BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0026.0006.p         (150 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IR69.1 D8IR69_HERSS Excinuclease ATPase subunit protein             188   2e-46
F0M0C2.1 F0M0C2_VIBFU Excinuclease ATPase subunit                     128   2e-28
C9PH03.1 C9PH03_VIBFU Excinuclease ATPase subunit                     128   3e-28
B3PFH8.1 B3PFH8_CELJU Excinuclease ATPase subunit                     120   6e-26
E1T6E0.1 E1T6E0_BURSG Putative excinuclease, ATPase subunit           120   8e-26

>D8IR69.1 D8IR69_HERSS Excinuclease ATPase subunit protein
          Length = 147

 Score =  188 bits (478), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 90/146 (61%), Positives = 111/146 (76%), Gaps = 1/146 (0%)

Query: 3   KICSLLIAAGILSIASLPVQARDTKHLLSIEEGLNTKDAESKLSGTVKFYFADQPHPAVL 62
           K  SL +A  +   A+LP QARDTKHLL ++   + KD E  L G+VKFYFA QPHPAVL
Sbjct: 2   KTSSLALAVTLALSAALPAQARDTKHLLPLDSASSMKDKEGVLDGSVKFYFAGQPHPAVL 61

Query: 63  EKLATDFSNRKTNSFGKSDEVACNWAFLSALLAFETRARQLGANAVVNIVSYYKKDEMAS 122
           EK++TD +N KTN+FGKSDE AC WAFLS L+    +A++LG N VVNIVSYYKK+EMAS
Sbjct: 62  EKISTDVTNMKTNAFGKSDEEACKWAFLSGLVQLHKKAKELGGNGVVNIVSYYKKNEMAS 121

Query: 123 TSKFECHAGAIIAGVALKGXNFVKIA 148
            ++FECHAGA +AGVALKG + VK+ 
Sbjct: 122 ATEFECHAGATMAGVALKG-DIVKLG 146


>F0M0C2.1 F0M0C2_VIBFU Excinuclease ATPase subunit
          Length = 144

 Score =  128 bits (322), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 68/141 (48%), Positives = 93/141 (65%), Gaps = 2/141 (1%)

Query: 1   MQKICSLLIAAGILSIASLPVQARDTKHLLSIEEGLNTKDAESKLSGTVKFYFADQPHPA 60
           M+KI   +++  +L  AS    ARD     SI++ LN + A++KL   V+F+F DQ HPA
Sbjct: 1   MKKILPAILSTLVLCSAS--AVARDDVGNYSIQDALNQEVAQTKLGDDVQFFFGDQAHPA 58

Query: 61  VLEKLATDFSNRKTNSFGKSDEVACNWAFLSALLAFETRARQLGANAVVNIVSYYKKDEM 120
           VL+ +    +N+KTN+F KSDE AC W FLSA++A + RA + G NAVVNI S YK +  
Sbjct: 59  VLKTMGEFKTNKKTNAFNKSDEEACQWVFLSAMIALKDRAIKEGGNAVVNIKSNYKNNLT 118

Query: 121 ASTSKFECHAGAIIAGVALKG 141
           +S   F+C AGA+IAGVAL G
Sbjct: 119 SSEDTFQCGAGAVIAGVALTG 139


>C9PH03.1 C9PH03_VIBFU Excinuclease ATPase subunit
          Length = 144

 Score =  128 bits (322), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 67/141 (47%), Positives = 93/141 (65%), Gaps = 2/141 (1%)

Query: 1   MQKICSLLIAAGILSIASLPVQARDTKHLLSIEEGLNTKDAESKLSGTVKFYFADQPHPA 60
           M+KI   +++  +L + S    ARD     SI++ LN + A++KL   V+F+F DQ HPA
Sbjct: 1   MKKILPAILS--MLVLCSASAVARDDVGNYSIQDALNQEVAQTKLGDDVQFFFGDQVHPA 58

Query: 61  VLEKLATDFSNRKTNSFGKSDEVACNWAFLSALLAFETRARQLGANAVVNIVSYYKKDEM 120
           VL+ +    +N+KTN+F KSDE AC W FLSA++A + RA + G NAVVNI S YK +  
Sbjct: 59  VLKTMGEFKTNKKTNAFNKSDEEACQWVFLSAMIALKDRAIKEGGNAVVNIKSNYKNNLT 118

Query: 121 ASTSKFECHAGAIIAGVALKG 141
           +S   F+C AGA+IAGVAL G
Sbjct: 119 SSEDTFQCGAGAVIAGVALTG 139


>B3PFH8.1 B3PFH8_CELJU Excinuclease ATPase subunit
          Length = 146

 Score =  120 bits (301), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 61/128 (47%), Positives = 84/128 (65%)

Query: 14  LSIASLPVQARDTKHLLSIEEGLNTKDAESKLSGTVKFYFADQPHPAVLEKLATDFSNRK 73
           L+  +    ARD     SI E L+T+ A++ L  +VKFYF +QPH A+++K     +N+K
Sbjct: 13  LATCAATTLARDDIQEYSIAEALSTEQAKNILGTSVKFYFGNQPHGAIVKKYGEFGTNKK 72

Query: 74  TNSFGKSDEVACNWAFLSALLAFETRARQLGANAVVNIVSYYKKDEMASTSKFECHAGAI 133
           TN  GKSD+ AC WAFLSA+ +   RA + GANAVVNI S Y+    +ST  F+C +GAI
Sbjct: 73  TNGVGKSDKQACEWAFLSAMKSLRERAEREGANAVVNIRSNYRNATTSSTDTFKCGSGAI 132

Query: 134 IAGVALKG 141
           ++GVAL G
Sbjct: 133 MSGVALLG 140


>E1T6E0.1 E1T6E0_BURSG Putative excinuclease, ATPase subunit
          Length = 147

 Score =  120 bits (300), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 62/135 (45%), Positives = 88/135 (65%), Gaps = 2/135 (1%)

Query: 7   LLIAAGILSIASLPVQARDTKHLLSIEEGLNTKDAESKLSGTVKFYFADQPHPAVLEKLA 66
           + +AA    +++ P  ARDT     IE+ L+++    K+S  +  YFA Q HPAV++ + 
Sbjct: 8   VTLAASFSMLSTAPALARDTVANYPIEQALHSEPG--KVSDDIALYFAGQRHPAVVKSIG 65

Query: 67  TDFSNRKTNSFGKSDEVACNWAFLSALLAFETRARQLGANAVVNIVSYYKKDEMASTSKF 126
              +N+KTN+FGKSDE AC   FLSA++  + RAR+ G NAV+NI S YK +   S ++F
Sbjct: 66  EFATNKKTNAFGKSDEAACQHVFLSAVIELQERARKEGGNAVINIKSNYKNEVRESATEF 125

Query: 127 ECHAGAIIAGVALKG 141
            C AGA+IAGVALKG
Sbjct: 126 TCGAGAVIAGVALKG 140