BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0016.p (469 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8J0M4.1 D8J0M4_HERSS Chemotaxis CheA protein EC=2.7.3.- 717 0.0 A6SWX8.1 A6SWX8_JANMA CheA chemotaxis protein EC=2.7.3.- 638 0.0 A4G3P8.1 A4G3P8_HERAR Putative chemotaxis protein CheA 629 e-178 F1W3S9.1 F1W3S9_9BURK Signal transduction histidine kinase CheA 616 e-174 D5CMV5.1 D5CMV5_SIDLE CheA signal transduction histidine kinase 324 2e-86 >D8J0M4.1 D8J0M4_HERSS Chemotaxis CheA protein EC=2.7.3.- Length = 638 Score = 717 bits (1851), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/457 (82%), Positives = 400/457 (87%), Gaps = 1/457 (0%) Query: 5 DGSLDWNALYQAVSGGTGEVAPVAAAPVQAAPAEAESSSGHPKSLPSATPTPKP-AAAPV 63 +G L+W ALYQA+ G APVA A +AAP A S+ + + +P AAAP Sbjct: 174 NGELNWPALYQALVPGAAAAAPVAGAVAEAAPVAAASAPAAAVAAAAPAADGEPKAAAPA 233 Query: 64 QARRATDNQPGNAKEESIRIDAGKLDALLEVAGESVQAANQAAVLLEKLQQFKFEGTAAS 123 Q R + PG AKEESIRIDAGKLDALLEVAGESVQAANQAAVLLEKLQQFKFEGTAA+ Sbjct: 234 QHNRRASDSPGGAKEESIRIDAGKLDALLEVAGESVQAANQAAVLLEKLQQFKFEGTAAA 293 Query: 124 LMSTLAETLGRASRYSSELQRATLSTRMQPVGRLFQKFPRLVRELAKDLGKDVDLAISGA 183 LMSTLAETLGRASRYSSELQRATLSTRMQPVGRLFQKFPRLVRELAKDLGKDVDL I+GA Sbjct: 294 LMSTLAETLGRASRYSSELQRATLSTRMQPVGRLFQKFPRLVRELAKDLGKDVDLVITGA 353 Query: 184 ETEVDRVVVDSLYDPLVHMLRNSLDHGIETDRGAAGKPNKATISLKAWQEASSVMIEIFD 243 ETEVDRVVVDSLYDPLVHMLRNSLDHGIE DR AAGKP KATISL AWQ SSVMIE+FD Sbjct: 354 ETEVDRVVVDSLYDPLVHMLRNSLDHGIEVDRVAAGKPTKATISLNAWQAGSSVMIEVFD 413 Query: 244 DGKGMDPDFLRKKAIGKGLIGEHEAQSHDEALQLVFLPGFSTKEVASSVSGRGVGMDVVK 303 DGKGMDPD LR KA+ KGLI EH+A + DEALQLVFLPGFSTKEVASSVSGRGVGMDVVK Sbjct: 414 DGKGMDPDMLRSKALAKGLINEHQALTADEALQLVFLPGFSTKEVASSVSGRGVGMDVVK 473 Query: 304 TAVEKHRGTIRIDSTLGVGTRFSIRLPIELSIIPTMLVRTAGAALALPMAVVERVVELPA 363 TAVEKHRGTIRI+ST+G GT+FSIRLPIELSIIPTMLVR AGA LALPMAVVERVVELP Sbjct: 474 TAVEKHRGTIRIESTIGKGTKFSIRLPIELSIIPTMLVRCAGAPLALPMAVVERVVELPE 533 Query: 364 EFDEVGGAPVLRDQGRPLPVHSLAGVLGYEPGNERVGIVMAVPHPYILSVGAVEGTADLV 423 FDEVGGAPVLRDQGRPLPV+SLAGVLGYEPGNERVGIVMAVPHPYIL V +VEGTADLV Sbjct: 534 NFDEVGGAPVLRDQGRPLPVNSLAGVLGYEPGNERVGIVMAVPHPYILGVESVEGTADLV 593 Query: 424 IKPLTAIQTNGITGTARSAEGELVLVVGLSFLLEGCR 460 IKPLTAI T GITGTARSAEGELVLVVGLSFLL+GCR Sbjct: 594 IKPLTAIHTAGITGTARSAEGELVLVVGLSFLLDGCR 630 >A6SWX8.1 A6SWX8_JANMA CheA chemotaxis protein EC=2.7.3.- Length = 615 Score = 638 bits (1645), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/475 (72%), Positives = 379/475 (79%), Gaps = 18/475 (3%) Query: 2 LGADGSLDWNALYQAVSGGTGEVAPVAAAPVQAAPAEAESSSGHPKSLPSA------TPT 55 +GADG LDWNALY AV P +AP AA A + + + +A T Sbjct: 150 VGADG-LDWNALYLAV-------VPNGSAPELAANASGATPAATVTPVAAAPAKAPETGA 201 Query: 56 PKPAAAPVQARRATDNQPGNA-KEESIRIDAGKLDALLEVAGESVQAANQAAVLLEKLQQ 114 KP + R + D Q G A KE+SIR+DA KLD LLEVAGESVQAANQA+VLLEKL Q Sbjct: 202 NKPWDG-IDRRGSGDKQGGAALKEDSIRVDAVKLDTLLEVAGESVQAANQASVLLEKLAQ 260 Query: 115 FKFEGTAASLMSTLAETLGRASRYSSELQRATLSTRMQPVGRLFQKFPRLVRELAKDLGK 174 F EG AA+LM+ LAETL RASRYS+ELQRATL+TRMQPVG+LFQKFPRLVRELAKDLGK Sbjct: 261 FPVEGHAATLMAALAETLNRASRYSTELQRATLATRMQPVGKLFQKFPRLVRELAKDLGK 320 Query: 175 DVDLAISGAETEVDRVVVDSLYDPLVHMLRNSLDHGIETD--RGAAGKPNKATISLKAWQ 232 DV+L I GAETEVDRVVVDSLYDPLVHMLRNSLDHGIE R +GKP K+TI LKAWQ Sbjct: 321 DVELQIEGAETEVDRVVVDSLYDPLVHMLRNSLDHGIEEAAVRAKSGKPAKSTILLKAWQ 380 Query: 233 EASSVMIEIFDDGKGMDPDFLRKKAIGKGLIGEHEAQSHDEALQLVFLPGFSTKEVASSV 292 EASSVMIE+ DDGKGMD LR KAI KGLI ++ AQS +E LQLVFLPGFSTKEVA+SV Sbjct: 381 EASSVMIELSDDGKGMDGQQLRAKAISKGLISDNAAQSQEEMLQLVFLPGFSTKEVANSV 440 Query: 293 SGRGVGMDVVKTAVEKHRGTIRIDSTLGVGTRFSIRLPIELSIIPTMLVRTAGAALALPM 352 SGRGVGMDVVKTAVEKHRG I IDS LG GTRFSIRLPIELSI+PTMLVR++ AALALPM Sbjct: 441 SGRGVGMDVVKTAVEKHRGAITIDSVLGAGTRFSIRLPIELSIVPTMLVRSSDAALALPM 500 Query: 353 AVVERVVELPAEFDEVGGAPVLRDQGRPLPVHSLAGVLGYEPGNERVGIVMAVPHPYILS 412 AVV+RVVELP EF++VGGAPVLRDQGRPLPV SLAG L YE G E+VGIV+A P PYILS Sbjct: 501 AVVQRVVELPEEFEQVGGAPVLRDQGRPLPVRSLAGALAYEVGVEKVGIVIAAPQPYILS 560 Query: 413 VGAVEGTADLVIKPLTAIQTNGITGTARSAEGELVLVVGLSFLLEGCRSAAKAVA 467 VG VEGTADLVIKP+TAI GI GTARSAEGELVLVVGLSFLLEGCRS K A Sbjct: 561 VGMVEGTADLVIKPMTAITVPGIAGTARSAEGELVLVVGLSFLLEGCRSTPKLAA 615 >A4G3P8.1 A4G3P8_HERAR Putative chemotaxis protein CheA Length = 609 Score = 629 bits (1623), Expect = e-178, Method: Compositional matrix adjust. Identities = 344/471 (73%), Positives = 373/471 (79%), Gaps = 24/471 (5%) Query: 9 DWNALYQAVSGGTGEVAPVAAAPVQAAPAEAESSSGHPKSLPSATPTPKPAAAPVQA--- 65 DWNALYQAV P A A + A +++ S TP AAP + Sbjct: 151 DWNALYQAV-------VPAGTALATPAASLAATAAVTAASAVPVTP-----AAPAKGGWD 198 Query: 66 ---RRATDNQPGNA----KEESIRIDAGKLDALLEVAGESVQAANQAAVLLEKLQQFKFE 118 RR + A KEESIR+DA KLDALLEVAGESVQAANQA+VLLEKL QF E Sbjct: 199 GIDRRGSGGGDKTAAAGIKEESIRVDAVKLDALLEVAGESVQAANQASVLLEKLAQFPVE 258 Query: 119 GTAASLMSTLAETLGRASRYSSELQRATLSTRMQPVGRLFQKFPRLVRELAKDLGKDVDL 178 G AA+LM+ LAETL RASRYS+ELQRATLSTRMQPVG+LFQKFPRLVRELAKDLGKDVDL Sbjct: 259 GQAATLMAALAETLNRASRYSTELQRATLSTRMQPVGKLFQKFPRLVRELAKDLGKDVDL 318 Query: 179 AISGAETEVDRVVVDSLYDPLVHMLRNSLDHGIETD--RGAAGKPNKATISLKAWQEASS 236 I GAETEVDRVVVDSLYDPLVHMLRNSLDHGIE + R A GK K+ I LKAWQEASS Sbjct: 319 QIEGAETEVDRVVVDSLYDPLVHMLRNSLDHGIEDNATRTANGKSTKSVILLKAWQEASS 378 Query: 237 VMIEIFDDGKGMDPDFLRKKAIGKGLIGEHEAQSHDEALQLVFLPGFSTKEVASSVSGRG 296 VMIEI DDGKGM+ + LR KAI KGLI + AQ+ +E LQLVFLPGFSTKEVA+SVSGRG Sbjct: 379 VMIEISDDGKGMNGEQLRAKAISKGLIADTAAQTQEEMLQLVFLPGFSTKEVANSVSGRG 438 Query: 297 VGMDVVKTAVEKHRGTIRIDSTLGVGTRFSIRLPIELSIIPTMLVRTAGAALALPMAVVE 356 VGMDVVKTAVEKHRG I IDSTLGVGTRFSIRLPIELSI+PTMLVR++ AALALPMAVV+ Sbjct: 439 VGMDVVKTAVEKHRGAITIDSTLGVGTRFSIRLPIELSIVPTMLVRSSDAALALPMAVVQ 498 Query: 357 RVVELPAEFDEVGGAPVLRDQGRPLPVHSLAGVLGYEPGNERVGIVMAVPHPYILSVGAV 416 RVVELP EF+ VGGAPVLRDQGRPLPV SLAG LGYE G E+VGIV++ P PYILSVGAV Sbjct: 499 RVVELPDEFEHVGGAPVLRDQGRPLPVRSLAGSLGYELGVEKVGIVISAPQPYILSVGAV 558 Query: 417 EGTADLVIKPLTAIQTNGITGTARSAEGELVLVVGLSFLLEGCRSAAKAVA 467 EGTADLVIKP+TAI GI GTARSAEGELVLVVGLSFLLEG R AK A Sbjct: 559 EGTADLVIKPMTAITVPGIAGTARSAEGELVLVVGLSFLLEGARQTAKMAA 609 >F1W3S9.1 F1W3S9_9BURK Signal transduction histidine kinase CheA Length = 605 Score = 616 bits (1589), Expect = e-174, Method: Compositional matrix adjust. Identities = 330/466 (70%), Positives = 373/466 (80%), Gaps = 17/466 (3%) Query: 4 ADGSLDWNALYQAVSGGTGEVAPVAAAPVQAAPAEAESSSGHPKSLPSATPTPKPAAAPV 63 ++G+LDW ALY AV G VA V V A A +++ P S + KP A + Sbjct: 155 SNGALDWEALYAAVVPGAAPVAAVHVPAVAAVAMAAAAAAIAPAS--APAAGEKPMVASI 212 Query: 64 QARRATDNQPGNAKEESIRIDAGKLDALLEVAGESVQAANQAAVLLEKLQQFKFEGTAAS 123 KE+SIR+DA KLDALLEVAGESVQAANQA+VLLEKLQQFKF+G AA+ Sbjct: 213 -------------KEDSIRVDAVKLDALLEVAGESVQAANQASVLLEKLQQFKFDGAAAA 259 Query: 124 LMSTLAETLGRASRYSSELQRATLSTRMQPVGRLFQKFPRLVRELAKDLGKDVDLAISGA 183 LM +L ETL RASRYS+ELQRATLSTRMQPVGRLFQKFPRLVRELAKDLGKDV+L I GA Sbjct: 260 LMVSLTETLNRASRYSTELQRATLSTRMQPVGRLFQKFPRLVRELAKDLGKDVELVIEGA 319 Query: 184 ETEVDRVVVDSLYDPLVHMLRNSLDHGIET--DRGAAGKPNKATISLKAWQEASSVMIEI 241 ETEVDRVVVDSLYDPLVHMLRN+LDHGIE+ DR A GK ++A ISLKAWQEA+SVMI + Sbjct: 320 ETEVDRVVVDSLYDPLVHMLRNALDHGIESAVDRAALGKSSRAIISLKAWQEANSVMIVL 379 Query: 242 FDDGKGMDPDFLRKKAIGKGLIGEHEAQSHDEALQLVFLPGFSTKEVASSVSGRGVGMDV 301 DDGKG++ LR+KA+ KGLI + AQ+ EA QLVFLPGFSTK+VASSVSGRGVGMDV Sbjct: 380 GDDGKGLNAAELRRKAVSKGLISDSAAQTDQEAYQLVFLPGFSTKDVASSVSGRGVGMDV 439 Query: 302 VKTAVEKHRGTIRIDSTLGVGTRFSIRLPIELSIIPTMLVRTAGAALALPMAVVERVVEL 361 VKTAVEKHRG I IDS LG GTRFSIRLPIELSI+PTMLVRTA AALA+PMAVV+RVVEL Sbjct: 440 VKTAVEKHRGAISIDSALGSGTRFSIRLPIELSIVPTMLVRTADAALAMPMAVVQRVVEL 499 Query: 362 PAEFDEVGGAPVLRDQGRPLPVHSLAGVLGYEPGNERVGIVMAVPHPYILSVGAVEGTAD 421 P + EVGGAPVLRDQG+PLPV SLA +LGY PG ERVGIV+A P PYIL+V VEGTA+ Sbjct: 500 PETYMEVGGAPVLRDQGQPLPVRSLAAILGYTPGPERVGIVIAAPSPYILAVEKVEGTAE 559 Query: 422 LVIKPLTAIQTNGITGTARSAEGELVLVVGLSFLLEGCRSAAKAVA 467 +VIKPLTA+ GITGTARSAEGELVLVVGLSFLL+GC+ + A Sbjct: 560 MVIKPLTALSVQGITGTARSAEGELVLVVGLSFLLDGCKMGGRLAA 605 >D5CMV5.1 D5CMV5_SIDLE CheA signal transduction histidine kinase Length = 619 Score = 324 bits (831), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 187/461 (40%), Positives = 276/461 (59%), Gaps = 12/461 (2%) Query: 7 SLDWNALYQAVSGGTGEVAPVAAAPVQAAPAEAESSSGHPKSLPSATPTPKPAAAPVQAR 66 ++DW+ALY A++GG V V A + AEA + + T P R Sbjct: 161 NVDWDALYNALTGGNDIVQEVGAVRDEKKIAEAINEEESTRKAFGRRSTDVPGTTV--GR 218 Query: 67 RATDNQPGNAKEESIRIDAGKLDALLEVAGESVQAANQAAVLLEKLQQFKFEGTAASLMS 126 RA D AKE +IR+D +LD +L ++GE N+ L + Q + A + Sbjct: 219 RAGDVPAAEAKETTIRVDTDRLDQVLNLSGEIGLTKNRLTHLRSDILQGHND---ADTLR 275 Query: 127 TLAETLGRASRYSSELQRATLSTRMQPVGRLFQKFPRLVRELAKDLGKDVDLAISGAETE 186 L + + + LQ A + TRMQP+GRLF+K+PRL R+LA+ LGKDV+L +SG ETE Sbjct: 276 ELDQAVSQLDMLVVSLQNAVMKTRMQPIGRLFKKYPRLARDLARSLGKDVELVLSGEETE 335 Query: 187 VDRVVVDSLYDPLVHMLRNSLDHGIET--DRGAAGKPNKATISLKAWQEASSVMIEIFDD 244 +D+ +++ L DPLVH++RN++DHG+ET +R AAGK K+ + L A QE ++I I DD Sbjct: 336 MDKTMIEDLNDPLVHLVRNAVDHGVETIEERIAAGKSEKSFVELSARQEGDHILITISDD 395 Query: 245 GKGMDPDFLRKKAIGKGLIGEHEAQSHDEA--LQLVFLPGFSTKEVASSVSGRGVGMDVV 302 GKGM P+ +R KA+ KGLI A + DEA L+L+FLPGFSTK+ SSVSGRGVGMDVV Sbjct: 396 GKGMRPEVIRNKAVEKGLITAEVANTLDEARCLELIFLPGFSTKDEISSVSGRGVGMDVV 455 Query: 303 KTAVEKHRGTIRIDSTLGVGTRFSIRLPIELSIIPTMLVRTAGAALALPMAVVERVVELP 362 KT ++K GT+ I+S G GT SI LP+ L+I+P +++R A + A+P+++V ++ + Sbjct: 456 KTNIQKLNGTVVIESEPGKGTTLSISLPLTLAILPVLVLRLADQSFAVPLSMVREILPVT 515 Query: 363 -AEFDEVGGAPVLRDQGRPLPVHSLAGVLGY-EPGNERVGIVMAV-PHPYILSVGAVEGT 419 E +V G + +G LPV LA ++G+ N VG++M + +IL+ G Sbjct: 516 QQELQQVSGKATMVVRGEVLPVLPLAQMIGWGSSENSEVGVLMQFGNNSFILTADGFVGH 575 Query: 420 ADLVIKPLTAIQTNGITGTARSAEGELVLVVGLSFLLEGCR 460 D+VIK L + G+ G S+EG++VL++ + LL R Sbjct: 576 EDVVIKSLDTFRPKGVAGVTMSSEGDIVLILDIKELLSDVR 616