVEGVKGVKNSLVVK 103
           TFKG+VQLSGFV++   + +A E+ R V GVK VKN + +K
Sbjct: 64  TFKGVVQLSGFVSSQVHANRAVEIARSVGGVKSVKNDMRIK 104


>C0QGL6.1 C0QGL6_DESAH Putative periplasmatic protein
          Length = 105

 Score =  119 bits (297), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 60/96 (62%), Positives = 73/96 (76%), Gaps = 1/96 (1%)

Query: 9   AFFFALFVLA-LAGCGSTPQQASTGQYIDDSVITTKVKAAIFEEPNLKTLEIGVETFKGI 67
            F    F+ A +AGC  T  + S G+Y+DDSVITTKVKA IF+EP LK L+I VETFKG 
Sbjct: 9   CFIIGFFLFAFVAGCAGTRHKESMGEYVDDSVITTKVKAQIFDEPMLKVLQINVETFKGE 68

Query: 68  VQLSGFVNNSAASLKAAEVTRKVEGVKGVKNSLVVK 103
           VQLSGFVN++AAS +A EV R V+GV+ VKNSL+VK
Sbjct: 69  VQLSGFVNSAAASARAVEVARSVKGVQSVKNSLIVK 104


>F1VUA2.1 F1VUA2_9BURK Transport-associated protein
          Length = 103

 Score =  118 bits (295), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 58/103 (56%), Positives = 75/103 (72%)

Query: 1   MIMTKRFAAFFFALFVLALAGCGSTPQQASTGQYIDDSVITTKVKAAIFEEPNLKTLEIG 60
           MI +KR + FF A  ++A+AGC ST  +  TG+Y+DD+VITTKVKAA+  EP LK+ EI 
Sbjct: 1   MIFSKRISTFFLAAALIAVAGCASTSTKEGTGEYVDDTVITTKVKAALLNEPALKSREIN 60

Query: 61  VETFKGIVQLSGFVNNSAASLKAAEVTRKVEGVKGVKNSLVVK 103
           VETFKG+VQLSGFV N A +  AA + R V+GV  VKN + +K
Sbjct: 61  VETFKGVVQLSGFVANQADATMAATLARGVKGVMSVKNDIRMK 103


>E1MI39.1 E1MI39_9GAMM Transport-associated protein
          Length = 104

 Score =  114 bits (286), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 56/101 (55%), Positives = 71/101 (70%)

Query: 3   MTKRFAAFFFALFVLALAGCGSTPQQASTGQYIDDSVITTKVKAAIFEEPNLKTLEIGVE 62
           + + F+AFF  L +L+ AGC ST +   TG+Y+DDSVITTKVK AI  EP L + EI VE
Sbjct: 4   LIRVFSAFFLTLTLLSAAGCASTEKHEGTGEYVDDSVITTKVKTAILNEPGLSSAEINVE 63

Query: 63  TFKGIVQLSGFVNNSAASLKAAEVTRKVEGVKGVKNSLVVK 103
           TFKG+VQLSGFV + A   KA E+ R V+GV  VKN + +K
Sbjct: 64  TFKGVVQLSGFVTSRADINKAIEIARNVKGVNSVKNDMRLK 104