BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0108.p (278 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A6STX3.1 A6STX3_JANMA Response regulator/GGDEF domain protein 397 e-109 D8J0E8.1 D8J0E8_HERSS Response regulator protein 358 5e-97 Q46V29.1 Q46V29_CUPPJ Response regulator receiver modulated digu... 334 8e-90 Q1LG91.1 Q1LG91_RALME Putative response regulator of a two-compo... 332 4e-89 A4JMT3.1 A4JMT3_BURVG Response regulator receiver modulated digu... 325 4e-87 >A6STX3.1 A6STX3_JANMA Response regulator/GGDEF domain protein Length = 341 Score = 397 bits (1020), Expect = e-109, Method: Compositional matrix adjust. Identities = 191/228 (83%), Positives = 212/228 (92%) Query: 12 NDSDLGIRLPPADYKIMVLLVDDQAMVGEAIRRALLTESDIDFHFCPRAEDALGIAEKTQ 71 +DSDLGI LP +YKIMVLLVDDQ MVGEAIRRALL++ +IDFH+C RA++AL +AEKT+ Sbjct: 7 SDSDLGIHLPAEEYKIMVLLVDDQPMVGEAIRRALLSDPNIDFHYCARADEALRVAEKTK 66 Query: 72 PTVILQDLVMPGVDGLTLVKQYRSNPLTMDIPIIVLSSKEDALVKRDAFATGVNDYMVKL 131 PTVILQDLVMPGVDGLTLV+QYR N +T DIPIIVLS++EDA VKRDAFATGVNDYMVKL Sbjct: 67 PTVILQDLVMPGVDGLTLVRQYRQNAITCDIPIIVLSTREDAEVKRDAFATGVNDYMVKL 126 Query: 132 PDTIELIARIRYHSRSYNNLLQRDAAYRALRESQQQLQKSNFELQRLTNTDGLTSIANRR 191 PDTIELIARIRYHSRSYNNLLQRDAAYRALRESQQQLQKSNFELQRLTNTDGLT IANRR Sbjct: 127 PDTIELIARIRYHSRSYNNLLQRDAAYRALRESQQQLQKSNFELQRLTNTDGLTGIANRR 186 Query: 192 YFDDYLNAEWKRAKRVQQEISLLLIDVDNFKLYNDNYGHVAGNSXLRR 239 YFDDYL+AEWKRA+R QQE+S+LLIDVDNFKLYND YGHVAG+ L++ Sbjct: 187 YFDDYLSAEWKRARREQQELSILLIDVDNFKLYNDTYGHVAGDLVLKQ 234 >D8J0E8.1 D8J0E8_HERSS Response regulator protein Length = 341 Score = 358 bits (919), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 172/220 (78%), Positives = 197/220 (89%) Query: 20 LPPADYKIMVLLVDDQAMVGEAIRRALLTESDIDFHFCPRAEDALGIAEKTQPTVILQDL 79 LP +YKIMVLLVDDQ MVGEAIRRAL E IDFHFC RAE+AL +AE+T+PTVILQDL Sbjct: 15 LPADEYKIMVLLVDDQPMVGEAIRRALANEPHIDFHFCTRAEEALTVAERTRPTVILQDL 74 Query: 80 VMPGVDGLTLVKQYRSNPLTMDIPIIVLSSKEDALVKRDAFATGVNDYMVKLPDTIELIA 139 VMPGVDG+TLV+QYR++ + +++PIIVLSS++DA+VKRDAFA G NDYMVKLPD IEL+A Sbjct: 75 VMPGVDGMTLVRQYRASAVLVNVPIIVLSSRDDAVVKRDAFAGGANDYMVKLPDVIELVA 134 Query: 140 RIRYHSRSYNNLLQRDAAYRALRESQQQLQKSNFELQRLTNTDGLTSIANRRYFDDYLNA 199 RIRYHSRSY NLLQRDAAY ALRESQQQLQKSNFELQRLTNTDGLT IANRRYFDDYL A Sbjct: 135 RIRYHSRSYINLLQRDAAYSALRESQQQLQKSNFELQRLTNTDGLTGIANRRYFDDYLGA 194 Query: 200 EWKRAKRVQQEISLLLIDVDNFKLYNDNYGHVAGNSXLRR 239 EW+RA+R +++LLLIDVD FKLYNDNYGHVAG++ LR+ Sbjct: 195 EWRRARRDGLDLALLLIDVDFFKLYNDNYGHVAGDAVLRQ 234 >Q46V29.1 Q46V29_CUPPJ Response regulator receiver modulated diguanylate cyclase Length = 359 Score = 334 bits (857), Expect = 8e-90, Method: Compositional matrix adjust. Identities = 155/215 (72%), Positives = 187/215 (86%) Query: 25 YKIMVLLVDDQAMVGEAIRRALLTESDIDFHFCPRAEDALGIAEKTQPTVILQDLVMPGV 84 Y +MVLLVDDQAM+GEA+RRAL +E DIDFH+C +DA+ +AE+T+PTVILQDLVMPGV Sbjct: 36 YPVMVLLVDDQAMIGEAVRRALASEPDIDFHYCATPDDAVAVAERTRPTVILQDLVMPGV 95 Query: 85 DGLTLVKQYRSNPLTMDIPIIVLSSKEDALVKRDAFATGVNDYMVKLPDTIELIARIRYH 144 DGLTLV++YR N T DIPIIVLS+KE+A +K AF+ G NDY+VKLPD+IEL+ARIRYH Sbjct: 96 DGLTLVRRYRDNAATRDIPIIVLSTKEEAAMKSAAFSAGANDYLVKLPDSIELVARIRYH 155 Query: 145 SRSYNNLLQRDAAYRALRESQQQLQKSNFELQRLTNTDGLTSIANRRYFDDYLNAEWKRA 204 SRSY NLLQRD AYRALR+SQQQL ++N ELQRLTN+DGLT ++NRRYFD+YLNAEWKRA Sbjct: 156 SRSYLNLLQRDEAYRALRQSQQQLLETNLELQRLTNSDGLTGLSNRRYFDEYLNAEWKRA 215 Query: 205 KRVQQEISLLLIDVDNFKLYNDNYGHVAGNSXLRR 239 +R Q +++LL+IDVD FK YND YGHVAG+ LRR Sbjct: 216 QREQSQLALLMIDVDAFKAYNDTYGHVAGDEVLRR 250 >Q1LG91.1 Q1LG91_RALME Putative response regulator of a two-component system Length = 335 Score = 332 bits (850), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 156/216 (72%), Positives = 187/216 (86%) Query: 24 DYKIMVLLVDDQAMVGEAIRRALLTESDIDFHFCPRAEDALGIAEKTQPTVILQDLVMPG 83 +Y MVLLVDDQA++GEAIRRAL +ESDIDFH+C + E+A+ +AE+T+PTVILQDLVMPG Sbjct: 15 EYPAMVLLVDDQAIIGEAIRRALASESDIDFHYCSQPEEAVTVAERTKPTVILQDLVMPG 74 Query: 84 VDGLTLVKQYRSNPLTMDIPIIVLSSKEDALVKRDAFATGVNDYMVKLPDTIELIARIRY 143 DGLTLV++YR N T DIPIIVLS+KE+ +K AFA G NDY+VKLPD+IELIARIRY Sbjct: 75 TDGLTLVRRYRENATTRDIPIIVLSTKEEPTMKSAAFAAGANDYLVKLPDSIELIARIRY 134 Query: 144 HSRSYNNLLQRDAAYRALRESQQQLQKSNFELQRLTNTDGLTSIANRRYFDDYLNAEWKR 203 HSRSY NLLQRD AYRALR+SQQQL ++N ELQRLTN+DGLTS++NRRYFD+YL AEWKR Sbjct: 135 HSRSYLNLLQRDEAYRALRQSQQQLLETNLELQRLTNSDGLTSLSNRRYFDEYLGAEWKR 194 Query: 204 AKRVQQEISLLLIDVDNFKLYNDNYGHVAGNSXLRR 239 A+R Q +++LL+IDVD FK YND YGHVAG+ LRR Sbjct: 195 AQREQTQLALLMIDVDAFKGYNDTYGHVAGDEVLRR 230 >A4JMT3.1 A4JMT3_BURVG Response regulator receiver modulated diguanylate cyclase Length = 371 Score = 325 bits (834), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 154/227 (67%), Positives = 185/227 (81%) Query: 13 DSDLGIRLPPADYKIMVLLVDDQAMVGEAIRRALLTESDIDFHFCPRAEDALGIAEKTQP 72 DS G R P AD MVLLVDDQ +V EAIRRAL+ E IDFH+CPR++DAL +A T+P Sbjct: 17 DSARGPRTPTADTPAMVLLVDDQTIVAEAIRRALVDEEGIDFHYCPRSDDALAVAIDTRP 76 Query: 73 TVILQDLVMPGVDGLTLVKQYRSNPLTMDIPIIVLSSKEDALVKRDAFATGVNDYMVKLP 132 TVILQDLVMPG DGL+LV YR+NP T D+PIIVLS++ED +K AFA G NDY+VKLP Sbjct: 77 TVILQDLVMPGADGLSLVSAYRANPATRDVPIIVLSTQEDPAIKSTAFACGANDYLVKLP 136 Query: 133 DTIELIARIRYHSRSYNNLLQRDAAYRALRESQQQLQKSNFELQRLTNTDGLTSIANRRY 192 D IEL+ARIRYHSRSY NLLQRD AYRALR+SQQQL ++N EL+RLT++DGLT ++NRRY Sbjct: 137 DRIELVARIRYHSRSYMNLLQRDEAYRALRQSQQQLLEANLELRRLTHSDGLTGLSNRRY 196 Query: 193 FDDYLNAEWKRAKRVQQEISLLLIDVDNFKLYNDNYGHVAGNSXLRR 239 D+YL AEW+R R + E+SLL+IDVDNFKLYND YGHV+G+ LR+ Sbjct: 197 LDEYLAAEWRRGARERSELSLLMIDVDNFKLYNDTYGHVSGDGVLRQ 243