BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0206.p         (133 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8ISD3.1 D8ISD3_HERSS Chemotaxis regulator protein                    238   2e-61
D8IQ22.1 D8IQ22_HERSS Chemotaxis regulator transmits chemorecept...   221   2e-56
D8IQU9.1 D8IQU9_HERSS Chemotaxis response regulator receiver dom...   204   5e-51
F1W0D8.1 F1W0D8_9BURK Chemotaxis regulator-transmits chemorecept...   181   3e-44
A1K5H2.1 A1K5H2_AZOSB Chemotaxis response regulator                   174   3e-42

>D8ISD3.1 D8ISD3_HERSS Chemotaxis regulator protein
          Length = 135

 Score =  238 bits (608), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 112/131 (85%), Positives = 126/131 (96%)

Query: 2   ADDQYFLVVDDFSTMRRIVTGLLKELEFTKMAEAEDGAAAMKVLEGGAAPITFVLTDWNM 61
           ADDQYFLVVDDFSTMRRIV+GLLKELE+TK+ EA+DG++A+K+LE GA P+TFVLTDWNM
Sbjct: 3   ADDQYFLVVDDFSTMRRIVSGLLKELEYTKIVEADDGSSALKILEAGALPVTFVLTDWNM 62

Query: 62  PVMDGLALLKKIRATPSLAHLPVLMITAEAKKENIVEAAQAGADGYIVKPFNAATLKDKI 121
           PVMDGL LLKKIRATPS+AHLPVLMITAEAKKENIVEAAQ+GADGYIVKPFNAATLKDKI
Sbjct: 63  PVMDGLTLLKKIRATPSMAHLPVLMITAEAKKENIVEAAQSGADGYIVKPFNAATLKDKI 122

Query: 122 EKIIHRRANMA 132
           EKI+ RRA++A
Sbjct: 123 EKILARRAHLA 133


>D8IQ22.1 D8IQ22_HERSS Chemotaxis regulator transmits chemoreceptor signals
           to flagellar motor components protein
          Length = 133

 Score =  221 bits (564), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 104/130 (80%), Positives = 121/130 (93%)

Query: 2   ADDQYFLVVDDFSTMRRIVTGLLKELEFTKMAEAEDGAAAMKVLEGGAAPITFVLTDWNM 61
           A +Q+FLVVDDFSTMRRIV+GLLKELE+TK+ EA+DG++A+K+LE GA+ ITFVLTDWNM
Sbjct: 3   ATEQHFLVVDDFSTMRRIVSGLLKELEYTKIVEADDGSSALKILESGASNITFVLTDWNM 62

Query: 62  PVMDGLALLKKIRATPSLAHLPVLMITAEAKKENIVEAAQAGADGYIVKPFNAATLKDKI 121
           PVMDGL LLKKIR+TP+L+HLPVLMITAEAKKENIV AAQ GADGYIVKPFNA TLK+KI
Sbjct: 63  PVMDGLTLLKKIRSTPALSHLPVLMITAEAKKENIVMAAQEGADGYIVKPFNATTLKEKI 122

Query: 122 EKIIHRRANM 131
           EKI+ RRA+M
Sbjct: 123 EKILARRAHM 132


>D8IQU9.1 D8IQU9_HERSS Chemotaxis response regulator receiver domain protein
          Length = 134

 Score =  204 bits (518), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 95/132 (71%), Positives = 112/132 (84%)

Query: 1   MADDQYFLVVDDFSTMRRIVTGLLKELEFTKMAEAEDGAAAMKVLEGGAAPITFVLTDWN 60
           M+ DQ+FLVVDDFSTMRRI+ GLLKELE+ K+ +A+DG +A K+LE GA PI+FV+TDWN
Sbjct: 1   MSTDQHFLVVDDFSTMRRIIIGLLKELEYLKVTDADDGTSAWKILESGALPISFVITDWN 60

Query: 61  MPVMDGLALLKKIRATPSLAHLPVLMITAEAKKENIVEAAQAGADGYIVKPFNAATLKDK 120
           MP MDGL LLKKIR TP L  LPVLM++AEAKKENIV AA+ GADGYIVKPFNAATL DK
Sbjct: 61  MPGMDGLGLLKKIRETPRLKRLPVLMVSAEAKKENIVLAAETGADGYIVKPFNAATLDDK 120

Query: 121 IEKIIHRRANMA 132
           I KI+ RR++M 
Sbjct: 121 ISKILQRRSSMG 132


>F1W0D8.1 F1W0D8_9BURK Chemotaxis regulator-transmits chemoreceptor signals
           to flagelllar motor components CheY
          Length = 152

 Score =  181 bits (460), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 87/132 (65%), Positives = 109/132 (82%), Gaps = 3/132 (2%)

Query: 1   MADDQYFLVVDDFSTMRRIVTGLLKELEFTKMAEAEDGAAAMKVLEGG---AAPITFVLT 57
           MA +  FLVVDDFSTMRRI++GLLKE+  +K+ EAEDGAAA+++L+       PI FV+T
Sbjct: 18  MASELNFLVVDDFSTMRRIISGLLKEIGHSKIHEAEDGAAALRLLQSAQTHGVPIDFVIT 77

Query: 58  DWNMPVMDGLALLKKIRATPSLAHLPVLMITAEAKKENIVEAAQAGADGYIVKPFNAATL 117
           DWNMPVMDGL LLK+IR  P+L HLPVLM+TAE+KKENI+ AA AGADGYIVKPF AATL
Sbjct: 78  DWNMPVMDGLELLKRIRLDPALNHLPVLMVTAESKKENIIAAAHAGADGYIVKPFTAATL 137

Query: 118 KDKIEKIIHRRA 129
           K+K++KI+ ++ 
Sbjct: 138 KEKLDKIMLKKG 149


>A1K5H2.1 A1K5H2_AZOSB Chemotaxis response regulator
          Length = 133

 Score =  174 bits (442), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 90/128 (70%), Positives = 101/128 (78%), Gaps = 3/128 (2%)

Query: 1   MADDQY-FLVVDDFSTMRRIVTGLLKELEFTKMAEAEDGAAAMKVLEGGAAPITFVLTDW 59
           MAD +  FLVVDDFSTMRRIV  LLKEL +T + EAEDGA A++ L   +AP  FV+TDW
Sbjct: 1   MADPKMKFLVVDDFSTMRRIVRNLLKELGYTNVDEAEDGAVALQKL--NSAPFDFVVTDW 58

Query: 60  NMPVMDGLALLKKIRATPSLAHLPVLMITAEAKKENIVEAAQAGADGYIVKPFNAATLKD 119
           NMP MDGL LL+ IR TP L HLPVLMITAEAKKENI+ AAQAGA GYIVKPF AATL +
Sbjct: 59  NMPNMDGLTLLQTIRQTPQLKHLPVLMITAEAKKENIIAAAQAGASGYIVKPFTAATLAE 118

Query: 120 KIEKIIHR 127
           K+EKI  R
Sbjct: 119 KLEKIFER 126