BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0089.p (200 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IWF8.1 D8IWF8_HERSS TetR family transcription regulator protein 245 2e-63 C4XP52.1 C4XP52_DESMR TetR family transcriptional regulator 195 3e-48 C2U7Q5.1 C2U7Q5_BACCE Transcriptional regulator, TetR 145 5e-33 C2V5B3.1 C2V5B3_BACCE Transcriptional regulator, TetR 142 2e-32 C2XKJ8.1 C2XKJ8_BACCE Transcriptional regulator, TetR 142 2e-32 >D8IWF8.1 D8IWF8_HERSS TetR family transcription regulator protein Length = 239 Score = 245 bits (626), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 120/191 (62%), Positives = 146/191 (76%) Query: 1 MPDPATGRRRNPATHDAILDATCVLLDEIGFDKLSLEGVAARAGVGKATIYRWWPNKSSL 60 + DPATGRRRN +HDAILDAT V+L+EIGFDKLSLEGVAARAGVGKATIYRWWPNKS+L Sbjct: 42 ISDPATGRRRNAVSHDAILDATYVMLEEIGFDKLSLEGVAARAGVGKATIYRWWPNKSAL 101 Query: 61 AMEALLREVGPNVAFPETESARHDIENQIRKLAKLYRGKTGRVVCEMIGLSQFDAETMRL 120 AMEALLR V P ++ S+R DIE + +L++L RGK+GRVV EMI L+QF+ E+ R+ Sbjct: 102 AMEALLRAVEPMPPIGDSGSSRTDIELHMLQLSQLLRGKSGRVVREMIALAQFEPESKRI 161 Query: 121 FNDNYLDPRRNAAKQVLLRGIQNGEFKPDLDFDVIFDLLYGPIIQRMLMRHAGIDERHID 180 FNDNYL+PRR A VL RG Q GEF+ D D ++FDLLY P++QR+L IDER + Sbjct: 162 FNDNYLEPRRLALVSVLRRGAQRGEFREDADLSLVFDLLYAPLLQRLLTGQGDIDERQVQ 221 Query: 181 LHVALVLDGIT 191 + LVL IT Sbjct: 222 AQLKLVLGSIT 232 >C4XP52.1 C4XP52_DESMR TetR family transcriptional regulator Length = 197 Score = 195 bits (496), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 100/197 (50%), Positives = 131/197 (66%), Gaps = 6/197 (3%) Query: 1 MPDPAT----GRRRNPATHDAILDATCVLLDEIGFDKLSLEGVAARAGVGKATIYRWWPN 56 MP P+ GR R+ A AIL+A LL E+GF L++EG+AARAGVGKAT+YRWWP+ Sbjct: 1 MPAPSPKRPPGRPRSDAARQAILEAADGLLAEVGFAGLTMEGIAARAGVGKATVYRWWPS 60 Query: 57 KSSLAMEALLREVGPNVAFPETESARHDIENQIRKLAKLYRGKTGRVVCEMIGLSQFDAE 116 K ++AMEA L + P +A+P T+ A D+ Q+ +LA+ YRG GRVVCE+I L Q D E Sbjct: 61 KGAVAMEAFLAGLTPRIAYPHTDCAVDDVVTQMLRLAEAYRGAGGRVVCELIALGQADPE 120 Query: 117 TMRLFNDNYLDPRRNAAKQVLLRGIQNGEFKPDLDFDVIFDLLYGPIIQRMLMRHAGIDE 176 M +F D YL PRR A K+VL RG+ G+ +PD D D + D LY PI R+L+RH +D+ Sbjct: 121 AMAVFLDGYLLPRREAGKEVLRRGVAAGQIRPDADLDAMVDALYAPIFLRILLRHQPLDD 180 Query: 177 RHIDLHVA-LVLDGITP 192 I HVA LV G+ P Sbjct: 181 DFIR-HVADLVFSGLRP 196 >C2U7Q5.1 C2U7Q5_BACCE Transcriptional regulator, TetR Length = 200 Score = 145 bits (365), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 73/184 (39%), Positives = 106/184 (57%) Query: 7 GRRRNPATHDAILDATCVLLDEIGFDKLSLEGVAARAGVGKATIYRWWPNKSSLAMEALL 66 GR RN T AIL A+ LL E GF ++++ +A RA V KATIY+WWPNK+++ M+ L Sbjct: 14 GRPRNIETQKAILSASYELLLESGFKAVTVDKIADRAKVSKATIYKWWPNKAAVVMDGFL 73 Query: 67 REVGPNVAFPETESARHDIENQIRKLAKLYRGKTGRVVCEMIGLSQFDAETMRLFNDNYL 126 + P+T SA DI LA + G ++ E++G QFD++ + Y Sbjct: 74 SAAAARLPVPDTGSALTDILTHATSLASFLISREGTIITELVGEGQFDSKLAEEYRARYF 133 Query: 127 DPRRNAAKQVLLRGIQNGEFKPDLDFDVIFDLLYGPIIQRMLMRHAGIDERHIDLHVALV 186 PRR AKQ+L +GI+ GE K +LD D+ DL+YGPI R+L+ +DE ++ V Sbjct: 134 QPRRLQAKQLLEKGIKRGELKENLDVDLSIDLIYGPIFYRLLVTGEKLDESYVHDLVINA 193 Query: 187 LDGI 190 +GI Sbjct: 194 FEGI 197 >C2V5B3.1 C2V5B3_BACCE Transcriptional regulator, TetR Length = 200 Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 72/184 (39%), Positives = 106/184 (57%) Query: 7 GRRRNPATHDAILDATCVLLDEIGFDKLSLEGVAARAGVGKATIYRWWPNKSSLAMEALL 66 GR RN T AIL A+ LL E GF ++++ +A RA V KATIY+WWPNK+++ M+ L Sbjct: 14 GRPRNIETQKAILSASYELLLESGFKAVTVDKIADRAKVSKATIYKWWPNKAAVVMDGFL 73 Query: 67 REVGPNVAFPETESARHDIENQIRKLAKLYRGKTGRVVCEMIGLSQFDAETMRLFNDNYL 126 + P+T SA DI LA + G ++ E++G QFD++ + Y Sbjct: 74 SAAAARLPVPDTGSALTDILTHATSLANFLISREGTIITELVGEGQFDSKLAEEYRARYF 133 Query: 127 DPRRNAAKQVLLRGIQNGEFKPDLDFDVIFDLLYGPIIQRMLMRHAGIDERHIDLHVALV 186 PRR AKQ+L +GI+ GE K +LD D+ DL+YGPI R+L+ +D+ ++ V Sbjct: 134 QPRRLQAKQLLEKGIKRGELKENLDVDLSIDLIYGPIFYRLLVTGEKLDDSYVHDLVINA 193 Query: 187 LDGI 190 +GI Sbjct: 194 FEGI 197 >C2XKJ8.1 C2XKJ8_BACCE Transcriptional regulator, TetR Length = 195 Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 72/184 (39%), Positives = 107/184 (58%) Query: 7 GRRRNPATHDAILDATCVLLDEIGFDKLSLEGVAARAGVGKATIYRWWPNKSSLAMEALL 66 GR RN T AIL A+ LL E GF ++++ +A RA V KATIY+WWPNK+++ M+ L Sbjct: 9 GRPRNVETQKAILSASYELLLESGFKAVTVDKIADRAKVSKATIYKWWPNKAAVVMDGFL 68 Query: 67 REVGPNVAFPETESARHDIENQIRKLAKLYRGKTGRVVCEMIGLSQFDAETMRLFNDNYL 126 + P+T SA +DI L K + G ++ E++G QFD++ + Y Sbjct: 69 FAAAARLPIPDTGSALNDILIHATSLTKFLISREGTIITELVGEGQFDSKLAEEYRTRYF 128 Query: 127 DPRRNAAKQVLLRGIQNGEFKPDLDFDVIFDLLYGPIIQRMLMRHAGIDERHIDLHVALV 186 PRR AKQ+L +GI+ GE K +LD D+ DL+YGPI R+L+ +D+ ++ V Sbjct: 129 QPRRLQAKQLLEKGIKRGELKENLDVDLSIDLIYGPIFYRLLVTGEKLDDSYVHDLVINA 188 Query: 187 LDGI 190 +GI Sbjct: 189 FEGI 192