BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0049.p (257 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value F1VXB6.1 F1VXB6_9BURK Branched-chain amino acid transport protein 328 5e-88 D1C901.1 D1C901_SPHTD Inner-membrane translocator 202 3e-50 Q4FMW3.1 Q4FMW3_PELUB Branched-chain amino acid transport protein 200 2e-49 B8IJ91.1 B8IJ91_METNO Inner-membrane translocator 184 8e-45 A4YR34.1 A4YR34_BRASO Putative ABC transporter permiase component 182 6e-44 >F1VXB6.1 F1VXB6_9BURK Branched-chain amino acid transport protein Length = 287 Score = 328 bits (841), Expect = 5e-88, Method: Compositional matrix adjust. Identities = 159/192 (82%), Positives = 181/192 (94%) Query: 4 DILLQTLASGLLIGLIYALVAIGLTLIFGVMDIVNFAHGEFLMFGMYSSFWLFALYALDP 63 +IL+QTL SGLLIGLIYALVAIGLT+IFGVMDI+NF+HGEFLMFGMYSSFW+++LYALDP Sbjct: 3 EILVQTLVSGLLIGLIYALVAIGLTMIFGVMDIINFSHGEFLMFGMYSSFWMYSLYALDP 62 Query: 64 IFTLPLTALFLFGLGALLYKLVIRKITNAPMVSQIFTTFGLMILFRGIAQFFWKADFRTI 123 +FTLPLTALFLF LG ++YKLVI KITNAPMVSQIFTTFGLM+LFRGIAQF WK DFRTI Sbjct: 63 MFTLPLTALFLFALGVVVYKLVISKITNAPMVSQIFTTFGLMLLFRGIAQFLWKPDFRTI 122 Query: 124 ENSMVAGHVSLGGIQIGSPQLTAGLGAIVVTGVIYLFLTRTKLGAALEATAADKEAAQLM 183 E SMV+GH SL GIQ+G+PQLTAG+GAI+VT +YLF+T+T+LGAALEATAADKEAA+LM Sbjct: 123 EKSMVSGHFSLAGIQVGTPQLTAGVGAILVTVGVYLFITKTRLGAALEATAADKEAARLM 182 Query: 184 GIDSQKMFALAW 195 GIDSQKMFALAW Sbjct: 183 GIDSQKMFALAW 194 >D1C901.1 D1C901_SPHTD Inner-membrane translocator Length = 294 Score = 202 bits (515), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 107/204 (52%), Positives = 144/204 (70%), Gaps = 4/204 (1%) Query: 1 MTWDILLQTLASGLLIGLIYALVAIGLTLIFGVMDIVNFAHGEFLMFGMYSSFWLFALYA 60 M +LLQ L +GLLIG++YAL+++GLTLIFG+M+IVNFAHGEFLM MY++FW L + Sbjct: 1 MDTTLLLQALTNGLLIGMVYALISVGLTLIFGLMEIVNFAHGEFLMLAMYAAFWASVLLS 60 Query: 61 LDPIFTLPLTALFLFGLGALLYKLVIRKITNAPMVSQIFTTFGLMILFRGIAQFFWKADF 120 LDP+ +LPLT L LG Y+ +I I +APM++QIF TFGL + RG+AQ+ W +F Sbjct: 61 LDPMVSLPLTVGGLGLLGLATYRGIIAHILHAPMLAQIFATFGLGLFLRGLAQYLWTPNF 120 Query: 121 RTIEN----SMVAGHVSLGGIQIGSPQLTAGLGAIVVTGVIYLFLTRTKLGAALEATAAD 176 RTIE + G V++GG+ +G PQ+ A + A V +YLF+TRT++G AL+A A D Sbjct: 121 RTIERPWLGQISGGTVNIGGVFLGVPQIAAAILAGVAFVALYLFITRTRVGLALQAVAED 180 Query: 177 KEAAQLMGIDSQKMFALAWGVGAA 200 K A LMGIDS +MFAL W +G A Sbjct: 181 KSTAGLMGIDSNRMFALGWVLGGA 204 >Q4FMW3.1 Q4FMW3_PELUB Branched-chain amino acid transport protein Length = 279 Score = 200 bits (508), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 99/189 (52%), Positives = 136/189 (71%) Query: 10 LASGLLIGLIYALVAIGLTLIFGVMDIVNFAHGEFLMFGMYSSFWLFALYALDPIFTLPL 69 + +GL++GLIYAL+A GL+LIFG+MDIVNFAHGE LM M+SSFWL++L+ LDPIF++P+ Sbjct: 1 MVTGLMMGLIYALIAAGLSLIFGLMDIVNFAHGEHLMLSMFSSFWLWSLFGLDPIFSIPI 60 Query: 70 TALFLFGLGALLYKLVIRKITNAPMVSQIFTTFGLMILFRGIAQFFWKADFRTIENSMVA 129 T L + G L + +IR I A M+ QI TFGL I R IAQF W DFR I+ ++ Sbjct: 61 TILLMAFCGVLTHYFLIRYILKAKMLIQICATFGLSIFIRSIAQFLWTPDFRNIDKPLLE 120 Query: 130 GHVSLGGIQIGSPQLTAGLGAIVVTGVIYLFLTRTKLGAALEATAADKEAAQLMGIDSQK 189 G + + G+ IG PQL A L +V ++YLF+T+T+ G AL+ATA D+ AA+++GI S K Sbjct: 121 GRLEISGMFIGQPQLIASLVCLVAFILLYLFVTKTETGLALQATAQDRHAAEILGIPSDK 180 Query: 190 MFALAWGVG 198 MFA+ W +G Sbjct: 181 MFAIGWAIG 189 >B8IJ91.1 B8IJ91_METNO Inner-membrane translocator Length = 292 Score = 184 bits (468), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 101/205 (49%), Positives = 137/205 (66%), Gaps = 6/205 (2%) Query: 1 MTWDILLQTLASGLLIGLIYALVAIGLTLIFGVMDIVNFAHGEFLMFGMYSSFWLFALYA 60 MT L Q LASGLL+GLIYAL+A+GL+LIFG+MD+VNFAHGEFLM MY++F+L Sbjct: 1 MTTQALAQVLASGLLMGLIYALIAVGLSLIFGLMDVVNFAHGEFLMIAMYATFFLVLATH 60 Query: 61 LDPIFTLPLTALFLFGLGALLY----KLVIRKITNAPMVSQIFTTFGLMILFRGIAQFFW 116 LDP+ +PL A LF LGA Y + +R N MV QIF TFGL IL +G AQ+ + Sbjct: 61 LDPVVLMPLVAALLFALGATAYLGIVRFAMRAKANQGMV-QIFATFGLAILLQGAAQYLF 119 Query: 117 KADFRTIENSMVAGH-VSLGGIQIGSPQLTAGLGAIVVTGVIYLFLTRTKLGAALEATAA 175 D+R ++N+ + GH + LGG+ + PQ+ ++ G ++L ++RT G ALEAT Sbjct: 120 TPDYRNVQNTWLGGHTLDLGGVFLPWPQIFGAAVSLAAFGGLHLLMSRTDFGRALEATRE 179 Query: 176 DKEAAQLMGIDSQKMFALAWGVGAA 200 D+ A L+GID ++FAL WG+GAA Sbjct: 180 DQGAVALVGIDRNRVFALGWGLGAA 204 >A4YR34.1 A4YR34_BRASO Putative ABC transporter permiase component Length = 277 Score = 182 bits (461), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 97/190 (51%), Positives = 131/190 (68%), Gaps = 6/190 (3%) Query: 16 IGLIYALVAIGLTLIFGVMDIVNFAHGEFLMFGMYSSFWLFALYALDPIFTLPLTALFLF 75 +GL+Y L+A+GL LIFG+MD+VNFAHGEFLM MY++F+LFA +ALDP+ + P+ A LF Sbjct: 1 MGLLYGLIAVGLALIFGLMDVVNFAHGEFLMIAMYATFFLFAYFALDPLLSAPIVAAGLF 60 Query: 76 GLGALLYKLV----IRKITNAPMVSQIFTTFGLMILFRGIAQFFWKADFRTIENSMVAGH 131 GA++Y L+ +R N MV QIF+TFGL +L RG+AQ+F+ D+R+I +S + G Sbjct: 61 VFGAVVYLLIVRFAVRAKANTGMV-QIFSTFGLAVLMRGVAQYFFTPDYRSIPHSWLGGK 119 Query: 132 -VSLGGIQIGSPQLTAGLGAIVVTGVIYLFLTRTKLGAALEATAADKEAAQLMGIDSQKM 190 +S+ GI + PQL L AI +Y F+ RT G ALEAT D A L+GID K+ Sbjct: 120 TISIAGIYLPQPQLVGALIAIAAFAGLYFFIHRTDFGRALEATREDAGAVALVGIDKNKV 179 Query: 191 FALAWGVGAA 200 FAL WG+GAA Sbjct: 180 FALGWGLGAA 189