BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0099.p         (182 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8J0F4.1 D8J0F4_HERSS Methyl-accepting chemotaxis protein             232   2e-59
A6STX9.1 A6STX9_JANMA Methyl-accepting chemotaxis protein             199   1e-49
D5NB52.1 D5NB52_9BURK Methyl-accepting chemotaxis sensory transd...   133   9e-30
B2T7T5.1 B2T7T5_BURPP Methyl-accepting chemotaxis sensory transd...   131   5e-29
B1JD48.1 B1JD48_PSEPW Methyl-accepting chemotaxis sensory transd...   121   4e-26

>D8J0F4.1 D8J0F4_HERSS Methyl-accepting chemotaxis protein
          Length = 541

 Score =  232 bits (592), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 119/180 (66%), Positives = 147/180 (81%), Gaps = 1/180 (0%)

Query: 1   MKNWTIKQRILGSFAVILILMAVMAGIAYTRLAKIDDEATSLRQDSTPGLYYSTMINAAW 60
           MKNWTIKQRILGSFA+IL+LMA+MAGI+   L +I++ AT+LRQDSTPGLYYSTMINAAW
Sbjct: 1   MKNWTIKQRILGSFALILLLMALMAGISAVNLGRIENGATALRQDSTPGLYYSTMINAAW 60

Query: 61  YENLLLGQQIAQIDDTEATRQADIALLRANSERLNHLQEEYEKTIFSPRDRALFDQFKQA 120
           YENLL+ QQIAQID  EA RQAD+ALLR N ERL+ LQE+Y+KTIFS  DR LFDQFK+ 
Sbjct: 61  YENLLMSQQIAQIDTNEAERQADLALLRRNGERLDRLQEDYDKTIFSDSDRKLFDQFKET 120

Query: 121 RMGYRQIQQDILRMDLSSPNAAVYKIISDQLRPAWRTGYVLTQKMVEINKTISDDSAHRI 180
           R  YR +  ++L+MD  S  A + K+ ++Q+RP WR GY LTQ+MV+ NK+I+DD+A RI
Sbjct: 121 RQKYRAMISEVLKMDF-SQRAPIDKMFNEQIRPQWRQGYQLTQRMVDTNKSIADDAASRI 179


>A6STX9.1 A6STX9_JANMA Methyl-accepting chemotaxis protein
          Length = 542

 Score =  199 bits (507), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 106/180 (58%), Positives = 140/180 (77%)

Query: 1   MKNWTIKQRILGSFAVILILMAVMAGIAYTRLAKIDDEATSLRQDSTPGLYYSTMINAAW 60
           MKNWTIKQRILGSFA+IL+LMA+MA +A+ RLAKIDD A+SL+ DSTPGL+ S MINA W
Sbjct: 1   MKNWTIKQRILGSFALILLLMALMAAVAWVRLAKIDDAASSLQDDSTPGLHASAMINAYW 60

Query: 61  YENLLLGQQIAQIDDTEATRQADIALLRANSERLNHLQEEYEKTIFSPRDRALFDQFKQA 120
           +EN +L QQIA+I D++A R+ D+A L+ N+E +N LQ +YE +IF+  D+A F++FKQA
Sbjct: 61  FENYMLIQQIAEIADSDANRKNDLAKLQVNNEHINALQVQYENSIFAADDKAQFEEFKQA 120

Query: 121 RMGYRQIQQDILRMDLSSPNAAVYKIISDQLRPAWRTGYVLTQKMVEINKTISDDSAHRI 180
           R  Y+QIQQ+ILR DLS  +  V+K+  +QLRPAW+  + L QK+ E NK I+D SA  I
Sbjct: 121 RAKYQQIQQEILRQDLSRTSPLVHKLFIEQLRPAWKDAHALIQKITENNKVIADQSAQHI 180


>D5NB52.1 D5NB52_9BURK Methyl-accepting chemotaxis sensory transducer
          Length = 541

 Score =  133 bits (335), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 74/182 (40%), Positives = 109/182 (59%), Gaps = 3/182 (1%)

Query: 1   MKNWTIKQRILGSFAVILILMAVMAGIAYTRLAKIDDEATSLRQDSTPGLYYSTMINAAW 60
           MK WTI+QRIL SF ++LI+M  MA +A+ +L  ID +A S +QDS PGLY +T + AAW
Sbjct: 1   MKQWTIRQRILCSFGIVLIVMLAMAIVAFQQLGGIDRDAKSQQQDSMPGLYNATAMRAAW 60

Query: 61  YENLLLGQQIAQIDDTEATRQADIALLRANSERLNHLQEEYEKTIFSPRDRALFDQFKQA 120
           +EN  + Q++  +D    + + D A L+   + L  +  +Y  TIF   DR +F+ F+Q 
Sbjct: 61  FENYSVTQRLIYVDADPDSVKRDTARLQETQQTLQKIINDYGATIFRDVDREVFNDFRQQ 120

Query: 121 RMGYRQIQQDIL-RMDLSSPNAAVYKIISDQLRPAWRTGYVLTQKMVEINKTISDDSAHR 179
           +  Y  IQ  +L  +  S  NAA  ++ + QL P W TG +  +K+VE NK  +D SA  
Sbjct: 121 QAQYLSIQASLLDALPASKDNAA--RVFNTQLTPLWETGRLTVRKLVENNKGYADQSAES 178

Query: 180 IR 181
           IR
Sbjct: 179 IR 180


>B2T7T5.1 B2T7T5_BURPP Methyl-accepting chemotaxis sensory transducer
          Length = 541

 Score =  131 bits (329), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 71/181 (39%), Positives = 104/181 (57%), Gaps = 1/181 (0%)

Query: 1   MKNWTIKQRILGSFAVILILMAVMAGIAYTRLAKIDDEATSLRQDSTPGLYYSTMINAAW 60
           MK WTI+QRIL SF ++LI+M  MA + + +L  ID +A S ++DS PGLYY+T + AAW
Sbjct: 1   MKQWTIRQRILCSFGIVLIVMLAMAIVTFEQLGGIDRDAKSQQEDSMPGLYYATAMRAAW 60

Query: 61  YENLLLGQQIAQIDDTEATRQADIALLRANSERLNHLQEEYEKTIFSPRDRALFDQFKQA 120
           +EN  + Q++  +D    + + D   L+   + L  L  +Y  TIF   DR  F+ F+Q 
Sbjct: 61  FENYTVTQRLVYVDADPESVKRDTERLQDTEQTLQKLLGDYGATIFRDNDRGFFNDFRQQ 120

Query: 121 RMGYRQIQQDILRMDLSSPNAAVYKIISDQLRPAWRTGYVLTQKMVEINKTISDDSAHRI 180
              Y  IQ  +L    SS   AV +I + QL P W  G +  +K+V+ NK  +D +A  I
Sbjct: 121 HTQYLPIQASLLNALPSSKENAV-RIFNTQLTPIWEAGRLSARKLVDNNKADADKAAESI 179

Query: 181 R 181
           R
Sbjct: 180 R 180


>B1JD48.1 B1JD48_PSEPW Methyl-accepting chemotaxis sensory transducer
          Length = 540

 Score =  121 bits (304), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 65/180 (36%), Positives = 96/180 (53%)

Query: 1   MKNWTIKQRILGSFAVILILMAVMAGIAYTRLAKIDDEATSLRQDSTPGLYYSTMINAAW 60
           MKNWT++QRIL SFAVI+ +M +M   AY+RL  I+    ++  DS PG+YYS+MI +AW
Sbjct: 1   MKNWTLRQRILASFAVIIAIMLLMVVAAYSRLVAIESAEEAVGTDSIPGVYYSSMIRSAW 60

Query: 61  YENLLLGQQIAQIDDTEATRQADIALLRANSERLNHLQEEYEKTIFSPRDRALFDQFKQA 120
            ++ +  QQ+  + D      AD+ L ++  ERL      Y+ TI    D+  FD F Q 
Sbjct: 61  VDSYVTSQQLVGLSDHREITAADMELFKSFDERLKQHLASYQGTIHDKDDQDHFDTFIQM 120

Query: 121 RMGYRQIQQDILRMDLSSPNAAVYKIISDQLRPAWRTGYVLTQKMVEINKTISDDSAHRI 180
              Y  I   ++        A   ++I D L PAW  G      M+E N+  +D + H+I
Sbjct: 121 EANYTHIIGQVIEAYRRHDYAEAERLIKDVLTPAWSEGRNHLNTMIEYNREAADAANHQI 180