BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0006.p         (259 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A6SYP9.1 A6SYP9_JANMA Hemagglutinin-related protein                   274   8e-72

>A6SYP9.1 A6SYP9_JANMA Hemagglutinin-related protein
          Length = 2112

 Score =  274 bits (701), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 158/237 (66%), Positives = 195/237 (82%), Gaps = 1/237 (0%)

Query: 2   IIADQGAVTLNNTSNSVAELSGYSNGPSGFSFVNAGALTAGTVAGSNGLVSFGAAPVSLT 61
           IIAD+GAVTLNN +N+++ L+GYS    GFSFVN+      TV GSNG++SFG+  +SLT
Sbjct: 636 IIADEGAVTLNNNANTLSYLAGYSTSAGGFSFVNSSGFAVSTVYGSNGVLSFGSGALSLT 695

Query: 62  ALTGDLTIADTTYGVMAGSSGT-SALSLNASNGQVLGSGIVKGGNVTINSATGISLAGAQ 120
           A TGDLTIA+TTYGV AGS GT S L+L A NGQVLG+GIVKGG VTINSATGI+L GA 
Sbjct: 696 ARTGDLTIANTTYGVNAGSMGTPSLLTLTADNGQVLGNGIVKGGAVTINSATGINLTGAH 755

Query: 121 NQIGTLNASVTGSGDVTLVNNKALSIASVSTGAANAAINISTTAGAAFGIEVAGAISTGS 180
           N+IGTL A+VTGSGDV + N++ LSIAS++TG+ NA I+ISTTAG+A+GIEVAGAI+TG 
Sbjct: 756 NEIGTLTANVTGSGDVLVTNDQNLSIASINTGSVNALIDISTTAGSAYGIEVAGAITTGG 815

Query: 181 TGSVTLNAGGSGAITRVGSGSVIRTNTLNLQNTSSGAIGTLGSSLLTAAVGGGNTNL 237
            GSV+LNAG +GAITR G+ S+I TN L LQ++SSGAIGTL ++LLT+AV GGNT+ 
Sbjct: 816 AGSVSLNAGSTGAITRTGASSIISTNNLTLQDSSSGAIGTLSNALLTSAVSGGNTDF 872