BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0025.0173.p (226 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8ISA2.1 D8ISA2_HERSS DNA repair protein recO 400 e-109 A6SXR5.1 A6SXR5_JANMA DNA repair protein recO 379 e-103 A4G6R6.1 A4G6R6_HERAR DNA repair protein recO 372 e-101 F1W2X3.1 F1W2X3_9BURK DNA recombination and repair protein RecO 363 7e-99 C3XAS8.1 C3XAS8_OXAFO DNA repair protein recO 315 4e-84 >D8ISA2.1 D8ISA2_HERSS DNA repair protein recO Length = 286 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 194/226 (85%), Positives = 206/226 (91%) Query: 1 VLHSYPYKETSLIVDVFSRDHGRVALVAKGAKRPHSKLRGVLQTFQPLSVSWSGKSEVRT 60 VLHSYPYKETSLI+DVFSRDHGRVALVAKGAKRPHSKLRG LQTFQPLS+SWSGKSEVRT Sbjct: 61 VLHSYPYKETSLIIDVFSRDHGRVALVAKGAKRPHSKLRGALQTFQPLSLSWSGKSEVRT 120 Query: 61 LTAAEWVGGLLPLEKSALLCGFYLNELLVKLLAREDAHPALFDHYVSTLNQLAHGESTPI 120 LT AEWVGGLLPLEKSALLCGFYLNELLVKLLAREDAHPALFDHYV+TLN+LAHGE+ PI Sbjct: 121 LTDAEWVGGLLPLEKSALLCGFYLNELLVKLLAREDAHPALFDHYVATLNKLAHGENAPI 180 Query: 121 VLRKFERALLKETGVAGDWTVCVTNGKPVAPDDTYVVDPEQGVRFPRLSDAGPKVSGKTL 180 VLR+FER LLK+TGVAG+W+ CV +GK V PD YVVDPEQG R RLSD PKVSGKTL Sbjct: 181 VLRQFERILLKQTGVAGNWSHCVVSGKTVRPDLIYVVDPEQGTRPERLSDRAPKVSGKTL 240 Query: 181 LDMEKEDYSDATTQSQSKLLMRSLLSHHLGGAQLNTRQILIDLSQL 226 LDME+EDYSD TTQ QSK LMR LL+HHLGGAQLNTRQILIDL QL Sbjct: 241 LDMEREDYSDPTTQLQSKFLMRYLLAHHLGGAQLNTRQILIDLMQL 286 >A6SXR5.1 A6SXR5_JANMA DNA repair protein recO Length = 287 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 184/226 (81%), Positives = 197/226 (87%) Query: 1 VLHSYPYKETSLIVDVFSRDHGRVALVAKGAKRPHSKLRGVLQTFQPLSVSWSGKSEVRT 60 VLHSYPYKETSLIVDVFSRDHGR+ALVAKGAKRPHSKLRGVLQTFQPLSV WSGK+EVRT Sbjct: 62 VLHSYPYKETSLIVDVFSRDHGRIALVAKGAKRPHSKLRGVLQTFQPLSVGWSGKAEVRT 121 Query: 61 LTAAEWVGGLLPLEKSALLCGFYLNELLVKLLAREDAHPALFDHYVSTLNQLAHGESTPI 120 LTAAEWVGGLLPLEKSALLCGFYLNELLVKLLAR+D HPALFDHYVS LNQLAH E PI Sbjct: 122 LTAAEWVGGLLPLEKSALLCGFYLNELLVKLLARDDPHPALFDHYVSALNQLAHDEPAPI 181 Query: 121 VLRKFERALLKETGVAGDWTVCVTNGKPVAPDDTYVVDPEQGVRFPRLSDAGPKVSGKTL 180 VLRKFERALLKETGVA DW VC +GK + + YV+DPE+G R R +D P+VSGKTL Sbjct: 182 VLRKFERALLKETGVASDWRVCTASGKAIVLEQIYVLDPERGPRPARPADVWPRVSGKTL 241 Query: 181 LDMEKEDYSDATTQSQSKLLMRSLLSHHLGGAQLNTRQILIDLSQL 226 LDME EDY+D TQ+QSK LMR LL+HHL GA LNTRQILIDL QL Sbjct: 242 LDMENEDYTDTQTQTQSKFLMRFLLAHHLNGAPLNTRQILIDLLQL 287 >A4G6R6.1 A4G6R6_HERAR DNA repair protein recO Length = 284 Score = 372 bits (954), Expect = e-101, Method: Compositional matrix adjust. Identities = 181/226 (80%), Positives = 196/226 (86%) Query: 1 VLHSYPYKETSLIVDVFSRDHGRVALVAKGAKRPHSKLRGVLQTFQPLSVSWSGKSEVRT 60 VLHSYPYKETSLIVDVF+RDHGR+ALVAKGAKRPHSKLRGVLQTFQPLSVSWSGK+EVRT Sbjct: 59 VLHSYPYKETSLIVDVFTRDHGRIALVAKGAKRPHSKLRGVLQTFQPLSVSWSGKAEVRT 118 Query: 61 LTAAEWVGGLLPLEKSALLCGFYLNELLVKLLAREDAHPALFDHYVSTLNQLAHGESTPI 120 LT+AEWVGGLLPLEKSALLCGFYLNELLVKLLAR+D+HPALF+HYVS LNQLAH E I Sbjct: 119 LTSAEWVGGLLPLEKSALLCGFYLNELLVKLLARDDSHPALFNHYVSALNQLAHDEPAAI 178 Query: 121 VLRKFERALLKETGVAGDWTVCVTNGKPVAPDDTYVVDPEQGVRFPRLSDAGPKVSGKTL 180 VLRKFERALLKE+GV+GDW +C P+ YVVDPE+G R R +D P V+GKTL Sbjct: 179 VLRKFERALLKESGVSGDWKICTATRNPLLGGINYVVDPERGPRPARPADTWPHVAGKTL 238 Query: 181 LDMEKEDYSDATTQSQSKLLMRSLLSHHLGGAQLNTRQILIDLSQL 226 LDMEKEDYSDA TQ QSK LMR LL+HHL GA LNTRQILIDL QL Sbjct: 239 LDMEKEDYSDAATQMQSKFLMRFLLAHHLNGAPLNTRQILIDLLQL 284 >F1W2X3.1 F1W2X3_9BURK DNA recombination and repair protein RecO Length = 264 Score = 363 bits (933), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 173/226 (76%), Positives = 198/226 (87%) Query: 1 VLHSYPYKETSLIVDVFSRDHGRVALVAKGAKRPHSKLRGVLQTFQPLSVSWSGKSEVRT 60 VLHSYP+KETSLI+DVF+R+HGR+ALVAKGAKRPHS LRGVLQTFQPLS+SW+GKSE+RT Sbjct: 39 VLHSYPHKETSLIIDVFTREHGRIALVAKGAKRPHSALRGVLQTFQPLSLSWTGKSEIRT 98 Query: 61 LTAAEWVGGLLPLEKSALLCGFYLNELLVKLLAREDAHPALFDHYVSTLNQLAHGESTPI 120 LTAAEWVGGLLPLEKSALLCGFYLNELLVKL+AR+D HP LFDHYVS LNQLAHGE+ I Sbjct: 99 LTAAEWVGGLLPLEKSALLCGFYLNELLVKLIARDDPHPGLFDHYVSALNQLAHGEAATI 158 Query: 121 VLRKFERALLKETGVAGDWTVCVTNGKPVAPDDTYVVDPEQGVRFPRLSDAGPKVSGKTL 180 VLRKFE +L+K+TGVA D ++C +PV P +YVVDPE+GVR R SD P+VSG+TL Sbjct: 159 VLRKFELSLMKQTGVAADLSLCSGTREPVVPTSSYVVDPERGVRLARPSDIWPRVSGQTL 218 Query: 181 LDMEKEDYSDATTQSQSKLLMRSLLSHHLGGAQLNTRQILIDLSQL 226 LDME+EDY+ TTQSQSK LMR LL+H LGG LNTRQILIDL+QL Sbjct: 219 LDMEREDYAGTTTQSQSKFLMRFLLAHQLGGVPLNTRQILIDLTQL 264 >C3XAS8.1 C3XAS8_OXAFO DNA repair protein recO Length = 265 Score = 315 bits (806), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 155/226 (68%), Positives = 180/226 (79%) Query: 1 VLHSYPYKETSLIVDVFSRDHGRVALVAKGAKRPHSKLRGVLQTFQPLSVSWSGKSEVRT 60 VLHSY YKE+SL+VDVF+RD+GRVALVAKGAKRP S+LRGVLQTFQPLS+ W+GKSE+RT Sbjct: 40 VLHSYVYKESSLVVDVFTRDYGRVALVAKGAKRPTSRLRGVLQTFQPLSIGWTGKSELRT 99 Query: 61 LTAAEWVGGLLPLEKSALLCGFYLNELLVKLLAREDAHPALFDHYVSTLNQLAHGESTPI 120 LT AEW+GG++PLE SALL GFYLNELL+KL ARED H LFDHYV LN+LA ES Sbjct: 100 LTTAEWIGGMIPLENSALLYGFYLNELLLKLTAREDPHHLLFDHYVKALNRLATSESAQT 159 Query: 121 VLRKFERALLKETGVAGDWTVCVTNGKPVAPDDTYVVDPEQGVRFPRLSDAGPKVSGKTL 180 VLR FE ALLKETGVA D ++ T + V P++ YVVDPE G R R+ D P+++GKTL Sbjct: 160 VLRIFELALLKETGVAADLSIDTTTRQKVDPEEVYVVDPENGPRPARMGDEAPRMAGKTL 219 Query: 181 LDMEKEDYSDATTQSQSKLLMRSLLSHHLGGAQLNTRQILIDLSQL 226 LDM EDYSD TQ QSKLLMR LL+HHL G L TR+IL+DL QL Sbjct: 220 LDMVCEDYSDQQTQLQSKLLMRYLLAHHLNGVPLQTRKILLDLRQL 265