BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0026.0034.p (571 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value E8YQ06.1 E8YQ06_9BURK Histidine kinase 646 0.0 B1FT60.1 B1FT60_9BURK Integral membrane sensor signal transducti... 639 0.0 E1TI99.1 E1TI99_BURSG Histidine kinase 632 e-179 D8N154.1 D8N154_RALSO Putative sensor signal transduction histid... 608 e-171 Q21X00.1 Q21X00_RHOFD PAS/PAC sensor signal transduction histidi... 400 e-109 >E8YQ06.1 E8YQ06_9BURK Histidine kinase Length = 584 Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/563 (59%), Positives = 416/563 (73%), Gaps = 10/563 (1%) Query: 11 PRLLKTQFLFAISGLAVLMLAGGLTAIYALHSAVAATKSLAEDRLLLMQQAQDLVEQTFL 70 PR L+ QF A LA+L+ GGLTA+Y L A T+ LA L MQ A LV+ T L Sbjct: 12 PRSLRWQFTLATVVLALLIATGGLTAVYTLRVATHETRVLATGELTRMQAADTLVQHTLL 71 Query: 71 IEREAYLLSSASSVAATTASYAEIVKHVEAVDQLVDQLAKGGDDVAVIDLHQAAQLFRNT 130 IERE+ L+ A+S+ A ASYA+IV+ +E D+L D+LA DDV+V+DLHQA+QLFRNT Sbjct: 72 IERESARLAGANSLDAMRASYADIVRELEIFDRLSDRLAAANDDVSVLDLHQASQLFRNT 131 Query: 131 ANIMAQLRESELR-------TPKLPPARLAQGGGREAAPVVPFRAELHRQSKALVDSARQ 183 NI+AQLRES+LR P A AQG A F L +Q+ A+V SA+ Sbjct: 132 VNIVAQLRESDLRAALAHTSNPAGASAAAAQGDPASRASRDTFSEGLRQQASAMVASAQL 191 Query: 184 QSTRFTQDYRVAVRELAETSARNQRWITGLLVVSLTLAWLVGHGFLGRQVLARLQKVSHS 243 QS R T++++ AV+ LA+TSARN+RWITGL+ VSL AWLV H FLG+ VLARL+ VS + Sbjct: 192 QSDRCTEEFQQAVQRLADTSARNERWITGLVAVSLLFAWLVAHAFLGKHVLARLEVVSSN 251 Query: 244 LRHGDP--GDALCKVPVHGADEIGEMARAVEQFQADRVQLAVANQTLKSEKARQDELIRK 301 LR GD G +V G DEIGEMARAVEQFQADR +LA A L+ EKARQ+ LI + Sbjct: 252 LRSGDAVRGQNASRVA-QGRDEIGEMARAVEQFQADRRELARAYAALREEKARQEALINE 310 Query: 302 LADAQSQLLQSEKMASIGQLAAGVAHEINNPVGFVNSNLGTLQRYVDEIMALLSAYEQSE 361 LA A SQLLQSEK+ASIGQLAAGVAHEINNPVGFVN+NLGTLQRYV +++ L+AYE++E Sbjct: 311 LAQAHSQLLQSEKLASIGQLAAGVAHEINNPVGFVNANLGTLQRYVADLLTALAAYERTE 370 Query: 362 AEMPEEIRRALAGHKARIDLDFLREDIASVFSESQDGLQRVIRIVQDLKTFSHVDEAEKQ 421 AE+ E R LA K ID+D+LR DI ++ SES +GLQRV RIVQ LK FSHVD+AEKQ Sbjct: 371 AELIAESRATLAALKREIDIDYLRTDIPALLSESVEGLQRVKRIVQGLKDFSHVDKAEKQ 430 Query: 422 WANLEQGLDSTLNVVSHDLKYTAEIVKEYGGIPDIECLPFQLNQVFLNLFVNAGQAIEGR 481 WANLE LD+T+N+V ++LKY A++ +E+G IP++EC+P QLNQVF+NL +NA Q+IEG Sbjct: 431 WANLESNLDTTINIVWNELKYKADLKREFGAIPELECIPSQLNQVFMNLLMNAAQSIEGH 490 Query: 482 GRIVLRTGHDEDQVWVEVEDSGKGIPEADLERIFEPFFTTKPVGTGTGLGLSLSYGIVAK 541 G I +RTGHD+ VWVEVED+G+GI +RIF+PFFTTKPVGTGTGLGLS+SYGIV K Sbjct: 491 GHITVRTGHDDTSVWVEVEDTGQGIRPEHRDRIFDPFFTTKPVGTGTGLGLSISYGIVRK 550 Query: 542 HGGKITVRSEVGKGSVFRVSLPK 564 GG+I VRSEVG+GS FRV LPK Sbjct: 551 QGGRIEVRSEVGQGSTFRVVLPK 573 >B1FT60.1 B1FT60_9BURK Integral membrane sensor signal transduction histidine kinase Length = 585 Score = 639 bits (1647), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/563 (59%), Positives = 411/563 (73%), Gaps = 9/563 (1%) Query: 11 PRLLKTQFLFAISGLAVLMLAGGLTAIYALHSAVAATKSLAEDRLLLMQQAQDLVEQTFL 70 PR L+ QF A L +L+ GLTA+Y L A T+ LA L MQ A LV+ T L Sbjct: 12 PRSLRRQFTLATVVLTLLIATSGLTAVYTLRVATNETRLLATGELTRMQAADTLVQHTLL 71 Query: 71 IEREAYLLSSASSVAATTASYAEIVKHVEAVDQLVDQLAKGGDD-VAVIDLHQAAQLFRN 129 IERE+ L+S S+ A ASYA+I++ ++ D+L D+LA DD V+V+DLHQA+QLFRN Sbjct: 72 IERESARLASTGSLDAMRASYADIIRQLQLFDRLSDRLAAANDDDVSVLDLHQASQLFRN 131 Query: 130 TANIMAQLRESEL-----RTPKLPP--ARLAQGGGREAAPVVPFRAELHRQSKALVDSAR 182 T NI+AQLRESEL P + + A+ + A F L +Q+ A+V SA+ Sbjct: 132 TVNIVAQLRESELSAAIAHAPNMADQNSTAARADSQTLASRDRFSDGLRQQASAMVASAQ 191 Query: 183 QQSTRFTQDYRVAVRELAETSARNQRWITGLLVVSLTLAWLVGHGFLGRQVLARLQKVSH 242 QS R TQ+++ AV+ LA TSAR++RWITGL+ VSL AWLV H FLG+ VLARL+ VS Sbjct: 192 LQSDRCTQEFQQAVQRLAATSARHERWITGLVAVSLLFAWLVAHAFLGKHVLARLEVVSS 251 Query: 243 SLRHGDPGDAL-CKVPVHGADEIGEMARAVEQFQADRVQLAVANQTLKSEKARQDELIRK 301 +LR GDP D V G DEIGEMARAVEQFQ DR QLA A L+ EKARQ+ LI + Sbjct: 252 NLRSGDPADEQHVSRMVKGRDEIGEMARAVEQFQDDRRQLAHAYAALREEKARQEALINE 311 Query: 302 LADAQSQLLQSEKMASIGQLAAGVAHEINNPVGFVNSNLGTLQRYVDEIMALLSAYEQSE 361 LA A SQLLQSEK+ASIGQLAAGVAHEINNPVGFVN+NLGTLQRY+ +++ L+AYE+SE Sbjct: 312 LAQAHSQLLQSEKLASIGQLAAGVAHEINNPVGFVNANLGTLQRYMADLLTALAAYERSE 371 Query: 362 AEMPEEIRRALAGHKARIDLDFLREDIASVFSESQDGLQRVIRIVQDLKTFSHVDEAEKQ 421 AE+ E R AL K ID+D+LR DI ++ SES +GLQRV RIVQ LK FSHVD+AEKQ Sbjct: 372 AELIAESRAALIELKREIDIDYLRSDIPTLLSESVEGLQRVKRIVQGLKDFSHVDKAEKQ 431 Query: 422 WANLEQGLDSTLNVVSHDLKYTAEIVKEYGGIPDIECLPFQLNQVFLNLFVNAGQAIEGR 481 WANLE LD+T+N+V ++LKY AE+ +E+G IP++EC+P QLNQVF+NL +NA Q+IEG Sbjct: 432 WANLESNLDTTINIVWNELKYKAELKREFGAIPELECIPSQLNQVFMNLLMNAAQSIEGH 491 Query: 482 GRIVLRTGHDEDQVWVEVEDSGKGIPEADLERIFEPFFTTKPVGTGTGLGLSLSYGIVAK 541 G IV+RTGHDE VW+EVEDSG+GI +RIF+PFFTTKPVGTGTGLGLS+SYGIV K Sbjct: 492 GHIVVRTGHDETSVWIEVEDSGQGIKPEHRDRIFDPFFTTKPVGTGTGLGLSISYGIVRK 551 Query: 542 HGGKITVRSEVGKGSVFRVSLPK 564 GG+I VRSEVG GS FRV LPK Sbjct: 552 QGGRIEVRSEVGHGSTFRVVLPK 574 >E1TI99.1 E1TI99_BURSG Histidine kinase Length = 585 Score = 632 bits (1630), Expect = e-179, Method: Compositional matrix adjust. Identities = 329/563 (58%), Positives = 410/563 (72%), Gaps = 9/563 (1%) Query: 11 PRLLKTQFLFAISGLAVLMLAGGLTAIYALHSAVAATKSLAEDRLLLMQQAQDLVEQTFL 70 PR L+ QF A L +L++ GLTA+Y L T+ LA L MQ A LV+ T L Sbjct: 12 PRSLRWQFTLATVVLTLLIVTSGLTAVYTLRVTTNETRLLATGELTRMQAADTLVQHTLL 71 Query: 71 IEREAYLLSSASSVAATTASYAEIVKHVEAVDQLVDQLAKGGDDVAVIDLHQAAQLFRNT 130 IEREA L+SA S+ A ASYA+I++ +E D+L D+LA DD++V+DLHQA+QLFRNT Sbjct: 72 IEREASRLASAGSLDAMRASYADILRQLETFDRLSDRLAAANDDLSVLDLHQASQLFRNT 131 Query: 131 ANIMAQLRESELRTPKLPPARLAQG---GGREAAPVVP-----FRAELHRQSKALVDSAR 182 NI+AQLRESELR P R A G G AA P F L +Q+ A+V SA+ Sbjct: 132 VNIVAQLRESELRAAIQPAPRAAAGQSDAGAHAASRPPASRDTFSDRLSQQASAMVASAQ 191 Query: 183 QQSTRFTQDYRVAVRELAETSARNQRWITGLLVVSLTLAWLVGHGFLGRQVLARLQKVSH 242 QS R TQ+++ AV++LA SARN+RWITGL+ VSL AWLV H FLG+ VLARL+ VS Sbjct: 192 LQSDRCTQEFQQAVQQLAGASARNERWITGLVAVSLLFAWLVAHAFLGKHVLARLEVVSS 251 Query: 243 SLRHGDPGDALCKVPV-HGADEIGEMARAVEQFQADRVQLAVANQTLKSEKARQDELIRK 301 +LR G+ V DEIG+MARAVEQFQ DR +LA A L+ EK RQ+ LI + Sbjct: 252 NLRSGEAAQEARAARVLTDRDEIGDMARAVEQFQQDRRELARAYAALREEKIRQEALIDE 311 Query: 302 LADAQSQLLQSEKMASIGQLAAGVAHEINNPVGFVNSNLGTLQRYVDEIMALLSAYEQSE 361 LA A SQLLQSEK+ASIGQLAAGVAHEINNPVGFVN+NLGTLQRYV +++ L+AYE++E Sbjct: 312 LAQAHSQLLQSEKLASIGQLAAGVAHEINNPVGFVNANLGTLQRYVADLLTALAAYERTE 371 Query: 362 AEMPEEIRRALAGHKARIDLDFLREDIASVFSESQDGLQRVIRIVQDLKTFSHVDEAEKQ 421 AE+ E R LA K ID+D+LR DI ++ SES +GLQRV RIVQ LK FSHVD+AEKQ Sbjct: 372 AELIAESRATLAALKREIDIDYLRTDIPALLSESVEGLQRVKRIVQGLKDFSHVDKAEKQ 431 Query: 422 WANLEQGLDSTLNVVSHDLKYTAEIVKEYGGIPDIECLPFQLNQVFLNLFVNAGQAIEGR 481 WANLE LD+T++VV ++LKY AE+ +E+G IP++EC+P QL+QVF+NL +NA Q+IEG Sbjct: 432 WANLESNLDTTIDVVWNELKYKAELEREFGAIPELECIPSQLSQVFMNLLMNAAQSIEGH 491 Query: 482 GRIVLRTGHDEDQVWVEVEDSGKGIPEADLERIFEPFFTTKPVGTGTGLGLSLSYGIVAK 541 GRI +RTGHDE VWVE+ED+G+GI +RIF+PFFTT+PVGTG GLGLS+SYGIV K Sbjct: 492 GRITVRTGHDESTVWVEIEDTGQGIKPEHRDRIFDPFFTTRPVGTGAGLGLSISYGIVRK 551 Query: 542 HGGKITVRSEVGKGSVFRVSLPK 564 GG+I VRS+VG+GS FRV LPK Sbjct: 552 QGGRIEVRSQVGQGSTFRVILPK 574 >D8N154.1 D8N154_RALSO Putative sensor signal transduction histidine kinase EC=2.7.13.3 Length = 562 Score = 608 bits (1567), Expect = e-171, Method: Compositional matrix adjust. Identities = 327/559 (58%), Positives = 410/559 (73%), Gaps = 13/559 (2%) Query: 11 PRLLKTQFLFAISGLAVLMLAGGLTAIYALHSAVAATKSLAEDRLLLMQQAQDLVEQTFL 70 PR L+ Q LFA GLA+L+LAGG TA+YAL SA T+SLA+++L+ MQ AQDLV +T L Sbjct: 12 PRSLRRQILFAAGGLALLILAGGATALYALRSATDVTRSLADEQLVRMQDAQDLVRRTLL 71 Query: 71 IEREAYLLSSASSVAATTASYAEIVKHVEAVDQLVDQLAKGGDDVAVIDLHQAAQLFRNT 130 IER + LS A+S A A Y +IV + D+L +LA DD+ V+DLHQ++QLFRNT Sbjct: 72 IERASAQLSDAASADAVRARYTDIVAQLTVFDRLALRLADDDDDLTVLDLHQSSQLFRNT 131 Query: 131 ANIMAQLRESELRT-----PKLPPARLAQGGGREAAPVVPFRAELHRQSKALVDSARQQS 185 NI+AQLRES+L++ P PPA GR+ AP FR ++ +Q++ALV +A+ Q Sbjct: 132 INIVAQLRESQLQSAARASPGKPPA-----TGRDEAP---FRDDVRQQAEALVAAAQLQL 183 Query: 186 TRFTQDYRVAVRELAETSARNQRWITGLLVVSLTLAWLVGHGFLGRQVLARLQKVSHSLR 245 R TQ+YR A++ LA TSARNQRW+T LL+ SL W+V H FLGR VLARLQ+VS L Sbjct: 184 DRHTQNYRAAIQALARTSARNQRWVTALLIASLAFGWIVVHHFLGRHVLARLQRVSRRLL 243 Query: 246 HGDPGDALCKVPVHGADEIGEMARAVEQFQADRVQLAVANQTLKSEKARQDELIRKLADA 305 G DEIGEMARAVE FQ DR QLA+ANQ L+ EKARQ+ LIR+LA A Sbjct: 244 ATGVDAGPAAAVAAGDDEIGEMARAVEAFQQDRRQLALANQALREEKARQEALIRELAQA 303 Query: 306 QSQLLQSEKMASIGQLAAGVAHEINNPVGFVNSNLGTLQRYVDEIMALLSAYEQSEAEMP 365 SQLLQSEKMASIGQLAAGVAHEINNP+GFVN+N+GTLQRYV++++ ++A+E E+ +P Sbjct: 304 HSQLLQSEKMASIGQLAAGVAHEINNPIGFVNANVGTLQRYVNDLLHAIAAFESRESGLP 363 Query: 366 EEIRRALAGHKARIDLDFLREDIASVFSESQDGLQRVIRIVQDLKTFSHVDEAEKQWANL 425 + R AL K IDL +LREDI ++FSE+ DGL+RV +VQ LK FSHVD EKQ ANL Sbjct: 364 PDARAALGALKQEIDLPYLREDIPTLFSETLDGLRRVKDVVQSLKDFSHVDGVEKQRANL 423 Query: 426 EQGLDSTLNVVSHDLKYTAEIVKEYGGIPDIECLPFQLNQVFLNLFVNAGQAIEGRGRIV 485 E LDST+ +V ++LKY E+++EYG +P+IEC+P QL QVF+NL VNA Q+IE GRI Sbjct: 424 EHQLDSTVKIVWNELKYKVELIREYGAVPEIECMPSQLAQVFMNLLVNAAQSIEQHGRIT 483 Query: 486 LRTGHDEDQVWVEVEDSGKGIPEADLERIFEPFFTTKPVGTGTGLGLSLSYGIVAKHGGK 545 LRTGHD+D +WVE+ED+G GI L RIF+PFFTTKPVG GTGLGLS+SYGIV KHGG+ Sbjct: 484 LRTGHDKDAIWVEIEDTGSGIDPRHLGRIFDPFFTTKPVGVGTGLGLSISYGIVKKHGGR 543 Query: 546 ITVRSEVGKGSVFRVSLPK 564 I V SE G GS F+V LP+ Sbjct: 544 IEVVSEPGNGSRFKVVLPR 562 >Q21X00.1 Q21X00_RHOFD PAS/PAC sensor signal transduction histidine kinase EC=2.7.3.- Length = 553 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 189/285 (66%), Positives = 234/285 (82%) Query: 281 LAVANQTLKSEKARQDELIRKLADAQSQLLQSEKMASIGQLAAGVAHEINNPVGFVNSNL 340 L AN+TL+ EK RQ LI++L +AQ+QLLQSE+MASIGQLAAGVAHEINNPVGFVNSNL Sbjct: 265 LNTANETLQQEKERQAILIKRLEEAQNQLLQSERMASIGQLAAGVAHEINNPVGFVNSNL 324 Query: 341 GTLQRYVDEIMALLSAYEQSEAEMPEEIRRALAGHKARIDLDFLREDIASVFSESQDGLQ 400 G+LQRYV +++ LLS YE++E +P + + KA ID++FLRED+A++ ES DGL+ Sbjct: 325 GSLQRYVTDMLRLLSVYEKAEGALPGAATQEINQVKADIDVEFLREDVANLLVESLDGLK 384 Query: 401 RVIRIVQDLKTFSHVDEAEKQWANLEQGLDSTLNVVSHDLKYTAEIVKEYGGIPDIECLP 460 RV RIVQDLK FSHVDE+E+QWA+LE GL+STL VV ++LKY AE++KE+ GIP +EC Sbjct: 385 RVTRIVQDLKDFSHVDESERQWADLEAGLESTLRVVWNELKYKAEVIKEFAGIPQVECFA 444 Query: 461 FQLNQVFLNLFVNAGQAIEGRGRIVLRTGHDEDQVWVEVEDSGKGIPEADLERIFEPFFT 520 FQLNQVF+NL +NA AIEGRG I +RTGHD+ VWVEV+DSG+GI L RIFEPFFT Sbjct: 445 FQLNQVFMNLLINASHAIEGRGTIAIRTGHDDACVWVEVQDSGRGIQPEHLSRIFEPFFT 504 Query: 521 TKPVGTGTGLGLSLSYGIVAKHGGKITVRSEVGKGSVFRVSLPKR 565 TKPVG GTGLGLSL+YGIV KH G+I V+SE+G+G+VFRV LPK+ Sbjct: 505 TKPVGQGTGLGLSLAYGIVKKHDGRIEVKSELGQGTVFRVILPKK 549