BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0026.0095.p         (68 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IPE5.1 D8IPE5_HERSS DNA polymerase III (Chi subunit) protein E...   113   1e-23
A4G349.1 A4G349_HERAR Putative DNA polymerase III chi subunit, H...   107   8e-22
A6SVR2.1 A6SVR2_JANMA DNA polymerase III chi subunit EC=2.7.7.7       106   1e-21
F1W0U4.1 F1W0U4_9BURK DNA polymerase III subunit chi                   99   3e-19
C3XBL1.1 C3XBL1_OXAFO DNA polymerase III chi subunit                   78   5e-13

>D8IPE5.1 D8IPE5_HERSS DNA polymerase III (Chi subunit) protein EC=2.7.7.7
          Length = 139

 Score =  113 bits (282), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 50/67 (74%), Positives = 58/67 (86%)

Query: 1   VILTDSEAVELPHHHVLINLSGNTPEHFARFERMFEIISSDEADKAAGRDRYRFYKERGY 60
           +ILT  +A ELPHH +LINL  +TP HFARFER+ EIIS+D+ADKAAGRDRYRFYKERGY
Sbjct: 72  IILTSDDAAELPHHQLLINLGADTPAHFARFERLLEIISADDADKAAGRDRYRFYKERGY 131

Query: 61  PLSHFVA 67
           PL+H VA
Sbjct: 132 PLTHHVA 138


>A4G349.1 A4G349_HERAR Putative DNA polymerase III chi subunit, HolC
           EC=2.7.7.7
          Length = 141

 Score =  107 bits (266), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 44/68 (64%), Positives = 60/68 (88%)

Query: 1   VILTDSEAVELPHHHVLINLSGNTPEHFARFERMFEIISSDEADKAAGRDRYRFYKERGY 60
           ++LT  +A++ PHH +LINLS   PEHFARFERMFE++SSD+ADK++GR+RY +YK+RGY
Sbjct: 72  ILLTTEQAMKSPHHQILINLSDTPPEHFARFERMFEVVSSDDADKSSGRERYAYYKQRGY 131

Query: 61  PLSHFVAD 68
           PL+HFVA+
Sbjct: 132 PLTHFVAE 139


>A6SVR2.1 A6SVR2_JANMA DNA polymerase III chi subunit EC=2.7.7.7
          Length = 141

 Score =  106 bits (264), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 45/68 (66%), Positives = 58/68 (85%)

Query: 1   VILTDSEAVELPHHHVLINLSGNTPEHFARFERMFEIISSDEADKAAGRDRYRFYKERGY 60
           ++LT   A+E PH  +LINLS  +P HFARFERMFE+IS+++ADK+AGRDRY FYK+RGY
Sbjct: 72  ILLTADSAMESPHTQILINLSDTSPTHFARFERMFEVISTEDADKSAGRDRYSFYKQRGY 131

Query: 61  PLSHFVAD 68
           PL+HFVA+
Sbjct: 132 PLTHFVAE 139


>F1W0U4.1 F1W0U4_9BURK DNA polymerase III subunit chi
          Length = 141

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 46/70 (65%), Positives = 57/70 (81%), Gaps = 2/70 (2%)

Query: 1   VIL--TDSEAVELPHHHVLINLSGNTPEHFARFERMFEIISSDEADKAAGRDRYRFYKER 58
           VIL  TD++A  LPHH VLINL+   P  FARFER+FEI+++D AD A+GRDRYRFY++R
Sbjct: 71  VILATTDADADALPHHQVLINLTSQPPPTFARFERLFEIVATDAADIASGRDRYRFYQQR 130

Query: 59  GYPLSHFVAD 68
           GY L+HFVAD
Sbjct: 131 GYALTHFVAD 140


>C3XBL1.1 C3XBL1_OXAFO DNA polymerase III chi subunit
          Length = 141

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 36/67 (53%), Positives = 47/67 (70%)

Query: 1   VILTDSEAVELPHHHVLINLSGNTPEHFARFERMFEIISSDEADKAAGRDRYRFYKERGY 60
           VILT S+  ELPH  +L+NLS + P  +A+FER+ E++S+D AD  AGR RY  Y+ERGY
Sbjct: 74  VILTSSDTDELPHSQILLNLSPDIPAFYAQFERLLELVSTDPADTEAGRQRYVHYRERGY 133

Query: 61  PLSHFVA 67
            L H  A
Sbjct: 134 TLHHETA 140