BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0026.0038.p         (160 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q47GW9.1 Q47GW9_DECAR Diguanylate cyclase with PAS/PAC sensor         127   6e-28
Q47HG0.1 Q47HG0_DECAR PAS:Hemerythrin HHE cation binding region       124   6e-27
Q2BIE6.1 Q2BIE6_9GAMM Sensory box/GGDEF/EAL domain protein            123   1e-26
A8ZTC5.1 A8ZTC5_DESOH Multi-sensor signal transduction histidine...   123   1e-26
Q47K32.1 Q47K32_DECAR PAS/PAC sensor hybrid histidine kinase EC=...   121   3e-26

>Q47GW9.1 Q47GW9_DECAR Diguanylate cyclase with PAS/PAC sensor
          Length = 469

 Score =  127 bits (319), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 57/115 (49%), Positives = 76/115 (66%), Gaps = 2/115 (1%)

Query: 12  EPQISEFFDGCPVPAFAIDSHHVITHWNKACEHVLGVQASQMVGTRNQWKPFYLYERPVL 71
           E  +++  DG  V    ID+ H +THWN+ACE + G  A  ++GT NQW+ FY  +RP++
Sbjct: 153 EAYLAQIVDGSSVAMLVIDAQHRVTHWNRACEMLTGTLAKDVIGTGNQWQSFYASKRPIM 212

Query: 72  ADLIVAGSLENVVGVYYHDDDKFRSSVVIPGAVEAERFFPHLGESGRWLYFSAAP 126
           ADLI+  + EN V   YH   +FR S +I G  EAE FFPH GESGRWL+F+AAP
Sbjct: 213 ADLIIDDARENAVDRLYH--GRFRPSPLILGGYEAEDFFPHFGESGRWLFFTAAP 265



 Score =  110 bits (274), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 52/111 (46%), Positives = 67/111 (60%), Gaps = 2/111 (1%)

Query: 15  ISEFFDGCPVPAFAIDSHHVITHWNKACEHVLGVQASQMVGTRNQWKPFYLYERPVLADL 74
           ++   +G PV    ID+ H +THWN+AC  + GV A  M+G   QW+ FY   RP+LAD 
Sbjct: 12  LTHLVEGNPVATIVIDAQHRVTHWNRACAVLTGVSAEDMIGRSEQWRAFYDSARPILADF 71

Query: 75  IVAGSLENVVGVYYHDDDKFRSSVVIPGAVEAERFFPHLGESGRWLYFSAA 125
           +V G  +  V  YY  D K R S +IP A EAE FFP  G  GRWL+F+AA
Sbjct: 72  VVDGVNDVEVDQYY--DGKSRRSALIPDAFEAEDFFPAFGHGGRWLFFTAA 120


>Q47HG0.1 Q47HG0_DECAR PAS:Hemerythrin HHE cation binding region
          Length = 681

 Score =  124 bits (310), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 67/140 (47%), Positives = 84/140 (60%), Gaps = 13/140 (9%)

Query: 11  LEPQISEFFDGCPVPAFAIDSHHVITHWNKACEHVLGVQASQMVGTRNQWKPFYLYERPV 70
           +E  +++  DG PVP F ID+ H ITHWNKAC  V G+ +++MVGT+  WK FY   RPV
Sbjct: 236 MEQLLAQIIDGDPVPTFVIDAQHRITHWNKACAVVSGLSSAEMVGTQLHWKAFYKEYRPV 295

Query: 71  LADLIVAGSLENVVGVYYHDDDKFRSSVVIPGAVEAERFFPHLGESGRWLYFSAAPX--- 127
           +ADLIV GSLE     YY   D+FR S +I  A E E FF  LG +G WL F+AAP    
Sbjct: 296 MADLIVNGSLEAQYEEYYK--DRFRRSSLIQDAFEGEAFFEGLGPNGLWLAFTAAPLRNA 353

Query: 128 -----GAVRTDR---RRHRG 139
                GA+ T +    RHR 
Sbjct: 354 NGELIGAIETLQDVTERHRA 373


>Q2BIE6.1 Q2BIE6_9GAMM Sensory box/GGDEF/EAL domain protein
          Length = 711

 Score =  123 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 57/125 (45%), Positives = 85/125 (68%), Gaps = 8/125 (6%)

Query: 2   SFVQPQQALLEPQISEFFDGCPVPAFAIDSHHVITHWNKACEHVLGVQASQMVGTRNQWK 61
           +F + QQ     Q+++   G P+ +F IDS HVITHWNKACE + G+ A + +GT++ W+
Sbjct: 139 AFQETQQ-----QLAQIIVGNPIASFVIDSRHVITHWNKACEVLTGIPAIEAIGTKDTWR 193

Query: 62  PFYLYERPVLADLIVAGSLENVVGVYYHDDDKFRSSVVIPGAVEAERFFPHLGESGRWLY 121
            FY + RPV+A+L++ G+L + +  +Y    KF+ S +IPGA EA+ FFP +   GRWLY
Sbjct: 194 GFYDHPRPVMANLVLQGALNDDIEQHY--GKKFKPSELIPGAFEAQDFFPKM-HDGRWLY 250

Query: 122 FSAAP 126
           F+AAP
Sbjct: 251 FTAAP 255


>A8ZTC5.1 A8ZTC5_DESOH Multi-sensor signal transduction histidine kinase
          Length = 634

 Score =  123 bits (308), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 53/113 (46%), Positives = 79/113 (69%), Gaps = 1/113 (0%)

Query: 15  ISEFFDGCPVPAFAIDSHHVITHWNKACEHVLGVQASQMVGTRNQWKPFYLYERPVLADL 74
           +S+   G P+P F ID +H +TH+NKACE + G +A +++GT  QW+ FY  +RPV+AD+
Sbjct: 13  LSQIVSGSPIPTFVIDRNHRVTHFNKACEVLTGRKAEEIIGTDGQWRAFYAEKRPVMADI 72

Query: 75  IVAGSLENVVGVY-YHDDDKFRSSVVIPGAVEAERFFPHLGESGRWLYFSAAP 126
           ++  ++E++ G+   H   KFR+S V  GA EA  FFP LGE G+WL+F+AAP
Sbjct: 73  VLDAAIEDIAGMLETHYQGKFRASSVRSGAFEARDFFPALGEDGKWLFFTAAP 125


>Q47K32.1 Q47K32_DECAR PAS/PAC sensor hybrid histidine kinase EC=2.7.13.3
          Length = 1193

 Score =  121 bits (304), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/112 (46%), Positives = 75/112 (66%), Gaps = 6/112 (5%)

Query: 15  ISEFFDGCPVPAFAIDSHHVITHWNKACEHVLGVQASQMVGTRNQWKPFYLYERPVLADL 74
           +++  DG PVP   +D+ H ITHWN+ACE ++GV+A  +VGT NQWK FY  +RP++ADL
Sbjct: 412 LAKIIDGSPVPTLVLDADHKITHWNEACEQIIGVKAGDIVGTSNQWKAFYPSQRPIMADL 471

Query: 75  IVAGSLENVVGVYYHDDDKFRSSVVIPGAVEAERFFPHLGESGRWLYFSAAP 126
           ++ G +  +  +Y    DK+R S ++ G  EAE FFP      RWL+F+AAP
Sbjct: 472 VLNGEMAQIQALY---SDKYRRSRLVQGGYEAEDFFPMF---KRWLFFTAAP 517