BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0101.p (201 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A6STX9.1 A6STX9_JANMA Methyl-accepting chemotaxis protein 384 e-105 D8J0F4.1 D8J0F4_HERSS Methyl-accepting chemotaxis protein 362 2e-98 Q1LG85.1 Q1LG85_RALME Putative methyl-accepting chemotaxis senso... 337 5e-91 B3RBS4.1 B3RBS4_CUPTR Methyl-accepting chemotaxis sensory transd... 337 6e-91 Q46V23.1 Q46V23_CUPPJ Histidine kinase, HAMP region:Bacterial ch... 334 5e-90 >A6STX9.1 A6STX9_JANMA Methyl-accepting chemotaxis protein Length = 542 Score = 384 bits (986), Expect = e-105, Method: Compositional matrix adjust. Identities = 195/201 (97%), Positives = 199/201 (99%) Query: 1 MEDTMQDVMEAAGSVSGKLAILNEKAGNINQVVTTITKVADQTNLLSLNAAIEAEKAGEY 60 MEDTMQ VM+AAGSVSGKLAILNEKAGNINQVVTTITKVADQTNLLSLNAAIEAEKAGEY Sbjct: 342 MEDTMQAVMDAAGSVSGKLAILNEKAGNINQVVTTITKVADQTNLLSLNAAIEAEKAGEY 401 Query: 61 GRGFSVVATEIRRLADQTAVATYDIELMVKEIQSAVAAGVMGMDKFSDQVRRGMAEVQQV 120 GRGFSVVATEIRRLADQTAVATYDIELMVKEIQSAVAAGVMGMDKFSDQVRRGM EVQQV Sbjct: 402 GRGFSVVATEIRRLADQTAVATYDIELMVKEIQSAVAAGVMGMDKFSDQVRRGMQEVQQV 461 Query: 121 GTQLSQIIAQVQALAPRFQVVNEGMQAQANSAEQINQALLQLSEAAQQTVESLQQSSQAI 180 G+QLSQIIAQVQALAPRFQVVNEGMQAQANSAEQINQAL+QLSEAAQQTVESLQQSSQAI Sbjct: 462 GSQLSQIIAQVQALAPRFQVVNEGMQAQANSAEQINQALVQLSEAAQQTVESLQQSSQAI 521 Query: 181 DELNLVSNGLRNGVSRFKVSA 201 DEL+LVSNGLRNGVSRFKVSA Sbjct: 522 DELHLVSNGLRNGVSRFKVSA 542 >D8J0F4.1 D8J0F4_HERSS Methyl-accepting chemotaxis protein Length = 541 Score = 362 bits (928), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 183/199 (91%), Positives = 194/199 (97%) Query: 1 MEDTMQDVMEAAGSVSGKLAILNEKAGNINQVVTTITKVADQTNLLSLNAAIEAEKAGEY 60 MEDTMQ+VM+AAGSVS KLAILNEKAGNINQVVTTITKVADQTNLLSLNAAIEAEKAGE+ Sbjct: 341 MEDTMQNVMDAAGSVSAKLAILNEKAGNINQVVTTITKVADQTNLLSLNAAIEAEKAGEH 400 Query: 61 GRGFSVVATEIRRLADQTAVATYDIELMVKEIQSAVAAGVMGMDKFSDQVRRGMAEVQQV 120 GRGFSVVATEIRRLADQTAVATYDIE+MVKEIQSAVAAGVMGMDKFSDQVRRGM +VQ Sbjct: 401 GRGFSVVATEIRRLADQTAVATYDIEVMVKEIQSAVAAGVMGMDKFSDQVRRGMQDVQTA 460 Query: 121 GTQLSQIIAQVQALAPRFQVVNEGMQAQANSAEQINQALLQLSEAAQQTVESLQQSSQAI 180 G+QLSQIIAQVQALAPRFQ+VNEGMQAQANSAEQINQAL+QLSEAAQQTVESLQQSSQAI Sbjct: 461 GSQLSQIIAQVQALAPRFQIVNEGMQAQANSAEQINQALVQLSEAAQQTVESLQQSSQAI 520 Query: 181 DELNLVSNGLRNGVSRFKV 199 +EL++VSN LRNGVSRFKV Sbjct: 521 EELHVVSNELRNGVSRFKV 539 >Q1LG85.1 Q1LG85_RALME Putative methyl-accepting chemotaxis sensory transducer Length = 606 Score = 337 bits (864), Expect = 5e-91, Method: Compositional matrix adjust. Identities = 171/199 (85%), Positives = 184/199 (92%) Query: 1 MEDTMQDVMEAAGSVSGKLAILNEKAGNINQVVTTITKVADQTNLLSLNAAIEAEKAGEY 60 ME TM VMEAAGSV+ +LA LNEKAGNINQVVTTI +VADQTNLLSLNAAIEAEKAGEY Sbjct: 408 MEATMNHVMEAAGSVNARLATLNEKAGNINQVVTTIARVADQTNLLSLNAAIEAEKAGEY 467 Query: 61 GRGFSVVATEIRRLADQTAVATYDIELMVKEIQSAVAAGVMGMDKFSDQVRRGMAEVQQV 120 GRGFSVVATEIRRLADQTAVATYDIE +V+EIQSAVAAGVMGMDKFS++VRRGM+EV QV Sbjct: 468 GRGFSVVATEIRRLADQTAVATYDIEQIVREIQSAVAAGVMGMDKFSEEVRRGMSEVTQV 527 Query: 121 GTQLSQIIAQVQALAPRFQVVNEGMQAQANSAEQINQALLQLSEAAQQTVESLQQSSQAI 180 G QLSQII QVQ+LAPR Q+VNEGMQAQA AEQINQAL+QLSEAAQQTVESL+QSSQAI Sbjct: 528 GDQLSQIIGQVQSLAPRVQMVNEGMQAQAGGAEQINQALIQLSEAAQQTVESLRQSSQAI 587 Query: 181 DELNLVSNGLRNGVSRFKV 199 DEL LVSN LR+GVSRFKV Sbjct: 588 DELTLVSNELRSGVSRFKV 606 >B3RBS4.1 B3RBS4_CUPTR Methyl-accepting chemotaxis sensory transducer, Histidine kinase Length = 550 Score = 337 bits (864), Expect = 6e-91, Method: Compositional matrix adjust. Identities = 172/199 (86%), Positives = 185/199 (92%) Query: 1 MEDTMQDVMEAAGSVSGKLAILNEKAGNINQVVTTITKVADQTNLLSLNAAIEAEKAGEY 60 ME TMQ VMEAAGSV+ KLA LNEKAGNINQVVTTI KVADQTNLLSLNAAIEAEKAGEY Sbjct: 352 MEGTMQHVMEAAGSVNAKLATLNEKAGNINQVVTTIAKVADQTNLLSLNAAIEAEKAGEY 411 Query: 61 GRGFSVVATEIRRLADQTAVATYDIELMVKEIQSAVAAGVMGMDKFSDQVRRGMAEVQQV 120 GRGF+VVATEIRRLADQTAVATYDIE MV+EIQSAV+AGVMGMDKFS++VRRGM+EV QV Sbjct: 412 GRGFAVVATEIRRLADQTAVATYDIEQMVREIQSAVSAGVMGMDKFSEEVRRGMSEVTQV 471 Query: 121 GTQLSQIIAQVQALAPRFQVVNEGMQAQANSAEQINQALLQLSEAAQQTVESLQQSSQAI 180 G QLSQIIAQVQ+LAPR +VNEGMQAQA AEQINQAL+QLSEAAQQTVESL+QSSQAI Sbjct: 472 GDQLSQIIAQVQSLAPRVLMVNEGMQAQAGGAEQINQALMQLSEAAQQTVESLRQSSQAI 531 Query: 181 DELNLVSNGLRNGVSRFKV 199 DEL LV+N LR+GVSRFKV Sbjct: 532 DELTLVANDLRSGVSRFKV 550 >Q46V23.1 Q46V23_CUPPJ Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer Length = 539 Score = 334 bits (856), Expect = 5e-90, Method: Compositional matrix adjust. Identities = 171/199 (85%), Positives = 184/199 (92%) Query: 1 MEDTMQDVMEAAGSVSGKLAILNEKAGNINQVVTTITKVADQTNLLSLNAAIEAEKAGEY 60 ME TMQ VM+AAGSV+ KLA LNEKAGNINQVVTTI KVADQTNLLSLNAAIEAEKAGEY Sbjct: 341 MEATMQHVMDAAGSVNAKLATLNEKAGNINQVVTTIAKVADQTNLLSLNAAIEAEKAGEY 400 Query: 61 GRGFSVVATEIRRLADQTAVATYDIELMVKEIQSAVAAGVMGMDKFSDQVRRGMAEVQQV 120 GRGFSVVATEIRRLADQTAVATYDIE MV+EIQSAVAAGVMGMDKFS++VRRGM++V QV Sbjct: 401 GRGFSVVATEIRRLADQTAVATYDIEQMVREIQSAVAAGVMGMDKFSEEVRRGMSDVTQV 460 Query: 121 GTQLSQIIAQVQALAPRFQVVNEGMQAQANSAEQINQALLQLSEAAQQTVESLQQSSQAI 180 G QLSQII QVQ+LAPR +VNEGMQAQA AEQINQAL+QLSEAAQQTVESL+QSSQAI Sbjct: 461 GDQLSQIIGQVQSLAPRVLMVNEGMQAQAGGAEQINQALMQLSEAAQQTVESLRQSSQAI 520 Query: 181 DELNLVSNGLRNGVSRFKV 199 DEL LV+N LR+GVSRFKV Sbjct: 521 DELTLVANELRSGVSRFKV 539