BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0026.0041.p (272 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value F1W285.1 F1W285_9BURK Complex sensory protein with histidine kin... 268 9e-70 B9TAY9.1 B9TAY9_RICCO Two-component system sensor histidine kina... 267 1e-69 Q21WZ6.1 Q21WZ6_RHOFD Response regulator receiver modulated digu... 267 1e-69 A2SIL3.1 A2SIL3_METPP Signal transduction protein 243 3e-62 E1MPW8.1 E1MPW8_9GAMM Putative PAS/PAC sensor protein 223 2e-56 >F1W285.1 F1W285_9BURK Complex sensory protein with histidine kinase domain Length = 803 Score = 268 bits (684), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 135/261 (51%), Positives = 181/261 (69%), Gaps = 6/261 (2%) Query: 12 RTLLLVDDETNILSALKRLLRQDKYDIVTANNGQEALEALKSGPVDVIVTDQRMPGMTGV 71 RTLLLVDDE N++S+LKRLLR+D Y I+TAN+G E L L + PVDVI++DQRMPGMTGV Sbjct: 533 RTLLLVDDEVNMVSSLKRLLRRDDYRILTANSGAEGLAILAAHPVDVILSDQRMPGMTGV 592 Query: 72 EFLRLAKESYPDTVRIVLSGYTELQSVTDAVNEGAVYKFLTKPWDDGQLRGHVAEAFRRK 131 EFL +AK +P TVR+VLSGYTELQSVTDAVNEGA+YKFLTKPWDD +LRGH+ EAF RK Sbjct: 593 EFLSIAKTRFPRTVRLVLSGYTELQSVTDAVNEGAIYKFLTKPWDDDKLRGHIQEAFHRK 652 Query: 132 EMADENLRLQQQLQMANLALEETNKELDKLLKVQEERIETDEVSLRIIHEILEHLPTPIL 191 EMAD+N RL +++ NL L N++ +LL +++E+I D SL I+ E ++H+P P++ Sbjct: 653 EMADDNRRLAREVYAVNLGLAAANRQQQELLGLRQEQITRDASSLHIVREAMQHVPLPVI 712 Query: 192 GMDDEKNIVFVNAAAQSLFGETMLLLGMKMEGATPAL------EPAWDLSSAEVDINSRV 245 +DD I F+N AA L + +LLG P + + V+++ + Sbjct: 713 AIDDSDMIAFINDAAARLLPQRGMLLGGDARYLLPEIVRHLTPQSQQPPRPQPVELDGQH 772 Query: 246 YKVLTHPMGRNSRSRGKLMTL 266 + + TH MG+ S S G L+TL Sbjct: 773 FLLGTHLMGQGSSSSGWLVTL 793 >B9TAY9.1 B9TAY9_RICCO Two-component system sensor histidine kinase/response regulator, putative (Fragment) Length = 482 Score = 267 bits (682), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 133/246 (54%), Positives = 172/246 (69%), Gaps = 3/246 (1%) Query: 12 RTLLLVDDETNILSALKRLLRQDKYDIVTANNGQEALEALKSGPVDVIVTDQRMPGMTGV 71 RTLLLVDDE NILSALKRLLR D YDI+TA +G++ L L PVDVI++DQRMPG+ G Sbjct: 236 RTLLLVDDEVNILSALKRLLRPDGYDILTAGSGEQGLALLARQPVDVIISDQRMPGINGA 295 Query: 72 EFLRLAKESYPDTVRIVLSGYTELQSVTDAVNEGAVYKFLTKPWDDGQLRGHVAEAFRRK 131 +FLR A++ PDT+RI+LSGYTELQSVTDAVNEGA+YKFLTKPW+D QLR H+ +AFR K Sbjct: 296 DFLREARKLRPDTIRIMLSGYTELQSVTDAVNEGAIYKFLTKPWNDAQLRAHLHDAFRLK 355 Query: 132 EMADENLRLQQQLQMANLALEETNKELDKLLKVQEERIETDEVSLRIIHEILEHLPTPIL 191 E+AD N RL +++ AN L N+ +++LL + +I+ DE+SL + E+L+ LP P++ Sbjct: 356 EIADVNARLHMEVRNANHELASANRRMEQLLHQMQRQIDRDEISLNVARELLQRLPLPVI 415 Query: 192 GMDDEKNIVFVNAAAQSLFGETMLLLGMKMEGATPALEP---AWDLSSAEVDINSRVYKV 248 GMDD+ I FVNAAA +F LLG P L P S + DI+ + Y V Sbjct: 416 GMDDDGMIAFVNAAAGRVFRRAGTLLGNAAGAVLPELFPGGAGLPPSGHQADIDGQRYAV 475 Query: 249 LTHPMG 254 +PMG Sbjct: 476 TAYPMG 481 >Q21WZ6.1 Q21WZ6_RHOFD Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) Length = 1355 Score = 267 bits (682), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 140/264 (53%), Positives = 187/264 (70%), Gaps = 4/264 (1%) Query: 8 ERSPRTLLLVDDETNILSALKRLLRQDKYDIVTANNGQEALEALKSGPVDVIVTDQRMPG 67 ++ RTLLLVDDE NIL++LKRL R+D + I+TAN+G E LE L VD+I++DQRMPG Sbjct: 1086 QKPQRTLLLVDDEPNILASLKRLFRRDGHLILTANSGAEGLELLSRQKVDLIISDQRMPG 1145 Query: 68 MTGVEFLRLAKESYPDTVRIVLSGYTELQSVTDAVNEGAVYKFLTKPWDDGQLRGHVAEA 127 MTGVEFLR AK YPDT+RIVLSGYTELQSVTDA+NEGAVY+FLTKPW+D LR H+ +A Sbjct: 1146 MTGVEFLRAAKALYPDTIRIVLSGYTELQSVTDAINEGAVYRFLTKPWEDEPLREHINKA 1205 Query: 128 FRRKEMADENLRLQQQLQMANLALEETNKELDKLLKVQEERIETDEVSLRIIHEILEHLP 187 F KE+ +EN +L +++ N L N++L +L+ + +IE DE SL I E L+H+P Sbjct: 1206 FEYKELLEENRQLDVKIRTTNQELIAANRQLGDILQNKRHQIERDETSLAIAREALQHMP 1265 Query: 188 TPILGMDDEKNIVFVNAAAQSLFGETMLLLGMKMEGATP----ALEPAWDLSSAEVDINS 243 P++G+DDE I F N AA+ F + LLG+++ A P A+ A + + E+ I+ Sbjct: 1266 LPVIGVDDEGLIAFANVAAEHRFADAGALLGIELARALPAVDAAIAAAVEGTPCELLIDD 1325 Query: 244 RVYKVLTHPMGRNSRSRGKLMTLI 267 Y V +PMG NSRSRGK++TLI Sbjct: 1326 TRYLVKWNPMGINSRSRGKIVTLI 1349 >A2SIL3.1 A2SIL3_METPP Signal transduction protein Length = 965 Score = 243 bits (619), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 128/257 (49%), Positives = 175/257 (68%), Gaps = 3/257 (1%) Query: 12 RTLLLVDDETNILSALKRLLRQDKYDIVTANNGQEALEALKSGPVDVIVTDQRMPGMTGV 71 RTLLLVDDE NI++AL+RLLR + + ++ A +EAL+ + VDVI++DQRMPGMTGV Sbjct: 704 RTLLLVDDEENIVAALRRLLRAEGWLLLGATGAEEALQLMARHEVDVILSDQRMPGMTGV 763 Query: 72 EFLRLAKESYPDTVRIVLSGYTELQSVTDAVNEGAVYKFLTKPWDDGQLRGHVAEAFRRK 131 E LR AK+ YP+T+R+VLSGYTELQS+TDA+NEGA+YKFL KPWDD QLR H+ EAF K Sbjct: 764 ELLRRAKQLYPETIRLVLSGYTELQSITDAINEGAIYKFLAKPWDDEQLRTHLREAFALK 823 Query: 132 EMADENLRLQQQLQMANLALEETNKELDKLLKVQEERIETDEVSLRIIHEILEHLPTPIL 191 EMAD+N RL +++Q AN L E N+ L LL Q E+ E + S + E+L+ +P P+ Sbjct: 824 EMADQNRRLDEEVQAANRELAELNRRLQTLLSAQREQNEREVGSREVAQELLDAVPVPVF 883 Query: 192 GMDDEKNIVFVNAAAQSLFGETMLLLGMKMEGATP-ALEPAWDLSSAEVDINSRVYKVLT 250 G+DDE +VFVNA A++LFG LLG P L A + + + R + ++ Sbjct: 884 GIDDENLLVFVNAPARALFGLDGNLLGRPAAEQLPQTLRRALEGEPLMLTLAGRRWWTMS 943 Query: 251 HPMGRNSRSRGKLMTLI 267 P+ N +RG+L+ L+ Sbjct: 944 RPLSGN--ARGRLLVLL 958 >E1MPW8.1 E1MPW8_9GAMM Putative PAS/PAC sensor protein Length = 282 Score = 223 bits (569), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 133/269 (49%), Positives = 172/269 (63%), Gaps = 15/269 (5%) Query: 12 RTLLLVDDETNILSALKRLLRQDKYDIVTANNGQEALEALKSGPVDVIVTDQRMPGMTGV 71 RTLLLVDDE NI++ALKR LR D Y I+TANNG+E L L V VI++DQRMP MTGV Sbjct: 9 RTLLLVDDEVNIINALKRTLRPDGYTILTANNGEEGLALLAEHEVGVIISDQRMPHMTGV 68 Query: 72 EFLRLAKESYPDTVRIVLSGYTELQSVTDAVNEGAVYKFLTKPWDDGQLRGHVAEAFRRK 131 EFLR K YP T+RIVLSGYTEL+SVT A+NEGA+YKFLTKPWDD LR ++ EAF+ Sbjct: 69 EFLRKVKLLYPKTLRIVLSGYTELESVTSAINEGAIYKFLTKPWDDDLLRDNIREAFQYH 128 Query: 132 EMADENLRLQQQLQMANLALEETNKELD-KLLKVQEERIETDEVSLRIIHEILEHLPTPI 190 EM ENLRL ++L+ AN L N+ L+ K++ E I + + L+I EILEHLP I Sbjct: 129 EMEQENLRLSRELRSANEKLSILNQYLEQKVVDKSHEIIHSINL-LQISQEILEHLPIGI 187 Query: 191 LGMDDEKNIVFVNAAAQSLFGET--MLLLGMKMEGATP--------ALEPA--WDLSSAE 238 +G+D++ IV N A+ +FG+ LLG+ A P + P L Sbjct: 188 IGIDEQNMIVVSNKCAEEIFGQPPGTCLLGLMAGDALPDVLLQLLQKIYPGDLVQLDDEI 247 Query: 239 VDINSRV-YKVLTHPMGRNSRSRGKLMTL 266 V +N V +VL + MG S+S+G ++ L Sbjct: 248 VTLNEGVSIRVLINTMGDISQSKGIIIVL 276