BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0014.p (229 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IWP7.1 D8IWP7_HERSS Cyclic nucleotide-binding protein 415 e-114 C7RTU8.1 C7RTU8_ACCPU Transcriptional regulator, Crp/Fnr family 283 2e-74 Q0KEY6.1 Q0KEY6_CUPNH Transcriptional regulator, CRP-family 279 2e-73 Q476P2.1 Q476P2_CUPPJ Cyclic nucleotide-binding protein 277 9e-73 B2AGJ7.1 B2AGJ7_CUPTR Putative transcriptional regulator, crp fa... 276 2e-72 >D8IWP7.1 D8IWP7_HERSS Cyclic nucleotide-binding protein Length = 225 Score = 415 bits (1067), Expect = e-114, Method: Compositional matrix adjust. Identities = 200/222 (90%), Positives = 211/222 (95%) Query: 6 KTTIQDMLGKSIWARALTSEQLERVQSEIFSRKIPAGGFVCHKGDPVSHWIGVHEGLLKM 65 +T+I+ ML KSIWA+ALT EQL RV++E+ SRKIPAGG+VC KGD V+HWIGVHEGLLKM Sbjct: 2 ETSIRRMLAKSIWAQALTEEQLARVETEVVSRKIPAGGYVCRKGDAVTHWIGVHEGLLKM 61 Query: 66 SSVSPEGKTVSFAGMANGGWLGEGSLLKDEPRKYDVVALRDSELLYMPKATYLWLLDNSI 125 SSVSPEGKTVSFAGMANGGWLGEGSLLKDEPRKYDVVALR+SELLYMPKATY+WLLDNSI Sbjct: 62 SSVSPEGKTVSFAGMANGGWLGEGSLLKDEPRKYDVVALRESELLYMPKATYIWLLDNSI 121 Query: 126 PFNRFLVTQLNERLGLFISLVEYDRMLEPDARVARCLAALFNPYLNPGIGLELQISQEEV 185 PFNRFLVTQLNERL LFISLVEYDRMLEPDARVARCLAALFNPYLNPGIGL LQISQEEV Sbjct: 122 PFNRFLVTQLNERLALFISLVEYDRMLEPDARVARCLAALFNPYLNPGIGLNLQISQEEV 181 Query: 186 GNLSGASRQRANQALQVLEKAGLLKVDYGSITILDLEGLRQF 227 GNLSG SRQRANQALQVLEKAGLLKVDYGSITI DLEGLRQF Sbjct: 182 GNLSGTSRQRANQALQVLEKAGLLKVDYGSITINDLEGLRQF 223 >C7RTU8.1 C7RTU8_ACCPU Transcriptional regulator, Crp/Fnr family Length = 230 Score = 283 bits (723), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 129/227 (56%), Positives = 178/227 (78%) Query: 1 MIETSKTTIQDMLGKSIWARALTSEQLERVQSEIFSRKIPAGGFVCHKGDPVSHWIGVHE 60 +IE ++ DML S WAR L++++L++V+ + F R IPAGG+VC KG+ V +W+G+ + Sbjct: 2 LIEPRIQSLDDMLCASCWARQLSADELDQVRRDTFVRTIPAGGYVCMKGEAVDYWLGIVD 61 Query: 61 GLLKMSSVSPEGKTVSFAGMANGGWLGEGSLLKDEPRKYDVVALRDSELLYMPKATYLWL 120 GL KM+S GK SF G+++G W GEGSL+KDEPR+YDV+ALR+S + YM ++ + L Sbjct: 62 GLAKMASNWRTGKATSFVGLSSGSWFGEGSLMKDEPRRYDVIALRESRIAYMKRSRFQHL 121 Query: 121 LDNSIPFNRFLVTQLNERLGLFISLVEYDRMLEPDARVARCLAALFNPYLNPGIGLELQI 180 LD+SIPFNRFL+ QLNERL FI ++E++R+L+ D+R+ARCLA++FNP L PG LEL+I Sbjct: 122 LDHSIPFNRFLLLQLNERLSQFIGMIEHERLLDSDSRLARCLASMFNPLLYPGSSLELRI 181 Query: 181 SQEEVGNLSGASRQRANQALQVLEKAGLLKVDYGSITILDLEGLRQF 227 SQEE+G L+G SRQR NQAL LE+AGLL++DYG++TILDL GLR F Sbjct: 182 SQEEIGLLAGISRQRVNQALHKLEEAGLLRIDYGTLTILDLAGLRSF 228 >Q0KEY6.1 Q0KEY6_CUPNH Transcriptional regulator, CRP-family Length = 222 Score = 279 bits (714), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 126/219 (57%), Positives = 172/219 (78%) Query: 9 IQDMLGKSIWARALTSEQLERVQSEIFSRKIPAGGFVCHKGDPVSHWIGVHEGLLKMSSV 68 + D + + +WA L+ EQ ERV+ +F + G +VCHKGD HW+GV EG++K+++V Sbjct: 2 LNDFVDRCVWAADLSPEQRERVRRAMFVHEYTQGDYVCHKGDMAEHWMGVLEGIVKITTV 61 Query: 69 SPEGKTVSFAGMANGGWLGEGSLLKDEPRKYDVVALRDSELLYMPKATYLWLLDNSIPFN 128 SP GK+V+F G+ GGW GEG++LK E RKYDV+ALR S + ++P+ T+LWLLD S+PF Sbjct: 62 SPSGKSVTFTGVPTGGWFGEGAVLKSEIRKYDVMALRRSTIAFLPRDTFLWLLDTSLPFT 121 Query: 129 RFLVTQLNERLGLFISLVEYDRMLEPDARVARCLAALFNPYLNPGIGLELQISQEEVGNL 188 RFL+TQ NERLG FI+ VEY+R+L+ D+RVAR +++LFN +L PGIG L+ISQEE+G L Sbjct: 122 RFLLTQFNERLGQFIAAVEYERLLDIDSRVARAVSSLFNEHLYPGIGKTLEISQEEIGLL 181 Query: 189 SGASRQRANQALQVLEKAGLLKVDYGSITILDLEGLRQF 227 +G SRQRANQAL+VLE+ GL++VDYG I +LDLEGLRQ+ Sbjct: 182 AGISRQRANQALKVLEQQGLVRVDYGVIEVLDLEGLRQY 220 >Q476P2.1 Q476P2_CUPPJ Cyclic nucleotide-binding protein Length = 222 Score = 277 bits (708), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 124/219 (56%), Positives = 173/219 (78%) Query: 9 IQDMLGKSIWARALTSEQLERVQSEIFSRKIPAGGFVCHKGDPVSHWIGVHEGLLKMSSV 68 + D + + +WA L++EQ +RV+ +F R+ G +VCHKG+ HW+GV EG++K+++V Sbjct: 2 LNDFVDRCVWAADLSAEQRDRVRRAMFVREYTQGDYVCHKGEIAEHWLGVLEGIVKITTV 61 Query: 69 SPEGKTVSFAGMANGGWLGEGSLLKDEPRKYDVVALRDSELLYMPKATYLWLLDNSIPFN 128 SP GK+V+F G+ GGW GEG++LK E RKYDV+ALR S + ++P+ T+ WLLD S+PF Sbjct: 62 SPSGKSVTFTGVPTGGWFGEGAVLKSEIRKYDVMALRRSTIAFLPRDTFQWLLDTSLPFT 121 Query: 129 RFLVTQLNERLGLFISLVEYDRMLEPDARVARCLAALFNPYLNPGIGLELQISQEEVGNL 188 RFL+TQ NERLG FI+ VEY+R+L+ D+RVAR +++LFN +L PGIG L+ISQEE+G L Sbjct: 122 RFLLTQFNERLGQFIAAVEYERLLDIDSRVARAVSSLFNEHLYPGIGNTLEISQEEIGLL 181 Query: 189 SGASRQRANQALQVLEKAGLLKVDYGSITILDLEGLRQF 227 +G SRQRANQAL+VLE+ GL++VDYG I +LDLEGLRQ+ Sbjct: 182 AGISRQRANQALKVLEQQGLVRVDYGVIEVLDLEGLRQY 220 >B2AGJ7.1 B2AGJ7_CUPTR Putative transcriptional regulator, crp family Length = 222 Score = 276 bits (705), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 124/219 (56%), Positives = 171/219 (78%) Query: 9 IQDMLGKSIWARALTSEQLERVQSEIFSRKIPAGGFVCHKGDPVSHWIGVHEGLLKMSSV 68 + D + + +WA L+ EQ ERV+ +F + G +VCHKGD HW+GV EG++K+++V Sbjct: 2 LNDFVDRCVWAADLSPEQRERVRRAMFVHEYSQGDYVCHKGDKAEHWLGVLEGIVKITTV 61 Query: 69 SPEGKTVSFAGMANGGWLGEGSLLKDEPRKYDVVALRDSELLYMPKATYLWLLDNSIPFN 128 SP GK+V+F G+ GGW GEG++LK E RKYDV+ALR S + ++P+ T+ WLLD S+PF Sbjct: 62 SPSGKSVTFTGVPTGGWFGEGAVLKSEIRKYDVMALRRSTIAFLPRDTFQWLLDTSLPFT 121 Query: 129 RFLVTQLNERLGLFISLVEYDRMLEPDARVARCLAALFNPYLNPGIGLELQISQEEVGNL 188 RFL+TQ NERLG FI+ VEY+R+L+ D+RVAR +++LFN +L PGIG L+ISQEE+G L Sbjct: 122 RFLLTQFNERLGQFIAAVEYERLLDIDSRVARAVSSLFNEHLYPGIGKTLEISQEEIGLL 181 Query: 189 SGASRQRANQALQVLEKAGLLKVDYGSITILDLEGLRQF 227 +G SRQRANQAL+VLE+ GL++VDYG I +LDL+GLRQ+ Sbjct: 182 AGISRQRANQALKVLEQQGLVRVDYGVIEVLDLDGLRQY 220