BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0013.p         (150 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IWP8.1 D8IWP8_HERSS Two component response regulator protein        206   1e-51
B6APN9.1 B6APN9_9BACT Putative response regulator receiver protein    133   7e-30
A3EVK2.1 A3EVK2_9BACT Putative response regulator receiver protein    133   8e-30
E4QL90.1 E4QL90_METS6 Response regulator receiver protein             127   4e-28
C6X7I7.1 C6X7I7_METSD Response regulator receiver protein             127   4e-28

>D8IWP8.1 D8IWP8_HERSS Two component response regulator protein
          Length = 151

 Score =  206 bits (523), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 107/144 (74%), Positives = 125/144 (86%), Gaps = 1/144 (0%)

Query: 7   DMEQMDIMLVDDSPEVAELTRIALDSKKLADKMTWFADAEEAADYMFSDNGFVARKDLHP 66
           D+EQ DI+LVDDSPEVAELTR+AL S+KLADK+TWFADAE A ++ F    +  R+DLHP
Sbjct: 2   DIEQYDIILVDDSPEVAELTRLALGSRKLADKLTWFADAELAEEFFFQGE-YAQRRDLHP 60

Query: 67  RLILLDLHLPLMSGHDFLKIIKSNAATAHIPVVMFSSSDDQRDIVQSYQLGANGYLMKSA 126
            LILLDL+LPLMSGHDFLKIIKSNAAT+HIPVVMFSSSDDQRDI QSY+LGANGY++KS 
Sbjct: 61  YLILLDLNLPLMSGHDFLKIIKSNAATSHIPVVMFSSSDDQRDINQSYELGANGYVVKST 120

Query: 127 DPREFIGTVADAGMYWMNRNKVVR 150
           DP+EF+GTV D G+YW NRN+  R
Sbjct: 121 DPKEFMGTVVDTGIYWRNRNRPAR 144


>B6APN9.1 B6APN9_9BACT Putative response regulator receiver protein
          Length = 148

 Score =  133 bits (335), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 63/141 (44%), Positives = 92/141 (65%)

Query: 8   MEQMDIMLVDDSPEVAELTRIALDSKKLADKMTWFADAEEAADYMFSDNGFVARKDLHPR 67
           +E ++I+LV+D+P+ AELTR AL      + +TW  D EEA  Y++    F  R D  PR
Sbjct: 5   VESVEILLVEDNPDDAELTRRALQKHHFINMVTWVKDGEEALAYLYGSEKFPDRPDRPPR 64

Query: 68  LILLDLHLPLMSGHDFLKIIKSNAATAHIPVVMFSSSDDQRDIVQSYQLGANGYLMKSAD 127
           LILLD  LP + G + L+ IKS+    HIPVVM +SS+++RD+V +Y+LG N Y++K  +
Sbjct: 65  LILLDFKLPKLDGIEVLRRIKSDENLKHIPVVMLTSSNEERDLVDAYRLGVNSYIVKPVE 124

Query: 128 PREFIGTVADAGMYWMNRNKV 148
             EF+ TV+  G YW+  N+V
Sbjct: 125 FEEFVKTVSGIGFYWVLTNRV 145


>A3EVK2.1 A3EVK2_9BACT Putative response regulator receiver protein
          Length = 148

 Score =  133 bits (335), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 63/141 (44%), Positives = 92/141 (65%)

Query: 8   MEQMDIMLVDDSPEVAELTRIALDSKKLADKMTWFADAEEAADYMFSDNGFVARKDLHPR 67
           +E ++I+LV+D+P+ AELTR AL      + +TW  D EEA  Y++    F  R D  PR
Sbjct: 5   VESVEILLVEDNPDDAELTRRALQKHHFINMVTWVKDGEEALAYLYGTKKFPDRPDRPPR 64

Query: 68  LILLDLHLPLMSGHDFLKIIKSNAATAHIPVVMFSSSDDQRDIVQSYQLGANGYLMKSAD 127
           LILLD  LP + G + L+ IKS+    HIPVVM +SS+++RD+V +Y+LG N Y++K  +
Sbjct: 65  LILLDFKLPKLDGIEVLRRIKSDENLKHIPVVMLTSSNEERDLVDAYRLGVNSYIVKPVE 124

Query: 128 PREFIGTVADAGMYWMNRNKV 148
             EF+ TV+  G YW+  N+V
Sbjct: 125 FEEFVKTVSGIGFYWVLTNRV 145


>E4QL90.1 E4QL90_METS6 Response regulator receiver protein
          Length = 148

 Score =  127 bits (320), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 62/142 (43%), Positives = 90/142 (63%)

Query: 7   DMEQMDIMLVDDSPEVAELTRIALDSKKLADKMTWFADAEEAADYMFSDNGFVARKDLHP 66
           D++Q+ I+LV+DS   AE+TR AL    L +++ W  D +EA DY+F    F  R    P
Sbjct: 3   DLQQVQILLVEDSETDAEMTRRALKKIGLTNEILWLKDGQEALDYVFRQGAFEHRVKHSP 62

Query: 67  RLILLDLHLPLMSGHDFLKIIKSNAATAHIPVVMFSSSDDQRDIVQSYQLGANGYLMKSA 126
           +LILLDL +P + G + L+ IK +  T  IPVVM +SS ++RDIV+SY+LG N YL+K  
Sbjct: 63  KLILLDLKMPRVDGIEVLQQIKKSEQTRMIPVVMLTSSAEERDIVKSYELGVNSYLVKPV 122

Query: 127 DPREFIGTVADAGMYWMNRNKV 148
           +  +F+  V+  G YW   NK+
Sbjct: 123 EFDQFVEEVSKVGCYWAILNKI 144


>C6X7I7.1 C6X7I7_METSD Response regulator receiver protein
          Length = 148

 Score =  127 bits (320), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 62/142 (43%), Positives = 90/142 (63%)

Query: 7   DMEQMDIMLVDDSPEVAELTRIALDSKKLADKMTWFADAEEAADYMFSDNGFVARKDLHP 66
           D++Q+ I+LV+DS   AE+TR AL    L +++ W  D +EA DY+F    F  R    P
Sbjct: 3   DLQQVQILLVEDSETDAEMTRRALKKIGLTNEILWLKDGQEALDYVFRQGAFEHRVKHSP 62

Query: 67  RLILLDLHLPLMSGHDFLKIIKSNAATAHIPVVMFSSSDDQRDIVQSYQLGANGYLMKSA 126
           +LILLDL +P + G + L+ IK +  T  IPVVM +SS ++RDIV+SY+LG N YL+K  
Sbjct: 63  KLILLDLKMPRVDGIEVLQQIKKSEETRMIPVVMLTSSAEERDIVKSYELGVNSYLVKPV 122

Query: 127 DPREFIGTVADAGMYWMNRNKV 148
           +  +F+  V+  G YW   NK+
Sbjct: 123 EFDQFVEEVSKVGCYWAILNKI 144