BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0024.p (268 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value F1VYU8.1 F1VYU8_9BURK Vitamin B12 ABC transporter, B12-binding c... 182 4e-44 E8YFM0.1 E8YFM0_9BURK Periplasmic binding protein 145 8e-33 D5W4K1.1 D5W4K1_BURSC Periplasmic binding protein 145 8e-33 B4WZ20.1 B4WZ20_9GAMM Periplasmic binding protein 145 8e-33 C4KSM4.1 C4KSM4_BURPS Cobalamin ABC transporter, periplasmic cob... 144 9e-33 >F1VYU8.1 F1VYU8_9BURK Vitamin B12 ABC transporter, B12-binding component BtuF Length = 292 Score = 182 bits (462), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 119/290 (41%), Positives = 163/290 (56%), Gaps = 41/290 (14%) Query: 15 VLALLCAGNAA----ASITVTDDFGNDIRLDKPARRIVSLSPHTTELLYAAGAGPYVIGV 70 ++ALL A + A A ++ TDD G+ IRLD PARRI+SL+PH TELL+AAGAG ++GV Sbjct: 5 LIALLLATSGALAEAAPVSATDDAGHPIRLDAPARRIISLAPHVTELLFAAGAGARLVGV 64 Query: 71 SNYSNYPPAALQAVSVGRISAVDIEKILTLKPDLILAWRSGNSAXQSRRRFPRALASAKP 130 S+YS++PPAA SVG +A+DIE+I+ LKPDL++AW SGNSA Q R RAL Sbjct: 65 SDYSDFPPAAKAIASVGGAAALDIERIVMLKPDLVVAWGSGNSASQLARL--RALGITVF 122 Query: 131 QLSRPQAGQRVLSDLGTPADDAQRQAHG----VDGAAHANT--------DAAPLLHTVGR 178 S P+ + S L A A +A G +D A T + P+ + + R Sbjct: 123 D-SEPRDFAAIASSLERLATLAGSEATGRAAAIDFRARLQTLTTTYQQRASVPVFYQIWR 181 Query: 179 RRLRTLFHRAAKP----------------------GSQSVIAANPEAILAPDDAKDHPLD 216 L TL ++ G+++V+ ANPE IL D + L Sbjct: 182 APLMTLNGQSMVSTAIRLCGGNNIFAQLPQLAPVIGTEAVLQANPEVILTGGDDEAAALA 241 Query: 217 EWRQFGKMKAVAAGNLFTVNADWLNRPGPRVLDATEEVCKILDTVRSRRP 266 +WR+F + AV NLF +NADWL R GPR+L+ TE +C+ LDT R +RP Sbjct: 242 DWRRFPSLLAVQRNNLFVINADWLARSGPRLLEGTELLCRQLDTARRKRP 291 >E8YFM0.1 E8YFM0_9BURK Periplasmic binding protein Length = 309 Score = 145 bits (365), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 103/281 (36%), Positives = 149/281 (53%), Gaps = 37/281 (13%) Query: 24 AAASITVTDDFGNDIRLDKPARRIVSLSPHTTELLYAAGAGPYVIGVSNYSNYPPAALQA 83 A A ITVTDD G + L A+R++SL+PH TELLYAAG ++G +YS+YPP A Q Sbjct: 26 ARAGITVTDDTGAAVTLPAAAQRVISLAPHVTELLYAAGGASKMVGAVSYSDYPPEAKQL 85 Query: 84 VSVGRISAVDIEKILTLKPDLILAWRSGNSAXQSR--RRFPRALASAKPQ------LSRP 135 VG ++D+E+I+ LKPDLI+ WR GN+ Q R L ++P +S Sbjct: 86 PRVGDNKSLDLERIVALKPDLIVVWRHGNAQRQLERVRELHIPLFFSEPHRLDDIAVSLT 145 Query: 136 QAGQRV-LSDLGTPADDAQRQAHGVDGAAHANTDAAPLLHTVGRRRLRTL---------- 184 + GQ + S PA A R+ A +A A + + V + L TL Sbjct: 146 KLGQLLGTSSTADPAAAAYRRDIANLRAQYAKRPAVSVFYQVWDQPLMTLNGEHMVSDVI 205 Query: 185 -------FHRAAKP-----GSQSVIAANPEAIL--APDDAK-DHPLDE---WRQFGKMKA 226 A +P +++V+AANPEAI+ AP K D PL + WR + ++ A Sbjct: 206 ELCGGRNVFAALQPLVPTVSTEAVLAANPEAIVTAAPGATKPDTPLPQLGAWRAWPRLLA 265 Query: 227 VAAGNLFTVNADWLNRPGPRVLDATEEVCKILDTVRSRRPP 267 VA NLF ++ D +NRP PR++ +++C+ L+ RSRR P Sbjct: 266 VADNNLFAIDGDLINRPSPRIVQGAKQMCEDLELARSRRKP 306 >D5W4K1.1 D5W4K1_BURSC Periplasmic binding protein Length = 316 Score = 145 bits (365), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 100/283 (35%), Positives = 145/283 (51%), Gaps = 37/283 (13%) Query: 19 LCAGNAAASITVTDDFGNDIRLDKPARRIVSLSPHTTELLYAAGAGPYVIGVSNYSNYPP 78 + A +A ASITVTDD G + L PA+R++SL+PH TELLYAAG GP ++G +YS+YPP Sbjct: 28 VTALSAHASITVTDDSGATVTLAAPAQRVISLAPHVTELLYAAGGGPKMVGAVSYSDYPP 87 Query: 79 AALQAVSVGRISAVDIEKILTLKPDLILAWRSGNSAXQSR--RRFPRALASAKPQ----- 131 A Q VG A+D+E+I+ LKPDLI+ WR GN+ Q R L ++P+ Sbjct: 88 EAKQLPRVGDNKALDLERIVALKPDLIVVWRHGNAQHQLERLRELHVPLFFSEPRRLDDI 147 Query: 132 -LSRPQAGQRV-LSDLGTPADDAQRQAHGVDGAAHANTDAAPLLHTVGRRRLRTLFHR-- 187 +S + G+ + S A A R+ A +AN + + V R L TL Sbjct: 148 AVSLTKLGRLLGTSTSADAAAAAYREDIARLRARYANRPVVSVFYQVWDRPLMTLNDEHM 207 Query: 188 --------------------AAKPGSQSVIAANPEAILAPDDAKDHP------LDEWRQF 221 +++V+AANP+AI+ P LD WR + Sbjct: 208 ISDVITLCGGRNVFADLQPLVPTVSTEAVLAANPQAIVTAASGATQPDTTLPQLDTWRAW 267 Query: 222 GKMKAVAAGNLFTVNADWLNRPGPRVLDATEEVCKILDTVRSR 264 ++ AVA NLF ++ D +NRP PR+ ++C+ L+ RSR Sbjct: 268 PRLAAVANNNLFAIDGDLINRPAPRIAQGARQLCEDLELARSR 310 >B4WZ20.1 B4WZ20_9GAMM Periplasmic binding protein Length = 293 Score = 145 bits (365), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 104/281 (37%), Positives = 142/281 (50%), Gaps = 43/281 (15%) Query: 23 NAAASITVTDDFGNDIRLDKPARRIVSLSPHTTELLYAAGAGPYVIGVSNYSNYPPAALQ 82 A A++ VTDD ++ L+KPA RI++LSP TELL+AAGAG ++G ++S+YPPAA + Sbjct: 18 TAMAAVCVTDDTQRELCLEKPASRIIALSPGATELLFAAGAGEQMVGAVSFSDYPPAAKK 77 Query: 83 AVSVGRISAVDIEKILTLKPDLILAWRSGNSAXQSRR----------RFPRALASAKPQL 132 VG +D+E +L LKPDLI+AW SGN Q R PR A L Sbjct: 78 LPRVGSYKRLDLEAVLALKPDLIVAWHSGNPLPQVERLQALGLPVYYSEPRRFADVSTTL 137 Query: 133 SRPQ--AGQRVLSDLGTPADDAQRQAHGVDGAAHANTDAAPL----------LHTVGRRR 180 R AG +G A DA R G+D DAA + L TV R Sbjct: 138 ERFARLAGT---EQVGQGAADAFRA--GIDVLRERYADAAKVSVFYQVWEEPLMTVNREH 192 Query: 181 LRT--------------LFHRAAKPGSQSVIAANPEAILAPDDAKDHP--LDEWRQFGKM 224 L + L A + +SV+ NP+AI+A +D P LD WRQF + Sbjct: 193 LISEAIQVCGGVNVFADLPTLAPRISKESVLEKNPQAIVAGGMGEDDPGWLDPWRQFATL 252 Query: 225 KAVAAGNLFTVNADWLNRPGPRVLDATEEVCKILDTVRSRR 265 +AV NLF V+ L RP P++L +C+ LD+ R+R+ Sbjct: 253 QAVKNDNLFFVSPSTLQRPTPQMLTGARTLCRHLDSARARQ 293 >C4KSM4.1 C4KSM4_BURPS Cobalamin ABC transporter, periplasmic cobalamin-binding protein Length = 310 Score = 144 bits (364), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 105/283 (37%), Positives = 143/283 (50%), Gaps = 43/283 (15%) Query: 24 AAASITVTDDFGNDIRLDKPARRIVSLSPHTTELLYAAGAGPYVIGVSNYSNYPPAALQA 83 A A I VTDD G+ I L PARR+VSL+PH TEL+YAAG G ++G +YS+YPPAA Sbjct: 29 AHADIAVTDDAGHAITLAAPARRVVSLAPHVTELIYAAGGGAKLVGAVSYSDYPPAAKAI 88 Query: 84 VSVGRISAVDIEKILTLKPDLILAWRSGNSAXQSRRRFPRALASAKPQLSRPQAGQRVLS 143 VG A+D+E+I LKPDLI+ WR GN+ ++ R RAL S P+ V + Sbjct: 89 ARVGSNKALDLERIAALKPDLIVVWRHGNAEHETERL--RAL-GIPLYFSEPRHLDDVAA 145 Query: 144 ------------DLGTPADDAQRQAHGVDGAAHANTDAA---------PLL-----HTV- 176 ++ + A DA R+ A +A+ PL+ H V Sbjct: 146 SLDKLGLLLGTHEIASAAADAYRRRIAQLRARYADKPPVTVFFQAWDKPLITLNGDHIVS 205 Query: 177 -------GRRRLRTLFHRAAKPGSQSVIAANPEAIL------APDDAKDHPLDEWRQFGK 223 GR L A ++V+AANPEAI+ +P WR + K Sbjct: 206 DVIALCGGRNVFARLQPVAPSVTDEAVLAANPEAIVTTAAGASPTRDALPDFTRWRAWPK 265 Query: 224 MKAVAAGNLFTVNADWLNRPGPRVLDATEEVCKILDTVRSRRP 266 + AVA GNLF ++ D L RP PR+ E++C+ LD R+RRP Sbjct: 266 LTAVARGNLFAIDGDLLTRPAPRIAQGAEQLCRDLDVARARRP 308