BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0026.0014.p (313 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IVV6.1 D8IVV6_HERSS DeoR family transcription regulator protein 459 e-127 Q92S12.1 Q92S12_RHIME Transcription regulator DeoR family 262 6e-68 E0K7F6.1 E0K7F6_RHIME Transcriptional regulator, DeoR family 262 6e-68 E0JH17.1 E0JH17_RHIME Transcriptional regulator, DeoR family 262 6e-68 A3VEE9.1 A3VEE9_9RHOB Putative transcription regulator protein 261 7e-68 >D8IVV6.1 D8IVV6_HERSS DeoR family transcription regulator protein Length = 267 Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust. Identities = 217/261 (83%), Positives = 238/261 (91%) Query: 46 MINHKRRKRMLSLLTEHANASVEQLCQWLNASAATVRRDISWLAERNMLNRIRGGAERLA 105 MINH RRKR+LSLL EH +VEQ C LNASAATVRRDI+WLAER+ML R RGGAERLA Sbjct: 1 MINHNRRKRLLSLLGEHTALTVEQFCHLLNASAATVRRDIAWLAERDMLTRTRGGAERLA 60 Query: 106 PKRNAFSLSGETFQNSLERFPAEKRAIARHAAGMCEDGETVIINGGTTTFMMAEFLAHKQ 165 KR+AF+LSGETFQ SL R PA+KRAIARHAA MC++GET+IINGGTTTF+MAE+LA K+ Sbjct: 61 QKRSAFALSGETFQASLARQPAQKRAIARHAAEMCDNGETIIINGGTTTFLMAEYLAQKR 120 Query: 166 LKILTNSFLMAERLLTTSENQIIVPGGQVYREQNVILSPFDNDITQHHYAGKMFMGVYGL 225 LKILTNSFLMAERLLTTSENQIIVPGGQ+YREQNVILSPF+NDITQHHYA KMFMG+YG+ Sbjct: 121 LKILTNSFLMAERLLTTSENQIIVPGGQIYREQNVILSPFENDITQHHYASKMFMGIYGV 180 Query: 226 SMLGLMEVDPLLIQAEKRLLGQAEQLIVLVDSSKFSRKAGLILCGLNRVSCLITDTGVSD 285 SMLGLME DPLLIQAEKRLLGQAEQL+VL DSSKFSRKAGLILCGLNRV+CL+TDTG+SD Sbjct: 181 SMLGLMEADPLLIQAEKRLLGQAEQLVVLADSSKFSRKAGLILCGLNRVNCLVTDTGISD 240 Query: 286 AAVQMMEQAGVKVAAVAPESE 306 AA QMMEQAGVKV VAPE E Sbjct: 241 AAAQMMEQAGVKVVTVAPEHE 261 >Q92S12.1 Q92S12_RHIME Transcription regulator DeoR family Length = 270 Score = 262 bits (669), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 131/265 (49%), Positives = 186/265 (70%), Gaps = 3/265 (1%) Query: 46 MINHKRRKRMLSLLTEHANASVEQLCQWLNASAATVRRDISWLAERNMLNRIRGGAERLA 105 M +R + +LS + E A+V +L +S AT+RRDI+ L + L R+RGGAE + Sbjct: 1 MHEKERHRIILSAVQEKPVATVPELVDLTGSSEATIRRDIAALHVQKRLRRVRGGAEAIN 60 Query: 106 PKRNAFSLSGETFQNSLERFPAEKRAIARHAAGMCEDGETVIINGGTTTFMMAEFLAHKQ 165 P + L+G F+ + EK+AIAR A +C+DGE +IINGGTTTF M FLA+++ Sbjct: 61 PPQ-FVGLAGRPFRVNEGLHAREKQAIAREAVALCQDGEPIIINGGTTTFQMVHFLANRR 119 Query: 166 LKILTNSFLMAERLLTTSENQIIVPGGQVYREQNVILSPFDNDITQHHYAGKMFMGVYGL 225 +++ TNSF +AE LL S+N +++ GG +YREQN+ILSPF+ND+T++ YA +MFMG GL Sbjct: 120 MQVFTNSFPIAEHLLKHSKNTVMLSGGTIYREQNIILSPFENDVTRNFYARRMFMGAQGL 179 Query: 226 SMLGLMEVDPLLIQAEKRLLGQAEQLIVLVDSSKFSRKAGLILCGLNRVSCLITDTGVSD 285 LGLME DPLLIQAE++L+ QA+ L+VLVDSSKF R++ LILCGL R++ +ITD+G+ D Sbjct: 180 GPLGLMEADPLLIQAEQKLIDQADDLVVLVDSSKFHRRSSLILCGLKRIATVITDSGIED 239 Query: 286 AAVQMMEQAGVK--VAAVAPESELE 308 M+E AGV VAA + +++ E Sbjct: 240 RHASMLENAGVSLIVAAQSAKADAE 264 >E0K7F6.1 E0K7F6_RHIME Transcriptional regulator, DeoR family Length = 270 Score = 262 bits (669), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 131/265 (49%), Positives = 186/265 (70%), Gaps = 3/265 (1%) Query: 46 MINHKRRKRMLSLLTEHANASVEQLCQWLNASAATVRRDISWLAERNMLNRIRGGAERLA 105 M +R + +LS + E A+V +L +S AT+RRDI+ L + L R+RGGAE + Sbjct: 1 MHEKERHRIILSAVQEKPVATVPELVDLTGSSEATIRRDIAALHVQKRLRRVRGGAEAIN 60 Query: 106 PKRNAFSLSGETFQNSLERFPAEKRAIARHAAGMCEDGETVIINGGTTTFMMAEFLAHKQ 165 P + L+G F+ + EK+AIAR A +C+DGE +IINGGTTTF M FLA+++ Sbjct: 61 PPQ-FVGLAGRPFRVNEGLHAREKQAIAREAVALCQDGEPIIINGGTTTFQMVHFLANRR 119 Query: 166 LKILTNSFLMAERLLTTSENQIIVPGGQVYREQNVILSPFDNDITQHHYAGKMFMGVYGL 225 +++ TNSF +AE LL S+N +++ GG +YREQN+ILSPF+ND+T++ YA +MFMG GL Sbjct: 120 MQVFTNSFPIAEHLLKHSKNTVMLSGGTIYREQNIILSPFENDVTRNFYARRMFMGAQGL 179 Query: 226 SMLGLMEVDPLLIQAEKRLLGQAEQLIVLVDSSKFSRKAGLILCGLNRVSCLITDTGVSD 285 LGLME DPLLIQAE++L+ QA+ L+VLVDSSKF R++ LILCGL R++ +ITD+G+ D Sbjct: 180 GPLGLMEADPLLIQAEQKLIDQADDLVVLVDSSKFHRRSSLILCGLKRIATVITDSGIED 239 Query: 286 AAVQMMEQAGVK--VAAVAPESELE 308 M+E AGV VAA + +++ E Sbjct: 240 RHASMLENAGVSLIVAAQSAKADAE 264 >E0JH17.1 E0JH17_RHIME Transcriptional regulator, DeoR family Length = 270 Score = 262 bits (669), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 131/265 (49%), Positives = 186/265 (70%), Gaps = 3/265 (1%) Query: 46 MINHKRRKRMLSLLTEHANASVEQLCQWLNASAATVRRDISWLAERNMLNRIRGGAERLA 105 M +R + +LS + E A+V +L +S AT+RRDI+ L + L R+RGGAE + Sbjct: 1 MHEKERHRIILSAVQEKPVATVPELVDLTGSSEATIRRDIAALHVQKRLRRVRGGAEAIN 60 Query: 106 PKRNAFSLSGETFQNSLERFPAEKRAIARHAAGMCEDGETVIINGGTTTFMMAEFLAHKQ 165 P + L+G F+ + EK+AIAR A +C+DGE +IINGGTTTF M FLA+++ Sbjct: 61 PPQ-FVGLAGRPFRVNEGLHAREKQAIAREAVALCQDGEPIIINGGTTTFQMVHFLANRR 119 Query: 166 LKILTNSFLMAERLLTTSENQIIVPGGQVYREQNVILSPFDNDITQHHYAGKMFMGVYGL 225 +++ TNSF +AE LL S+N +++ GG +YREQN+ILSPF+ND+T++ YA +MFMG GL Sbjct: 120 MQVFTNSFPIAEHLLKHSKNTVMLSGGTIYREQNIILSPFENDVTRNFYARRMFMGAQGL 179 Query: 226 SMLGLMEVDPLLIQAEKRLLGQAEQLIVLVDSSKFSRKAGLILCGLNRVSCLITDTGVSD 285 LGLME DPLLIQAE++L+ QA+ L+VLVDSSKF R++ LILCGL R++ +ITD+G+ D Sbjct: 180 GPLGLMEADPLLIQAEQKLIDQADDLVVLVDSSKFHRRSSLILCGLKRIATVITDSGIED 239 Query: 286 AAVQMMEQAGVK--VAAVAPESELE 308 M+E AGV VAA + +++ E Sbjct: 240 RHASMLENAGVSLIVAAQSAKADAE 264 >A3VEE9.1 A3VEE9_9RHOB Putative transcription regulator protein Length = 266 Score = 261 bits (668), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 125/249 (50%), Positives = 177/249 (71%), Gaps = 1/249 (0%) Query: 50 KRRKRMLSLLTEHANASVEQLCQWLNASAATVRRDISWLAERNMLNRIRGGAERLAPKRN 109 +R + +LS + E +V +L S AT+RRDIS L ++ L R+RGGAE L P Sbjct: 5 ERHRLILSAVQERPIVTVGELVALTETSEATIRRDISTLDKQKRLRRVRGGAEALTPP-P 63 Query: 110 AFSLSGETFQNSLERFPAEKRAIARHAAGMCEDGETVIINGGTTTFMMAEFLAHKQLKIL 169 L+G F + EK+ IAR A +C+DG+ +IINGGTTTF M LA+++++++ Sbjct: 64 LPGLAGRPFVVNQTINAEEKQVIAREAVALCDDGDPIIINGGTTTFQMVHHLANRRVQVM 123 Query: 170 TNSFLMAERLLTTSENQIIVPGGQVYREQNVILSPFDNDITQHHYAGKMFMGVYGLSMLG 229 TNSF +AE LL ++N ++VPGG +YREQN+ILSPF+ND+T+H+YA +MFMG YG+ +G Sbjct: 124 TNSFPIAEHLLKHTKNTVMVPGGALYREQNIILSPFENDMTRHYYAKRMFMGAYGVGPMG 183 Query: 230 LMEVDPLLIQAEKRLLGQAEQLIVLVDSSKFSRKAGLILCGLNRVSCLITDTGVSDAAVQ 289 LME DPLLIQAE++L+GQA++L+VLVDSSKF ++ L+LCGL R+ +ITD G+SD Sbjct: 184 LMENDPLLIQAEEKLIGQADELVVLVDSSKFENRSSLVLCGLERIDVVITDEGISDRVAS 243 Query: 290 MMEQAGVKV 298 M+E A V+V Sbjct: 244 MLEAAEVRV 252