BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0073.p (380 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8J0J0.1 D8J0J0_HERSS Cytochrome bd-type quinol oxidase, subunit... 597 e-169 E4QJ81.1 E4QJ81_METS6 Cytochrome d ubiquinol oxidase, subunit II 476 e-132 C6X9F9.1 C6X9F9_METSD Cytochrome d ubiquinol oxidase, subunit II 476 e-132 E5ALY4.1 E5ALY4_BURRH Cytochrome d ubiquinol oxidase subunit II ... 458 e-127 C4LBM8.1 C4LBM8_TOLAT Cytochrome d ubiquinol oxidase, subunit II 452 e-125 >D8J0J0.1 D8J0J0_HERSS Cytochrome bd-type quinol oxidase, subunit 2, protein EC=1.10.3.- Length = 379 Score = 597 bits (1540), Expect = e-169, Method: Compositional matrix adjust. Identities = 294/380 (77%), Positives = 329/380 (86%), Gaps = 1/380 (0%) Query: 1 MIFDYETLKIIWWAFVGVLIIGFALTDGFDFGVGMMLPFVGKTDAERRVLINSIGPTWEG 60 MIFDYETLK+IWWAFVGVLIIGFALTDGFDFGVGMMLPF GK D ERR+LIN+IGPTWEG Sbjct: 1 MIFDYETLKLIWWAFVGVLIIGFALTDGFDFGVGMMLPFAGKNDTERRILINAIGPTWEG 60 Query: 61 NQTWFITAGGATFAAWPLVYATAFSGFYIALMVLLFSLFFRPVGFDYRSKVADPRWRNAW 120 NQTWFITAGGATFAAWPLVYATAFSGFYIALMVLLFSLFFRPVGFDYRSKVADPRWRNAW Sbjct: 61 NQTWFITAGGATFAAWPLVYATAFSGFYIALMVLLFSLFFRPVGFDYRSKVADPRWRNAW 120 Query: 121 DWGLFVGGIVPPLICGVAFGNLLLGVPFHYDDTMRVEYTGSFFELLNPFGLLAGVLSVAM 180 DWGLF+GG VPPLICGVAFGNLLLGVPFHYDDTMRVEYTGSFF LLNPFGLLAG+LSVAM Sbjct: 121 DWGLFIGGFVPPLICGVAFGNLLLGVPFHYDDTMRVEYTGSFFALLNPFGLLAGLLSVAM 180 Query: 181 LLTHGATFIMVKTEAAIAARARKIALWSALATLALFVAAGFWVAHGIDGYSITDMPSANS 240 LL HGA F VKTEAA+A R+RK + +AL T+ LF+A GFWVA + GY I MP ANS Sbjct: 181 LLMHGAAFAFVKTEAAVAERSRKTIIGAALVTVLLFIAGGFWVAQ-MPGYRIVSMPDANS 239 Query: 241 AFMPLAKTVEIVSGAWMDNYTRWPATRAIPIAAIAGLLLVLIFGAWRKARLAFIGSGIAV 300 AF PLAKTVE+V+GAW DNY +WP T+ P +AG +L + R ARLAFI S ++V Sbjct: 240 AFTPLAKTVEVVAGAWFDNYAKWPVTKLFPALGVAGAVLAALLALVRSARLAFIASALSV 299 Query: 301 AGIILTAATAMFPFIMPSSLDPRSSLTIWDSVSSHKTLGIMFWLVLFFVPLIMMYTAWVY 360 GIILTA ++FPF+MPSSLD +SSLT+WDSVSSHKTLG+MFW+VL F+PLI++YT WVY Sbjct: 300 TGIILTAGMSLFPFVMPSSLDAKSSLTLWDSVSSHKTLGLMFWMVLIFLPLIIVYTGWVY 359 Query: 361 RVMRGKVTLKHIADNEHTAY 380 RV++GKVT + I +NEHTAY Sbjct: 360 RVVKGKVTARDIHENEHTAY 379 >E4QJ81.1 E4QJ81_METS6 Cytochrome d ubiquinol oxidase, subunit II Length = 382 Score = 476 bits (1225), Expect = e-132, Method: Compositional matrix adjust. Identities = 236/379 (62%), Positives = 294/379 (77%) Query: 2 IFDYETLKIIWWAFVGVLIIGFALTDGFDFGVGMMLPFVGKTDAERRVLINSIGPTWEGN 61 I DY+TLK++WW FVGVL+IGFA+ DGFD GV +LPF+GKTD ERRV+INS+GP WEGN Sbjct: 4 IIDYQTLKLVWWLFVGVLLIGFAIMDGFDMGVTTLLPFLGKTDDERRVIINSVGPVWEGN 63 Query: 62 QTWFITAGGATFAAWPLVYATAFSGFYIALMVLLFSLFFRPVGFDYRSKVADPRWRNAWD 121 QTW ITAGGA FAAWPLVYA AFSG Y+AL+++LF+LFFRPVGFDYRSK+ P WRN+WD Sbjct: 64 QTWLITAGGAIFAAWPLVYAAAFSGLYVALLLVLFALFFRPVGFDYRSKMESPAWRNSWD 123 Query: 122 WGLFVGGIVPPLICGVAFGNLLLGVPFHYDDTMRVEYTGSFFELLNPFGLLAGVLSVAML 181 W LFVGG VP L+ GVAFGNLLLG+PFHYDDT+R YTGSF+ LLNPF LL G++S+ ML Sbjct: 124 WALFVGGFVPSLVFGVAFGNLLLGLPFHYDDTLRSFYTGSFWALLNPFALLCGLVSLTML 183 Query: 182 LTHGATFIMVKTEAAIAARARKIALWSALATLALFVAAGFWVAHGIDGYSITDMPSANSA 241 L HGA ++ ++TE + RA + A S + LF AG W+A GI+GY + +P N+A Sbjct: 184 LMHGAIYLQLRTEGVVQKRAARAARISGITCAILFALAGLWLAAGIEGYRLLQIPDVNNA 243 Query: 242 FMPLAKTVEIVSGAWMDNYTRWPATRAIPIAAIAGLLLVLIFGAWRKARLAFIGSGIAVA 301 PL KTVE V+GAW+ NY+ +P P AG+ L L+ A + R AF+ S +A+A Sbjct: 244 INPLHKTVEKVAGAWLSNYSTYPWMTLAPTVGFAGIALALLSAAKKWERCAFVFSSLALA 303 Query: 302 GIILTAATAMFPFIMPSSLDPRSSLTIWDSVSSHKTLGIMFWLVLFFVPLIMMYTAWVYR 361 GIILTA +MFPFIMPSS DP SSLT+WD+VSS KTLGIMF + L F+PLI++YT+WV+R Sbjct: 304 GIILTAGFSMFPFIMPSSTDPVSSLTLWDAVSSKKTLGIMFIVTLIFLPLILIYTSWVFR 363 Query: 362 VMRGKVTLKHIADNEHTAY 380 V+RGK+T++HI DN HTAY Sbjct: 364 VLRGKITVQHIRDNSHTAY 382 >C6X9F9.1 C6X9F9_METSD Cytochrome d ubiquinol oxidase, subunit II Length = 382 Score = 476 bits (1225), Expect = e-132, Method: Compositional matrix adjust. Identities = 237/379 (62%), Positives = 293/379 (77%) Query: 2 IFDYETLKIIWWAFVGVLIIGFALTDGFDFGVGMMLPFVGKTDAERRVLINSIGPTWEGN 61 I DY+TLK++WW FVGVL+IGFA+ DGFD GV +LPF+GKTD ERRV+INS+GP WEGN Sbjct: 4 IIDYQTLKLVWWLFVGVLLIGFAIMDGFDMGVTTLLPFLGKTDDERRVIINSVGPVWEGN 63 Query: 62 QTWFITAGGATFAAWPLVYATAFSGFYIALMVLLFSLFFRPVGFDYRSKVADPRWRNAWD 121 QTW ITAGGA FAAWPLVYA AFSG Y+AL+++LF+LFFRPVGFDYRSK+ P WRN WD Sbjct: 64 QTWLITAGGAIFAAWPLVYAAAFSGLYVALLLVLFALFFRPVGFDYRSKMESPAWRNGWD 123 Query: 122 WGLFVGGIVPPLICGVAFGNLLLGVPFHYDDTMRVEYTGSFFELLNPFGLLAGVLSVAML 181 W LFVGG VP L+ GVAFGNLLLG+PFHYDDT+R YTGSF+ LLNPF LL G++S+ ML Sbjct: 124 WALFVGGFVPSLVFGVAFGNLLLGLPFHYDDTLRSFYTGSFWALLNPFALLCGLVSLTML 183 Query: 182 LTHGATFIMVKTEAAIAARARKIALWSALATLALFVAAGFWVAHGIDGYSITDMPSANSA 241 L HGA ++ ++TE + RA + A S + LF AG W+A GI+GY + +P NSA Sbjct: 184 LMHGAIYLQLRTEGIVQKRAARAARISGITCAILFALAGLWLAAGIEGYRLLQIPDVNSA 243 Query: 242 FMPLAKTVEIVSGAWMDNYTRWPATRAIPIAAIAGLLLVLIFGAWRKARLAFIGSGIAVA 301 PL KTVE V+GAW+ NY+ +P P AG+ L L+ A + R AF+ S +A+A Sbjct: 244 INPLHKTVEKVAGAWLSNYSTYPWMTLAPTVGFAGIALALLSAAKKWERCAFVFSSLALA 303 Query: 302 GIILTAATAMFPFIMPSSLDPRSSLTIWDSVSSHKTLGIMFWLVLFFVPLIMMYTAWVYR 361 GIILTA +MFPFIMPSS DP SSLT+WD+VSS KTLGIMF + L F+PLI++YT+WV+R Sbjct: 304 GIILTAGFSMFPFIMPSSTDPVSSLTLWDAVSSKKTLGIMFIVTLIFLPLILIYTSWVFR 363 Query: 362 VMRGKVTLKHIADNEHTAY 380 V+RGK+T++HI DN HTAY Sbjct: 364 VLRGKITVQHIRDNSHTAY 382 >E5ALY4.1 E5ALY4_BURRH Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) EC=1.10.3.- Length = 386 Score = 458 bits (1178), Expect = e-127, Method: Compositional matrix adjust. Identities = 223/379 (58%), Positives = 275/379 (72%) Query: 2 IFDYETLKIIWWAFVGVLIIGFALTDGFDFGVGMMLPFVGKTDAERRVLINSIGPTWEGN 61 +FDY TLK+IWW +GVL++GFALTDGFD GVG +LPF+GKTD ERRV+IN+IGPTWEGN Sbjct: 8 MFDYPTLKVIWWVLIGVLLLGFALTDGFDMGVGALLPFIGKTDTERRVIINAIGPTWEGN 67 Query: 62 QTWFITAGGATFAAWPLVYATAFSGFYIALMVLLFSLFFRPVGFDYRSKVADPRWRNAWD 121 Q W ITAGGA FAAWPLVYA +FSGFY A++++LF+LF RPVGF+YR+K DPRWR +WD Sbjct: 68 QVWLITAGGAMFAAWPLVYAASFSGFYFAMLLVLFALFMRPVGFEYRAKRDDPRWRTSWD 127 Query: 122 WGLFVGGIVPPLICGVAFGNLLLGVPFHYDDTMRVEYTGSFFELLNPFGLLAGVLSVAML 181 W LF G +P L+ GVAFGNLL GVPF +DD +RV Y G FF LLNPF +L G +SV ML Sbjct: 128 WALFAGSAIPALVFGVAFGNLLQGVPFRFDDELRVSYHGGFFALLNPFAVLCGAVSVGML 187 Query: 182 LTHGATFIMVKTEAAIAARARKIALWSALATLALFVAAGFWVAHGIDGYSITDMPSANSA 241 + HGA F+ +KTE AIA RA + ++L T+ LF+ AG +VA I G+ IT ++ Sbjct: 188 VAHGAAFLRIKTEGAIARRASHVLRIASLITVVLFIMAGIFVATRITGFEITRAAPLDAL 247 Query: 242 FMPLAKTVEIVSGAWMDNYTRWPATRAIPIAAIAGLLLVLIFGAWRKARLAFIGSGIAVA 301 PL K V G WM NY +P P I +L L + R L FI +G+ V Sbjct: 248 ANPLLKRVAAAPGLWMANYIAYPWMMLAPALGIVAGVLALALASSRFTMLCFIMTGLLVT 307 Query: 302 GIILTAATAMFPFIMPSSLDPRSSLTIWDSVSSHKTLGIMFWLVLFFVPLIMMYTAWVYR 361 G+ILTA +MFPFIMPSSLDP SSLT+WDS SSH+TLGIM +V+ FVPLIM+YT+WVYR Sbjct: 308 GVILTAGFSMFPFIMPSSLDPASSLTLWDSTSSHRTLGIMLIVVIVFVPLIMLYTSWVYR 367 Query: 362 VMRGKVTLKHIADNEHTAY 380 VMRGKVT + + N H+ Y Sbjct: 368 VMRGKVTEQGVQSNTHSMY 386 >C4LBM8.1 C4LBM8_TOLAT Cytochrome d ubiquinol oxidase, subunit II Length = 379 Score = 452 bits (1163), Expect = e-125, Method: Compositional matrix adjust. Identities = 214/379 (56%), Positives = 279/379 (73%) Query: 2 IFDYETLKIIWWAFVGVLIIGFALTDGFDFGVGMMLPFVGKTDAERRVLINSIGPTWEGN 61 +FDYE L++IWW +GVL+IGFA+TDGFD GVG +LP +GKTD ERRV+IN+I P W+GN Sbjct: 1 MFDYEVLRLIWWVLIGVLLIGFAVTDGFDMGVGALLPILGKTDTERRVMINTIAPHWDGN 60 Query: 62 QTWFITAGGATFAAWPLVYATAFSGFYIALMVLLFSLFFRPVGFDYRSKVADPRWRNAWD 121 Q W ITAGGA FAAWP+VYATAFSGFYIA+++ L +LFFRPVGFDYRSK+ +PRWRN+WD Sbjct: 61 QVWLITAGGALFAAWPMVYATAFSGFYIAMVLTLMALFFRPVGFDYRSKLENPRWRNSWD 120 Query: 122 WGLFVGGIVPPLICGVAFGNLLLGVPFHYDDTMRVEYTGSFFELLNPFGLLAGVLSVAML 181 W LF+GG VPP + GVAFGNLL GVPF D MR Y G+FF+LLNPFGLLAG++S+ M Sbjct: 121 WCLFIGGFVPPTVIGVAFGNLLQGVPFSVDTMMRTTYEGTFFQLLNPFGLLAGLVSLFMF 180 Query: 182 LTHGATFIMVKTEAAIAARARKIALWSALATLALFVAAGFWVAHGIDGYSITDMPSANSA 241 +T GAT++M+KTE + RARK A+ +AL LF AG+WVA+GIDGY+I +A Sbjct: 181 VTQGATWLMMKTEGDLQDRARKTAMLTALLVFVLFAVAGYWVANGIDGYTIVKFAGTEAA 240 Query: 242 FMPLAKTVEIVSGAWMDNYTRWPATRAIPIAAIAGLLLVLIFGAWRKARLAFIGSGIAVA 301 PL K V + +GAWM NY ++P A P+ +A +L ++ + +A AF+ S + +A Sbjct: 241 SNPLNKDVAVSAGAWMQNYAQYPWMMAAPLVGLAMAVLTILAARFDRAGFAFLFSSLMIA 300 Query: 302 GIILTAATAMFPFIMPSSLDPRSSLTIWDSVSSHKTLGIMFWLVLFFVPLIMMYTAWVYR 361 G+ILTA +MFPFIMPSSL+P SLT+WD+ SS TL +M + FVP I+ YT W Y Sbjct: 301 GVILTAGFSMFPFIMPSSLNPAQSLTMWDATSSKNTLTVMTFAAAIFVPTILGYTIWTYI 360 Query: 362 VMRGKVTLKHIADNEHTAY 380 M G+V+ + + N+H+ Y Sbjct: 361 KMFGRVSNQFVEKNKHSVY 379