BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0025.0184.p (334 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q98FC1.1 Q98FC1_RHILO Transcriptional regulator (AraC-family) 401 e-110 D0KDA2.1 D0KDA2_PECWW Transcriptional regulator, AraC family 400 e-109 B0T033.1 B0T033_CAUSK Transcriptional regulator, AraC family 393 e-107 D5C8X5.1 D5C8X5_ENTCC Transcriptional activator FtrA 382 e-104 A4WAD1.1 A4WAD1_ENT38 Transcriptional regulator, AraC family wit... 375 e-102 >Q98FC1.1 Q98FC1_RHILO Transcriptional regulator (AraC-family) Length = 332 Score = 401 bits (1031), Expect = e-110, Method: Compositional matrix adjust. Identities = 180/314 (57%), Positives = 238/314 (75%) Query: 18 ANPLVVVVAYNGLCTFEFAIAVEVFGLDRPEMGANWYRFAVAAVDEGPLRGTAGIRFLAD 77 +N LVV +AY+GLCTFEF +A E+F L RPEMG++WYRFAVA +D G +R G+R +AD Sbjct: 12 SNRLVVAIAYDGLCTFEFGVAAEMFALPRPEMGSDWYRFAVAGIDAGEMRAMGGVRIVAD 71 Query: 78 GDCELIKQAGTIVIPGWRGLDAPVPQHLSEALQVAHKKGARIMSICSGVAVMAAAGLLHG 137 G +LI +AGT+++PGWRG+D PVP L EAL+ A ++GARI+SICSGV V+AAAGLL G Sbjct: 72 GGPDLIGEAGTVIVPGWRGVDCPVPPLLIEALRAASERGARILSICSGVFVLAAAGLLSG 131 Query: 138 RKVTLHWKQALHLAQHYPDVIVQPDVLYVDDGDILSSTGGAGGIDLCLHLIRRDFGTKAA 197 +K T HW+ + L + YPD+ V PDVLY+D+G++L+S G A GIDLCLHL+RRDFGTKAA Sbjct: 132 KKATTHWRYSDRLREMYPDITVVPDVLYIDEGNVLTSAGSAAGIDLCLHLVRRDFGTKAA 191 Query: 198 NVVARRMIVTPHRDGGQAQFIEHAVPELHEAGKLGSLLDEMRAHLAKTYSIEEMARFVNM 257 N+VARR++V PHRDGGQAQ++E +VPE HE G+LG L+D MRA +A Y + +A M Sbjct: 192 NMVARRLVVPPHRDGGQAQYVESSVPEPHERGRLGPLIDRMRADIAADYPVATLADLAGM 251 Query: 258 SRRTFLRRFTSAMGTTPVRWLVLERLAKAVDYLENTVISIEEIARLIGFSSTSTFRQQFQ 317 S RTFLRRF +A G TP RWL+ ERL++A LE+T + IE IA GF + +T R F+ Sbjct: 252 SERTFLRRFAAATGVTPARWLLSERLSRARTLLEDTALPIERIAETAGFGAAATLRHHFR 311 Query: 318 KRYSLSPMAYRKMF 331 ++++ +P AYR F Sbjct: 312 RQFATTPAAYRARF 325 >D0KDA2.1 D0KDA2_PECWW Transcriptional regulator, AraC family Length = 331 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 187/316 (59%), Positives = 240/316 (75%) Query: 19 NPLVVVVAYNGLCTFEFAIAVEVFGLDRPEMGANWYRFAVAAVDEGPLRGTAGIRFLADG 78 NPLVV +AY+GLCTFEF IAVEVFGL RPEMG NWY+FAVA ++ G +R T GI +ADG Sbjct: 3 NPLVVALAYDGLCTFEFGIAVEVFGLPRPEMGDNWYQFAVAGLENGAMRATGGIHVVADG 62 Query: 79 DCELIKQAGTIVIPGWRGLDAPVPQHLSEALQVAHKKGARIMSICSGVAVMAAAGLLHGR 138 EL+ QAGTI+IPGW+G D VP HL +AL+ AH++GAR++SICSGV V+AA GLL GR Sbjct: 63 GLELLIQAGTIIIPGWKGSDVAVPNHLVDALRQAHQQGARLLSICSGVFVLAATGLLSGR 122 Query: 139 KVTLHWKQALHLAQHYPDVIVQPDVLYVDDGDILSSTGGAGGIDLCLHLIRRDFGTKAAN 198 + T HW+ + L YPD+ ++PDVLY+D+G IL+S G A GIDL LHLIRRD+G+KAAN Sbjct: 123 RATTHWRYSDTLKIQYPDINIEPDVLYIDEGTILTSAGSAAGIDLGLHLIRRDYGSKAAN 182 Query: 199 VVARRMIVTPHRDGGQAQFIEHAVPELHEAGKLGSLLDEMRAHLAKTYSIEEMARFVNMS 258 VARR++V PHRDGGQAQ+IE AVP +E +LG L+D +RA+LA+ YS+ ++A MS Sbjct: 183 QVARRLVVAPHRDGGQAQYIEKAVPVDYERSRLGPLIDHIRANLAEEYSVRKLATISCMS 242 Query: 259 RRTFLRRFTSAMGTTPVRWLVLERLAKAVDYLENTVISIEEIARLIGFSSTSTFRQQFQK 318 RTFLRRF++A GTTP RWL+ ERL A D LENT +SIE+IA +GF + ++ R F++ Sbjct: 243 PRTFLRRFSAATGTTPARWLLAERLNTARDLLENTRLSIEKIAETVGFGTAASLRHHFRQ 302 Query: 319 RYSLSPMAYRKMFSDR 334 + L+P YR F R Sbjct: 303 QLDLTPSTYRLRFGRR 318 >B0T033.1 B0T033_CAUSK Transcriptional regulator, AraC family Length = 333 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 185/327 (56%), Positives = 236/327 (72%), Gaps = 1/327 (0%) Query: 6 KFVPEQLSLPKLANPLVVVVAYNGLCTFEFAIAVEVFGLDRPEMGANWYRFAVAAVDEGP 65 K +P L AN VV +AY+GLCTFEF +AVE+FGL RPEMG NWY FA AAV+ GP Sbjct: 4 KIMPNPLRSTGPANRRVVALAYDGLCTFEFGVAVELFGLPRPEMGPNWYAFATAAVEPGP 63 Query: 66 LRGTAGIRFLADGDCELIKQAGTIVIPGWRGLDAPVPQHLSEALQVAHKKGARIMSICSG 125 LRG G++ +ADG EL++ AGTI+ PGWRG D PVPQ L AL+ AH GAR+MSICSG Sbjct: 64 LRGLGGVQVVADGGLELVETAGTIIAPGWRGADKPVPQPLIAALRAAHANGARVMSICSG 123 Query: 126 VAVMAAAGLLHGRKVTLHWKQALHLAQHYPDVIVQPDVLYVDDGDILSSTGGAGGIDLCL 185 V V+AA GLL GR+ T HW+ L YPD+ VQPDVLYVD+GD+++S G A G+DL L Sbjct: 124 VFVLAATGLLAGRRATTHWRYVDKLRALYPDIDVQPDVLYVDEGDVMTSAGSAAGLDLGL 183 Query: 186 HLIRRDFGTKAANVVARRMIVTPHRDGGQAQFIEHAVPELHEAGKLGSLLDEMRAHLAKT 245 HL+RRDFG +AAN VARR+++ PHRDGGQAQFI+ VP HEAG+L +LD MRA LA+ Sbjct: 184 HLVRRDFGPEAANTVARRLVIPPHRDGGQAQFIQRPVPPPHEAGRLSPILDHMRADLARE 243 Query: 246 YSIEEMARFVNMSRRTFLRRFTSAMGTTPVRWLVLERLAKAVDYLENTVISIEEIARLIG 305 ++++ +A MS RTFLRRF +A G TP RWL+ +RLA+A D LE T +E+IA+ +G Sbjct: 244 HTVKALAEAAGMSPRTFLRRFEAATGLTPARWLLAQRLARARDLLETTSAGVEQIAQTVG 303 Query: 306 FSSTSTFRQQFQKRYSLSPMAYRKMFS 332 F + + R F+K + +P AYR F+ Sbjct: 304 FGA-AALRHHFRKSLATTPQAYRARFA 329 >D5C8X5.1 D5C8X5_ENTCC Transcriptional activator FtrA Length = 337 Score = 382 bits (980), Expect = e-104, Method: Compositional matrix adjust. Identities = 178/332 (53%), Positives = 244/332 (73%), Gaps = 3/332 (0%) Query: 1 MPKFAKFVPEQLSLPKLANPLVVVVAYNGLCTFEFAIAVEVFGLDRPEMGANWYRFAVAA 60 MP+ +K + +L +++ PLVVV+AY+GLCTFEF +AVE+FGL RPE+G WYRFAVA Sbjct: 5 MPENSK---KMTNLRQVSRPLVVVLAYDGLCTFEFGVAVEIFGLPRPELGDEWYRFAVAG 61 Query: 61 VDEGPLRGTAGIRFLADGDCELIKQAGTIVIPGWRGLDAPVPQHLSEALQVAHKKGARIM 120 +D+G LR T GIR L DG +L++ A IV+PGWRG+DAPVP LSEAL+ A+ +G +++ Sbjct: 62 IDDGELRATGGIRILTDGGLDLLESADLIVVPGWRGMDAPVPAALSEALRRANARGCQLL 121 Query: 121 SICSGVAVMAAAGLLHGRKVTLHWKQALHLAQHYPDVIVQPDVLYVDDGDILSSTGGAGG 180 SICSGV V+AA+GLL+GRK T HW+ L YP + V DVLY D+GDIL+S G A G Sbjct: 122 SICSGVFVLAASGLLNGRKATTHWRYIEALKARYPAIGVVEDVLYQDEGDILTSAGSAAG 181 Query: 181 IDLCLHLIRRDFGTKAANVVARRMIVTPHRDGGQAQFIEHAVPELHEAGKLGSLLDEMRA 240 IDLCLH++RRD+G + AN VARR+++ PHRDG Q Q + V +L E+ +LG L + + Sbjct: 182 IDLCLHVVRRDYGMETANSVARRLVIPPHRDGSQPQQLSRPVAQLRESQRLGQLFEFLHN 241 Query: 241 HLAKTYSIEEMARFVNMSRRTFLRRFTSAMGTTPVRWLVLERLAKAVDYLENTVISIEEI 300 HL+ ++S++ +AR V MS+RTFLRRF +A GTTP RWL+ ERL +A DYLE++ +SI+ I Sbjct: 242 HLSVSHSVDSLARRVGMSQRTFLRRFQAATGTTPARWLLNERLLRAKDYLESSRLSIDSI 301 Query: 301 ARLIGFSSTSTFRQQFQKRYSLSPMAYRKMFS 332 A GF +T R F+++++LSP YRK F+ Sbjct: 302 AEQTGFGQAATLRHHFRQQFALSPAQYRKQFA 333 >A4WAD1.1 A4WAD1_ENT38 Transcriptional regulator, AraC family with amidase-like domain Length = 333 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 178/331 (53%), Positives = 232/331 (70%), Gaps = 3/331 (0%) Query: 1 MPKFAKFVPEQLSLPKLANPLVVVVAYNGLCTFEFAIAVEVFGLDRPEMGANWYRFAVAA 60 MP+ K + L + +P VVV+AY+GLCTFEF +AVE+FGL RPEMG +WYRFAVAA Sbjct: 1 MPENNK---KMTKLRQPPSPRVVVLAYDGLCTFEFGVAVEIFGLPRPEMGDDWYRFAVAA 57 Query: 61 VDEGPLRGTAGIRFLADGDCELIKQAGTIVIPGWRGLDAPVPQHLSEALQVAHKKGARIM 120 VD+G LR T GIR LADGD L+ A +VIPGWRG+D VP L AL+ AH +G +++ Sbjct: 58 VDKGELRATGGIRVLADGDLSLLNTADLVVIPGWRGVDKTVPAELCNALRDAHARGCQLL 117 Query: 121 SICSGVAVMAAAGLLHGRKVTLHWKQALHLAQHYPDVIVQPDVLYVDDGDILSSTGGAGG 180 SICSGV V+AA+GLL+GR T HW+ L +PD+ V DVLY D+GDIL+S G A G Sbjct: 118 SICSGVFVLAASGLLNGRNATTHWRYTETLKTRFPDITVVEDVLYQDEGDILTSAGSAAG 177 Query: 181 IDLCLHLIRRDFGTKAANVVARRMIVTPHRDGGQAQFIEHAVPELHEAGKLGSLLDEMRA 240 IDLCLH++RRD+G +AAN VARR+++ PHRDG Q Q + V +L E+ +LG L D + Sbjct: 178 IDLCLHVVRRDYGMEAANHVARRLVIPPHRDGAQTQLMRRPVAQLRESERLGQLFDFLHQ 237 Query: 241 HLAKTYSIEEMARFVNMSRRTFLRRFTSAMGTTPVRWLVLERLAKAVDYLENTVISIEEI 300 HL ++S+ +A V MS+RTFLRRF A GTTP RW++ ERL +A DYLE + +SI+ I Sbjct: 238 HLTISHSVSSLAARVGMSQRTFLRRFADATGTTPARWMLNERLLRAKDYLETSRLSIDSI 297 Query: 301 ARLIGFSSTSTFRQQFQKRYSLSPMAYRKMF 331 A GF +T R F++ ++LSP YRK F Sbjct: 298 AAQTGFGHAATLRHHFRQNFALSPAQYRKQF 328