BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0013.p         (72 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

F1VWS5.1 F1VWS5_9BURK Regulatory protein CysB                         136   1e-30
D8J0M5.1 D8J0M5_HERSS Cys regulon transcription regulator protein     134   6e-30
A6T0U3.1 A6T0U3_JANMA Cys regulon transcriptionnal regulator pro...   132   2e-29
A4G7N4.1 A4G7N4_HERAR HTH-type transcriptional regulator cysB (C...   132   2e-29
Q0K7E4.1 Q0K7E4_CUPNH Transcriptional regulator, LysR-family          130   7e-29

>F1VWS5.1 F1VWS5_9BURK Regulatory protein CysB
          Length = 313

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 65/65 (100%), Positives = 65/65 (100%)

Query: 1  MNLHQFRFVREAVRQNYNLTEAAKALFTSQPGVSKAIIELEEELGVDIFTRHGKRIRGLT 60
          MNLHQFRFVREAVRQNYNLTEAAKALFTSQPGVSKAIIELEEELGVDIFTRHGKRIRGLT
Sbjct: 1  MNLHQFRFVREAVRQNYNLTEAAKALFTSQPGVSKAIIELEEELGVDIFTRHGKRIRGLT 60

Query: 61 EPGRA 65
          EPGRA
Sbjct: 61 EPGRA 65


>D8J0M5.1 D8J0M5_HERSS Cys regulon transcription regulator protein
          Length = 313

 Score =  134 bits (336), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 63/65 (96%), Positives = 65/65 (100%)

Query: 1  MNLHQFRFVREAVRQNYNLTEAAKALFTSQPGVSKAIIELEEELGVDIFTRHGKRIRGLT 60
          MNLHQFRFVREAVRQN+NLTEAAKAL+TSQPGVSKAIIELEEELGVDIFTRHGKRIRGLT
Sbjct: 1  MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELGVDIFTRHGKRIRGLT 60

Query: 61 EPGRA 65
          EPGRA
Sbjct: 61 EPGRA 65


>A6T0U3.1 A6T0U3_JANMA Cys regulon transcriptionnal regulator protein
          Length = 313

 Score =  132 bits (331), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 62/65 (95%), Positives = 64/65 (98%)

Query: 1  MNLHQFRFVREAVRQNYNLTEAAKALFTSQPGVSKAIIELEEELGVDIFTRHGKRIRGLT 60
          MNLHQ RFVREAVRQN+NLTEAAKALFTSQPGVSKAIIELEEELGVDIF+RHGKRIRGLT
Sbjct: 1  MNLHQLRFVREAVRQNFNLTEAAKALFTSQPGVSKAIIELEEELGVDIFSRHGKRIRGLT 60

Query: 61 EPGRA 65
          EPGRA
Sbjct: 61 EPGRA 65


>A4G7N4.1 A4G7N4_HERAR HTH-type transcriptional regulator cysB (Cys regulon
          transcriptional activator)
          Length = 313

 Score =  132 bits (331), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 62/65 (95%), Positives = 64/65 (98%)

Query: 1  MNLHQFRFVREAVRQNYNLTEAAKALFTSQPGVSKAIIELEEELGVDIFTRHGKRIRGLT 60
          MNLHQ RFVREAVRQN+NLTEAAKALFTSQPGVSKAIIELEEELGVDIF+RHGKRIRGLT
Sbjct: 1  MNLHQLRFVREAVRQNFNLTEAAKALFTSQPGVSKAIIELEEELGVDIFSRHGKRIRGLT 60

Query: 61 EPGRA 65
          EPGRA
Sbjct: 61 EPGRA 65


>Q0K7E4.1 Q0K7E4_CUPNH Transcriptional regulator, LysR-family
          Length = 270

 Score =  130 bits (327), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 62/64 (96%), Positives = 63/64 (98%)

Query: 1  MNLHQFRFVREAVRQNYNLTEAAKALFTSQPGVSKAIIELEEELGVDIFTRHGKRIRGLT 60
          MNLHQFRFVREAVRQNYNLTEAAKAL+TSQPGVSKAIIELEEELGVDIFTRHGKRIR LT
Sbjct: 1  MNLHQFRFVREAVRQNYNLTEAAKALYTSQPGVSKAIIELEEELGVDIFTRHGKRIRSLT 60

Query: 61 EPGR 64
          EPGR
Sbjct: 61 EPGR 64