BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0012.p (216 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IWP9.1 D8IWP9_HERSS LuxR family two component response regulat... 365 2e-99 B9XSJ0.1 B9XSJ0_9BACT Two component transcriptional regulator, L... 249 3e-64 D8PBT9.1 D8PBT9_9BACT Response regulator, LuxR family 239 2e-61 B1ZVM0.1 B1ZVM0_OPITP Two component transcriptional regulator, L... 231 5e-59 Q220B1.1 Q220B1_RHOFD Two component transcriptional regulator, L... 210 1e-52 >D8IWP9.1 D8IWP9_HERSS LuxR family two component response regulator protein Length = 216 Score = 365 bits (937), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 178/216 (82%), Positives = 197/216 (91%) Query: 1 MLTRIVLADDHALVRSGIKSLLMAMPGIEVVGEADDGNAAIELTEKLRPDVVVMDIAMKG 60 MLTRI+LADDHALVRSGIK+LL AMPG+EVVGEA DG IE+ +L+PD+V++DIAMKG Sbjct: 1 MLTRIMLADDHALVRSGIKALLTAMPGVEVVGEASDGAEVIEMIPQLKPDLVLLDIAMKG 60 Query: 61 MNGLEAVRRLRADHPATKFLMLSMYGSEEYVMQALNAGANGYLFKDSAAYELEKALIEVI 120 MNGLEA+RRLR ++P +FLMLSMYGSEEYVMQALNAGANGYLFKDSAA ELEKAL EV Sbjct: 61 MNGLEALRRLRGEYPTIRFLMLSMYGSEEYVMQALNAGANGYLFKDSAATELEKALYEVK 120 Query: 121 QGRQYLDSHISKDALDLYMKKVAQGGMPVEVLTPRQREILQLIAEGNNTKEIAYRLNVSA 180 GRQYLDSHIS++ALD YMK+VAQ G PVEVLTPRQREILQLIAEGNNTKEIAY+LNVSA Sbjct: 121 HGRQYLDSHISREALDNYMKRVAQNGTPVEVLTPRQREILQLIAEGNNTKEIAYQLNVSA 180 Query: 181 KTIETHRAQLMERLEIRDVPGLVRYAIRTGLTTSDK 216 KTIETHRAQLMERL+IRDVPGLVRYAIRTG+ T DK Sbjct: 181 KTIETHRAQLMERLDIRDVPGLVRYAIRTGIATPDK 216 >B9XSJ0.1 B9XSJ0_9BACT Two component transcriptional regulator, LuxR family Length = 217 Score = 249 bits (635), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 123/211 (58%), Positives = 160/211 (75%) Query: 4 RIVLADDHALVRSGIKSLLMAMPGIEVVGEADDGNAAIELTEKLRPDVVVMDIAMKGMNG 63 RI+LADDH L+R+GI+SLL MPG+EVVGEA DG A+ L + L+P VV+MDIAM G+NG Sbjct: 5 RILLADDHTLLRAGIRSLLEKMPGVEVVGEAADGREALSLVKALQPGVVLMDIAMSGLNG 64 Query: 64 LEAVRRLRADHPATKFLMLSMYGSEEYVMQALNAGANGYLFKDSAAYELEKALIEVIQGR 123 LEA R+ + P+++ ++LSM+ +EEYV+Q L AGA GYL KD+A ELE A+ V +G Sbjct: 65 LEATARIVKEFPSSRVIILSMHANEEYVLQTLRAGAAGYLLKDAATAELELAIQAVSRGD 124 Query: 124 QYLDSHISKDALDLYMKKVAQGGMPVEVLTPRQREILQLIAEGNNTKEIAYRLNVSAKTI 183 YL ISK ++ Y+ ++ P+E LTPRQREILQLIAEG +TKE+A+ LN+S KT+ Sbjct: 125 TYLSPAISKRVIEDYLGRINGQKSPMEQLTPRQREILQLIAEGKSTKEMAFLLNLSVKTV 184 Query: 184 ETHRAQLMERLEIRDVPGLVRYAIRTGLTTS 214 ETHR QLM+RL I DVPGLVRYA+R GL +S Sbjct: 185 ETHRTQLMDRLGIHDVPGLVRYAMRMGLISS 215 >D8PBT9.1 D8PBT9_9BACT Response regulator, LuxR family Length = 216 Score = 239 bits (610), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 126/213 (59%), Positives = 158/213 (74%), Gaps = 2/213 (0%) Query: 4 RIVLADDHALVRSGIKSLLMAMPGIEVVGEADDGNAAIELTEKLRPDVVVMDIAMKGMNG 63 R++L +DH LVR+G + LL + GI V+GE DG +A +L ++L PDVV+MDIAM GMNG Sbjct: 5 RVLLVEDHTLVRAGFRVLLEKIEGILVIGEVSDGRSATKLAKELDPDVVLMDIAMAGMNG 64 Query: 64 LEAVRRLRADHPATKFLMLSMYGSEEYVMQALNAGANGYLFKDSAAYELEKALIEVIQGR 123 LEA RR+R + P TK LMLSMY +EEY+ +AL AGA GYL KD+ ELE A+ V + Sbjct: 65 LEATRRIRQESPRTKILMLSMYTNEEYLKEALRAGAAGYLLKDADRNELELAIKAVWRSE 124 Query: 124 QYLDSHISKDALDLYMKK-VAQGGMPVEVLTPRQREILQLIAEGNNTKEIAYRLNVSAKT 182 YL ++K A+D Y ++ AQ G P+ LT RQREILQLIAEG +TK+IA RL++S KT Sbjct: 125 TYLTPSMTKFAVDAYCQQGEAQTG-PLARLTGRQREILQLIAEGCSTKQIAQRLDLSVKT 183 Query: 183 IETHRAQLMERLEIRDVPGLVRYAIRTGLTTSD 215 +ETHRAQLMERL+I DVPGLVR AIRTGL SD Sbjct: 184 VETHRAQLMERLDIHDVPGLVRLAIRTGLVQSD 216 >B1ZVM0.1 B1ZVM0_OPITP Two component transcriptional regulator, LuxR family Length = 219 Score = 231 bits (589), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 115/213 (53%), Positives = 150/213 (70%), Gaps = 1/213 (0%) Query: 4 RIVLADDHALVRSGIKSLLMAMPGIEVVGEADDGNAAIELTEKLRPDVVVMDIAMKGMNG 63 +IVLADDHALVR+GI++LL +PG+ +VGEA DG + L PD+ +MDI M G+NG Sbjct: 6 KIVLADDHALVRAGIRTLLEKLPGVTIVGEAGDGRETVTLVHTFAPDIAIMDITMPGLNG 65 Query: 64 LEAVRRLRADHPATKFLMLSMYGSEEYVMQALNAGANGYLFKDSAAYELEKALIEVIQGR 123 +A R+ +HP TK L+LSM+ +E+YV+QAL AGA GYL KD+A EL+ AL V +G Sbjct: 66 FDATARIAREHPRTKVLILSMHTAEDYVLQALRAGATGYLLKDAATAELQLALNAVRKGE 125 Query: 124 QYLDSHISKDALDLYMKKVAQG-GMPVEVLTPRQREILQLIAEGNNTKEIAYRLNVSAKT 182 YL ISK L + ++ P + LTPR REI+QLIAEG +TKEIA+ LN+S KT Sbjct: 126 TYLSPSISKSVLARFRQQEQDPRAEPTKALTPRMREIVQLIAEGRSTKEIAFLLNLSVKT 185 Query: 183 IETHRAQLMERLEIRDVPGLVRYAIRTGLTTSD 215 IETHR LM RL + DV G+VRYA+RTGL ++D Sbjct: 186 IETHRMHLMARLGLHDVAGVVRYALRTGLISAD 218 >Q220B1.1 Q220B1_RHOFD Two component transcriptional regulator, LuxR family Length = 217 Score = 210 bits (534), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 113/212 (53%), Positives = 152/212 (71%) Query: 3 TRIVLADDHALVRSGIKSLLMAMPGIEVVGEADDGNAAIELTEKLRPDVVVMDIAMKGMN 62 R++LADDH LVR+G++ LL +MP +EVVGEA DG A + L +L+P +V+MDIAM G+N Sbjct: 4 VRVLLADDHTLVRAGLRKLLESMPDVEVVGEAADGLALLALAAELQPQLVMMDIAMPGLN 63 Query: 63 GLEAVRRLRADHPATKFLMLSMYGSEEYVMQALNAGANGYLFKDSAAYELEKALIEVIQG 122 GLEA RL P + L+LSM+ +EEYV QAL GA YL KD A ELE AL V++G Sbjct: 64 GLEATARLAKAWPTIRVLILSMHQNEEYVRQALRNGAAAYLLKDCAPLELELALKAVLRG 123 Query: 123 RQYLDSHISKDALDLYMKKVAQGGMPVEVLTPRQREILQLIAEGNNTKEIAYRLNVSAKT 182 YL +SK + Y++++ P LTPRQRE+LQLIAEG +TKEIA RL+++ KT Sbjct: 124 ETYLSPAVSKGVVSDYVQRLRGEAQPGAQLTPRQREVLQLIAEGQSTKEIARRLDLAVKT 183 Query: 183 IETHRAQLMERLEIRDVPGLVRYAIRTGLTTS 214 +E+HR+QLM++L+I +V GLVRYA+ G+ TS Sbjct: 184 VESHRSQLMKQLDIHEVAGLVRYAMHVGVVTS 215