BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0008.p         (185 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IWQ1.1 D8IWQ1_HERSS Two component sensor histidine kinase prot...   134   6e-30
B2J2Z8.1 B2J2Z8_NOSP7 Multi-sensor signal transduction histidine...    70   1e-10

>D8IWQ1.1 D8IWQ1_HERSS Two component sensor histidine kinase protein
           EC=2.7.3.-
          Length = 633

 Score =  134 bits (337), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 77/170 (45%), Positives = 108/170 (63%), Gaps = 7/170 (4%)

Query: 14  ALVNTGAFFVLAMLLSIGVATTAYRSVRVFEARAIWVEHTHTVLQRLEETHSTLRDLVAN 73
           A  +TG FF+LA+LLSIGVA  +Y SVR FE RA+W++HTHTV+  LEET+S LR+ V N
Sbjct: 33  ARASTGIFFLLALLLSIGVAGFSYHSVRDFEQRAVWLQHTHTVINVLEETNSALRETVGN 92

Query: 74  ALGYALSSRHEYLLGFESDRNLLHRSLSGLRALLIDNQDQLDRLNDLSISIAQRIELARA 133
           + GY LS   EY   FE+    +   +  LR L+ DN+ Q++RL+     + QR+ L+R 
Sbjct: 93  SRGYVLSGNEEYRTSFEAGVRHVQALMQDLRRLMSDNERQIERLDSTEDLVNQRLALSRE 152

Query: 134 LIEADKELRIDNAHE---HGRDLSADIRRQFVALKDVEQALLAERSXPTA 180
           ++     LR + A E    G+ LS +IRR+F  +K  E ALLA+RS  T+
Sbjct: 153 IL----ALRPEQARERVLEGKALSDEIRRRFAEMKGNENALLAKRSQDTS 198


>B2J2Z8.1 B2J2Z8_NOSP7 Multi-sensor signal transduction histidine kinase
          Length = 497

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 83/165 (50%), Gaps = 7/165 (4%)

Query: 17  NTGAFFVLAMLLSIGVATTAYRSVRVFEARAIWVEHTHTVLQRLEETHSTLRDLVANALG 76
           NTG+F V+A+ +  G+   +Y S+  ++  A WV HT  VL++ +E  S ++D      G
Sbjct: 9   NTGSF-VIAVAIMTGIGVVSYLSLLQYKENAQWVTHTREVLEKTKEIMSQIKDAETGQRG 67

Query: 77  YALSSRHEYLLGFESDRNLLHRSLSGLRALLIDNQDQLDRLNDLSISIAQRIELARALIE 136
           Y L+ +  YL  +      + + L  LR L  DN +Q  RL+ L   I +++ L    I 
Sbjct: 68  YLLTGKKRYLEPYRIATGEIVQQLKALRQLTADNPNQQRRLDRLEPLITKKLVLIEQAIN 127

Query: 137 A-----DKELRIDNAHEHGRDLSADIRRQFVALKDVEQALLAERS 176
           A     +  L+I    + G+ +  DIR    A+++ E  LL +RS
Sbjct: 128 ARSKDLESALQIVQT-DRGQQIMEDIRMLTTAMENEENELLKQRS 171