BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0026.0088.p         (110 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q46V92.1 Q46V92_CUPPJ Amino acid ABC transporter, permease prote...   118   2e-25
B2JP04.1 B2JP04_BURP8 Polar amino acid ABC transporter, inner me...   115   3e-24
C1D811.1 C1D811_LARHH Probable amino acid ABC transporter, perme...   114   4e-24
B1HE49.1 B1HE49_BURPS Polar amino acid uptake ABC transporter, P...   114   5e-24
Q7NQT5.1 Q7NQT5_CHRVO Probable amino acid ABC transporter, perme...   113   1e-23

>Q46V92.1 Q46V92_CUPPJ Amino acid ABC transporter, permease protein, 3-TM
           region, His/Glu/Gln/Arg/opine
          Length = 223

 Score =  118 bits (296), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 59/97 (60%), Positives = 72/97 (74%)

Query: 12  PVLAAVANVYVSFMRSTPQLIQAFLVYFGLGAAGVELPLIVIGTLVLTANAGAYLSETMR 71
           PVL+ +A  YVS MR TP L+Q F+VY+GL   G+ L     G L LTANAGAYLSE+MR
Sbjct: 52  PVLSGIARAYVSVMRGTPLLVQMFVVYYGLPDLGINLEPTTAGILTLTANAGAYLSESMR 111

Query: 72  GAMEGVSAGQWSAGYSLGLTRFQTICHIVMPQALRLA 108
           GA+ G+S GQWSA +SLGL+  QT+ +IV PQALRLA
Sbjct: 112 GAILGISRGQWSAAHSLGLSHLQTLRYIVCPQALRLA 148


>B2JP04.1 B2JP04_BURP8 Polar amino acid ABC transporter, inner membrane
           subunit
          Length = 219

 Score =  115 bits (287), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 55/97 (56%), Positives = 71/97 (73%)

Query: 12  PVLAAVANVYVSFMRSTPQLIQAFLVYFGLGAAGVELPLIVIGTLVLTANAGAYLSETMR 71
           P++A +A  YVS MR TP L+Q F+VY+GL   G+ L     G L LTANAGAYLSE+MR
Sbjct: 48  PIIAGIARAYVSLMRGTPLLVQIFVVYYGLPDLGISLDPTSAGILALTANAGAYLSESMR 107

Query: 72  GAMEGVSAGQWSAGYSLGLTRFQTICHIVMPQALRLA 108
           GA+ G+S GQW A +SLGLT  QT+ +++ PQALR+A
Sbjct: 108 GAILGISQGQWGAAHSLGLTHMQTLRYVICPQALRMA 144


>C1D811.1 C1D811_LARHH Probable amino acid ABC transporter, permease protein
          Length = 219

 Score =  114 bits (286), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 56/106 (52%), Positives = 74/106 (69%)

Query: 3   VTFIRHERVPVLAAVANVYVSFMRSTPQLIQAFLVYFGLGAAGVELPLIVIGTLVLTANA 62
           +  +R  R+PVLA +A +YVS MR TP L+Q F++Y+GL   G+E   +  G L LT NA
Sbjct: 39  IALVRLTRLPVLAPLAALYVSAMRGTPLLVQIFVIYYGLPGIGIEFDPVTAGILALTMNA 98

Query: 63  GAYLSETMRGAMEGVSAGQWSAGYSLGLTRFQTICHIVMPQALRLA 108
            AYLSE+MRGA+ GVS GQW A  SLG + +Q++  I+ PQALRLA
Sbjct: 99  AAYLSESMRGAIAGVSTGQWQAASSLGFSWWQSMRFIIAPQALRLA 144


>B1HE49.1 B1HE49_BURPS Polar amino acid uptake ABC transporter, PAAT family,
           permease protein
          Length = 219

 Score =  114 bits (285), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 58/108 (53%), Positives = 75/108 (69%)

Query: 1   MLVTFIRHERVPVLAAVANVYVSFMRSTPQLIQAFLVYFGLGAAGVELPLIVIGTLVLTA 60
           +LV  +R     +L+A+A  YVS MR TP L+Q F+VY+GL   G+ L     G L LT 
Sbjct: 37  LLVALVRIGSNRLLSAIAQGYVSLMRGTPLLVQMFVVYYGLPDIGISLDPTAAGILTLTL 96

Query: 61  NAGAYLSETMRGAMEGVSAGQWSAGYSLGLTRFQTICHIVMPQALRLA 108
           NAGAYLSE+MRGA+ G+  GQW+A +SLGLT  QT+ H++ PQALRLA
Sbjct: 97  NAGAYLSESMRGAILGIGRGQWAASHSLGLTHVQTLRHVICPQALRLA 144


>Q7NQT5.1 Q7NQT5_CHRVO Probable amino acid ABC transporter, permease protein
          Length = 220

 Score =  113 bits (282), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 54/106 (50%), Positives = 74/106 (69%)

Query: 3   VTFIRHERVPVLAAVANVYVSFMRSTPQLIQAFLVYFGLGAAGVELPLIVIGTLVLTANA 62
           V  +R  ++PVL+ +A  YVS MR TP L+Q F++Y+GL   G+EL  +  G L LT N 
Sbjct: 40  VAMVRVAKLPVLSQLAAFYVSAMRGTPLLVQIFVIYYGLPGVGLELDPVPAGVLALTLNV 99

Query: 63  GAYLSETMRGAMEGVSAGQWSAGYSLGLTRFQTICHIVMPQALRLA 108
            AYLSE++RG + GV+ GQW A +SLG T +QT+ HI+ PQALRL+
Sbjct: 100 AAYLSESLRGGIAGVAKGQWDAAFSLGFTWWQTMRHIIAPQALRLS 145